4.0:Information of module
sim smr1
In comparison with root callus inducing medium 48 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0061640 cytoskeleton-dependent cytokinesis BP 5.252e-16
GO:0000911 cytokinesis by cell plate formation BP 6.975e-16
GO:0032506 cytokinetic process BP 8.871e-16
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009753 response to jasmonic acid BP 2.601e-14
GO:0010200 response to chitin BP 6.867e-14
GO:0010243 response to organonitrogen compound BP 2.759e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sim smr1		 Log2 signal ratio
root callus inducing medium 48 h
1 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 0.362 0.028
2 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.351 0.911
3 253156_at AT4G35730 [Regulator of Vps4 activity in the MVB pathway protein] 0.344 0.376
4 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 0.341 0.151
5 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.338 -0.413
6 251750_at AT3G55710 [UDP-Glycosyltransferase superfamily protein] 0.330 0.047
7 267636_at AT2G42110 unknown 0.310 0.226
8 257271_at AT3G28007 AtSWEET4, SWEET4 0.297 -0.120
9 264763_at AT1G61450 unknown 0.275 0.315
10 264832_at AT1G03660 [Ankyrin-repeat containing protein] 0.258 -0.287
11 249809_at AT5G23910 [ATP binding microtubule motor family protein] 0.256 0.462
12 261780_at AT1G76310 CYCB2;4, CYCLIN B2;4 0.253 0.503
13 245814_at AT1G49910 BUB3.2, BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.2 0.252 0.470
14 247039_at AT5G67270 ATEB1C, MICROTUBULE END BINDING PROTEIN 1, ATEB1H1, ATEB1-HOMOLOG1, EB1C, end binding protein 1C 0.252 0.330
15 250764_at AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.250 -0.144
16 263031_at AT1G24070 ATCSLA10, cellulose synthase-like A10, CSLA10, CELLULOSE SYNTHASE LIKE A10, CSLA10, cellulose synthase-like A10 0.250 -0.032
17 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.248 0.016
18 248057_at AT5G55520 unknown 0.247 0.579
19 250844_at AT5G04470 SIM, SIAMESE 0.241 -0.169
20 267232_at AT2G44190 EDE1, ENDOSPERM DEFECTIVE 1, EMB3116, EMBRYO DEFECTIVE 3116, QWRF5, QWRF domain containing 5 0.233 0.556
21 267388_at AT2G44450 BGLU15, beta glucosidase 15 0.231 0.048
22 255460_at AT4G02800 unknown 0.231 0.659
23 259232_at AT3G11420 unknown 0.227 -0.230
24 256832_at AT3G22880 ARLIM15, ARABIDOPSIS HOMOLOG OF LILY MESSAGES INDUCED AT MEIOSIS 15, ATDMC1, ARABIDOPSIS THALIANA DISRUPTION OF MEIOTIC CONTROL 1, DMC1, DISRUPTION OF MEIOTIC CONTROL 1 0.224 -0.064
25 258859_at AT3G02120 [hydroxyproline-rich glycoprotein family protein] 0.219 0.336
26 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.207 -0.316
27 259912_at AT1G72670 iqd8, IQ-domain 8 0.203 0.425
28 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.202 -0.506
29 252781_at AT3G42950 [Pectin lyase-like superfamily protein] 0.202 0.004
30 247134_at AT5G66230 [Chalcone-flavanone isomerase family protein] 0.198 0.341
31 261085_at AT1G17480 IQD7, IQ-domain 7 0.197 0.377
32 266655_at AT2G25880 AtAUR2, ataurora2, AUR2, ataurora2 0.197 0.340
33 252054_at AT3G52540 ATOFP18, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 18, OFP18, ovate family protein 18 0.196 0.007
34 248456_at AT5G51380 [RNI-like superfamily protein] 0.195 0.494
35 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE 0.194 0.179
36 250267_at AT5G12930 unknown 0.194 -0.091
37 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.194 -0.328
38 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 0.192 -0.139
39 250386_at AT5G11510 AtMYB3R4, myb domain protein 3R4, MYB3R-4, myb domain protein 3r-4 0.192 0.356
40 249965_at AT5G19020 MEF18, mitochondrial editing factor 18 0.191 0.345
41 252745_at AT3G43230 [RING/FYVE/PHD-type zinc finger family protein] 0.190 -0.002
42 266163_at AT2G28130 unknown 0.180 0.221
43 260349_at AT1G69400 [Transducin/WD40 repeat-like superfamily protein] 0.179 0.179
44 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] 0.179 -0.424
45 251903_at AT3G54120 [Reticulon family protein] 0.175 0.139
46 267529_at AT2G45490 AtAUR3, ataurora3, AUR3, ataurora3 0.173 0.255
