4.0:Information of module
agp6 agp11 pollen tube
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000278 mitotic cell cycle BP 1.631e-04
GO:1903047 mitotic cell cycle process BP 4.395e-04
GO:0000910 cytokinesis BP 1.064e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009860 pollen tube growth BP 4.238e-05
GO:0009932 cell tip growth BP 1.077e-04
GO:0009826 unidimensional cell growth BP 1.971e-04
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
agp6 agp11 pollen tube		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 1.259 -0.305
2 250951_at AT5G03550 unknown 1.146 -1.170
3 259817_at AT1G49880 AtErv1, EMB3106, EMBRYO DEFECTIVE 3106, Erv1, Erv1 1.007 0.435
4 254836_at AT4G12330 CYP706A7, cytochrome P450, family 706, subfamily A, polypeptide 7 0.999 0.034
5 253264_at AT4G33950 ATOST1, OPEN STOMATA 1, OST1, OPEN STOMATA 1, P44, SNRK2-6, SUCROSE NONFERMENTING 1-RELATED PROTEIN KINASE 2-6, SNRK2.6, SNF1-RELATED PROTEIN KINASE 2.6, SRK2E 0.973 1.198
6 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.969 -0.705
7 251212_at AT3G62480 unknown 0.962 -0.626
8 246967_at AT5G24860 ATFPF1, ARABIDOPSIS FLOWERING PROMOTING FACTOR 1, FPF1, FLOWERING PROMOTING FACTOR 1 0.857 -0.896
9 254961_at AT4G11030 [AMP-dependent synthetase and ligase family protein] 0.830 -0.113
10 250135_at AT5G15360 unknown 0.822 -0.502
11 248686_at AT5G48540 [receptor-like protein kinase-related family protein] 0.818 1.077
12 257453_at AT1G65130 [Ubiquitin carboxyl-terminal hydrolase-related protein] 0.807 0.034
13 263700_at AT1G31150 [FUNCTIONS IN: sequence-specific DNA binding transcription factor activity] 0.750 -0.601
14 261428_at AT1G18870 ATICS2, ARABIDOPSIS ISOCHORISMATE SYNTHASE 2, ICS2, isochorismate synthase 2 0.745 -0.902
15 254898_at AT4G11480 CRK32, cysteine-rich RLK (RECEPTOR-like protein kinase) 32 0.721 -1.018
16 248390_at AT5G52000 IMPA-8, importin alpha isoform 8 0.686 -0.607
17 246535_at AT5G15900 TBL19, TRICHOME BIREFRINGENCE-LIKE 19 0.680 0.306
18 247124_at AT5G66060 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.677 -0.394
19 267594_at AT2G33000 [ubiquitin-associated (UBA)/TS-N domain-containing protein-related] 0.676 -0.030
20 245951_at AT5G19550 AAT2, ASPARTATE AMINOTRANSFERASE 2, ASP2, aspartate aminotransferase 2 0.663 0.340
21 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 0.660 0.677
22 258686_at AT3G07840 [Pectin lyase-like superfamily protein] 0.632 -1.010
23 245454_at AT4G16920 [Disease resistance protein (TIR-NBS-LRR class) family] 0.631 -1.047
24 258606_at AT3G02840 [ARM repeat superfamily protein] 0.631 -0.781
25 247572_at AT5G61220 [LYR family of Fe/S cluster biogenesis protein] 0.622 1.046
26 261106_at AT1G62990 IXR11, KNAT7, KNOTTED-like homeobox of Arabidopsis thaliana 7 0.620 -0.826
27 255260_at AT4G05040 [ankyrin repeat family protein] 0.602 0.007
28 249368_at AT5G40640 unknown 0.600 -0.791
29 266733_at AT2G03280 [O-fucosyltransferase family protein] 0.596 -0.483
30 256333_at AT1G76860 LSM3B, SM-like 3B 0.562 -0.046
31 262610_at AT1G14140 UCP3, Uncoupling Protein 3 0.561 0.317
32 261022_at AT1G12260 ANAC007, NAC 007, EMB2749, EMBRYO DEFECTIVE 2749, NAC007, NAC 007, VND4, VASCULAR RELATED NAC-DOMAIN PROTEIN 4 0.531 -0.966
33 251563_at AT3G57880 [Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein] 0.528 -0.240
34 250059_at AT5G17820 [Peroxidase superfamily protein] 0.525 0.107
35 245497_at AT4G16460 unknown 0.521 -1.372
36 261544_at AT1G63540 [hydroxyproline-rich glycoprotein family protein] 0.521 -0.775
37 249177_at AT5G42850 [Thioredoxin superfamily protein] 0.514 0.003
38 247932_at AT5G56920 [Cystatin/monellin superfamily protein] 0.513 -1.032
39 259115_at AT3G01360 unknown 0.501 0.503
40 259297_at AT3G05360 AtRLP30, receptor like protein 30, RLP30, receptor like protein 30 0.481 -0.700
41 259815_at AT1G49870 unknown 0.480 -0.586
42 261311_at AT1G05770 [Mannose-binding lectin superfamily protein] 0.477 -0.372
43 260552_at AT2G43430 GLX2-1, glyoxalase 2-1, GLY1, GLYOXALASE II 0.473 -0.647
44 259242_at AT3G33520 ARP6, actin-related protein 6, ATARP6, actin-related protein 6, ESD1, EARLY IN SHORT DAYS 1, SUF3, SUPPRESSOR OF FRI 3 0.468 0.068
45 254728_at AT4G13690 unknown 0.466 -0.568
46 264888_at AT1G23070 unknown 0.461 -0.652
47 259750_at AT1G71130 AtERF070, CRF8, cytokinin response factor 8, ERF070, ethylene response factor 70 0.454 0.490
48 262928_at AT1G65760 unknown 0.452 -0.829
49 259682_at AT1G63040 [pseudogene] 0.452 -0.583
50 251532_at AT3G58530 [RNI-like superfamily protein] 0.449 0.023
51 255569_at AT4G01320 ATSTE24, STE24 0.444 1.025
52 259251_at AT3G07600 [Heavy metal transport/detoxification superfamily protein ] 0.442 -0.922
53 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 0.435 0.170
54 257256_at AT3G21970 unknown 0.432 -0.319
55 245380_at AT4G17760 [damaged DNA binding] 0.431 -1.150
56 261378_at AT1G18890 ATCDPK1, calcium-dependent protein kinase 1, AtCPK10, CDPK1, calcium-dependent protein kinase 1, CPK10 0.423 -0.134
57 260844_at AT1G29260 ATPEX7, ARABIDOPSIS PEROXIN 7, PEX7, peroxin 7 0.422 -0.164
58 263717_at AT2G13560 NAD-ME1, NAD-dependent malic enzyme 1 0.421 0.836
59 247301_at AT5G63920 AtTOP3alpha, TOP3A, topoisomerase 3alpha 0.420 -0.194
60 262142_at AT1G52640 [Pentatricopeptide repeat (PPR) superfamily protein] 0.419 -0.468
61 261906_at AT1G65080 [Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain] 0.417 -0.882
62 248955_at AT5G45600 GAS41, GLIOMAS 41, TAF14B, TBP-ASSOCIATED FACTOR 14B, YAF9a, homolog of yeast YAF9 a 0.411 0.382
63 264336_at AT1G70360 [F-box family protein] 0.410 0.346
64 266569_at AT2G24080 unknown 0.410 0.378
65 249786_at AT5G24310 ABIL3, ABL interactor-like protein 3 0.410 0.556
66 251964_at AT3G53370 [S1FA-like DNA-binding protein] 0.405 0.353
67 260513_at AT1G51490 BGLU36, beta glucosidase 36 0.404 -0.092
68 255865_at AT2G30330 BLOS1, BLOC subunit 1 0.404 -0.135
69 247714_at AT5G59340 WOX2, WUSCHEL related homeobox 2 0.395 -1.340