47 248839_at AT5G46690 bHLH071, beta HLH protein 71 0.170 -0.066
48 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.166 -0.189
49 255597_at AT4G01730 [DHHC-type zinc finger family protein] 0.166 0.367
50 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 0.165 -0.001
51 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 0.165 -0.032
52 255236_at AT4G05520 ATEHD2, EPS15 homology domain 2, EHD2, EPS15 homology domain 2 0.165 0.318
53 256940_at AT3G30720 QQS, QUA-QUINE STARCH -0.766 -0.199
54 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 -0.708 -0.019
55 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B -0.659 -1.335
56 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 -0.555 0.178
57 262211_at AT1G74930 ORA47 -0.551 -1.010
58 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.540 -0.008
59 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.539 -0.597
60 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 -0.519 -0.597
61 258919_at AT3G10525 LGO, LOSS OF GIANT CELLS FROM ORGANS, SMR1, SIAMESE RELATED 1 -0.503 -0.100
62 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 -0.434 -0.728
63 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 -0.434 -0.513
64 261817_at AT1G08180 unknown -0.390 -0.149
65 247543_at AT5G61600 ERF104, ethylene response factor 104 -0.377 -0.263
66 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.374 0.066
67 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -0.370 -0.421
68 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A -0.361 -0.330
69 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 -0.349 -0.581
70 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.345 -0.162
71 245252_at AT4G17500 ATERF-1, ethylene responsive element binding factor 1, ERF-1, ethylene responsive element binding factor 1 -0.334 -0.288
72 253832_at AT4G27654 unknown -0.328 -1.017
73 248910_at AT5G45820 CIPK20, CBL-interacting protein kinase 20, PKS18, PROTEIN KINASE 18, SnRK3.6, SNF1-RELATED PROTEIN KINASE 3.6 -0.325 -0.020
74 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -0.305 -0.726
75 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 -0.295 -0.609
76 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.290 -0.190
77 253915_at AT4G27280 [Calcium-binding EF-hand family protein] -0.290 -0.278
78 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.286 0.199
79 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.282 -0.535
80 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 -0.282 -0.355
81 259979_at AT1G76600 unknown -0.280 -0.584
82 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN -0.270 -0.105
83 266278_at AT2G29300 [NAD(P)-binding Rossmann-fold superfamily protein] -0.263 0.013
84 256999_at AT3G14200 [Chaperone DnaJ-domain superfamily protein] -0.263 -0.437
85 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.255 0.114
86 255284_at AT4G04610 APR, APR1, APS reductase 1, ATAPR1, PRH19, PAPS REDUCTASE HOMOLOG 19 -0.252 -0.128
87 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A -0.244 -1.019
88 252193_at AT3G50060 MYB77, myb domain protein 77 -0.243 -0.361
89 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 -0.241 -0.799
90 254692_at AT4G17860 unknown -0.233 -0.032
91 257673_at AT3G20370 [TRAF-like family protein] -0.232 -0.031
92 260881_at AT1G21550 [Calcium-binding EF-hand family protein] -0.232 -0.658
93 256096_at AT1G13650 unknown -0.229 -0.114
94 252429_at AT3G47500 CDF3, cycling DOF factor 3 -0.229 -0.117
95 247452_at AT5G62430 CDF1, cycling DOF factor 1 -0.228 -0.881
96 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.227 -0.029
97 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 -0.227 0.788
98 249645_at AT5G36910 THI2.2, thionin 2.2 -0.223 0.015
99 248432_at AT5G51390 unknown -0.222 -0.502
100 251497_at AT3G59060 PIF5, PHYTOCHROME-INTERACTING FACTOR 5, PIL6, phytochrome interacting factor 3-like 6 -0.218 -0.140
101 252629_at AT3G44970 [Cytochrome P450 superfamily protein] -0.216 0.044
102 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 -0.215 -0.071
103 256526_at AT1G66090 [Disease resistance protein (TIR-NBS class)] -0.215 -0.945