70 252274_at AT3G49680 ATBCAT-3, BCAT3, branched-chain aminotransferase 3 0.394 0.662
71 251162_at AT3G63300 FKD1, FORKED 1 0.390 -0.186
72 251369_at AT3G60480 unknown 0.385 0.267
73 248588_at AT5G49540 [Rab5-interacting family protein] 0.376 0.904
74 264538_at AT1G55600 ATWRKY10, MINI3, MINISEED 3, WRKY10, WRKY DNA-binding protein 10 0.376 -0.628
75 264610_at AT1G04645 [Plant self-incompatibility protein S1 family] 0.374 -1.015
76 246567_at AT5G14950 ATGMII, GMII, golgi alpha-mannosidase II 0.361 -0.384
77 251285_at AT3G61770 [Acid phosphatase/vanadium-dependent haloperoxidase-related protein] 0.359 0.587
78 266310_at AT2G26990 ATCSN2, COP12, CONSTITUTIVE PHOTOMORPHOGENIC 12, CSN2, FUS12, FUSCA 12 0.356 0.452
79 246998_at AT5G67370 CGLD27, CONSERVED IN THE GREEN LINEAGE AND DIATOMS 27 0.356 0.466
80 266182_at AT2G02370 [SNARE associated Golgi protein family] 0.351 0.928
81 267133_at AT2G23440 unknown 0.350 -1.057
82 263149_at AT1G53970 unknown 0.349 -0.604
83 256175_at AT1G51670 unknown 0.344 -0.719
84 253646_at AT4G29810 ATMKK2, MAP kinase kinase 2, MK1, MAP KINASE KINASE 1, MKK2, MAP kinase kinase 2 0.344 0.187
85 259189_at AT3G01700 AGP11, arabinogalactan protein 11, ATAGP11, ARABINOGALACTAN PROTEIN 11 -1.559 -0.494
86 249598_at AT5G37970 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -1.303 -0.499
87 264051_at AT2G22340 unknown -1.299 -1.430
88 245579_at AT4G14810 unknown -1.196 -0.027
89 250174_at AT5G14380 AGP6, arabinogalactan protein 6 -1.191 -0.880
90 263566_at AT2G15340 [glycine-rich protein] -1.086 -0.400
91 247539_at AT5G61710 unknown -1.081 -0.646
92 259522_at AT1G12490 [F-box associated ubiquitination effector family protein] -1.072 -0.886
93 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] -1.050 -1.086
94 255003_at AT4G09950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -1.040 0.079
95 252614_at AT3G45220 [Serine protease inhibitor (SERPIN) family protein] -1.033 -1.404
96 254753_at AT4G13190 [Protein kinase superfamily protein] -0.993 -0.718
97 262206_at AT2G01090 [Ubiquinol-cytochrome C reductase hinge protein] -0.973 1.437
98 266879_at AT2G44590 ADL1D, DYNAMIN-like 1D, DL1D, DYNAMIN-like 1D -0.968 -0.549
99 256741_at AT3G29375 [XH domain-containing protein] -0.941 1.062
100 245448_at AT4G16860 RPP4, recognition of peronospora parasitica 4 -0.924 -0.491
101 252651_at AT3G44700 unknown -0.915 -0.942
102 252684_at AT3G44400 [Disease resistance protein (TIR-NBS-LRR class) family] -0.905 -1.437
103 254908_at AT4G11200 unknown -0.903 -0.333
104 251346_at AT3G60980 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.894 0.473
105 256407_at AT1G66570 ATSUC7, sucrose-proton symporter 7, SUC7, sucrose-proton symporter 7 -0.894 -0.359
106 262404_at AT1G34660 [CACTA-like transposase family (En/Spm), has a 1.1e-114 P-value blast match to GB:BAA20532 ORF of transposon Tdc1 (CACTA-element) (Daucus carota)] -0.873 -0.861
107 266645_at AT2G29880 unknown -0.860 -1.538
108 255159_at AT4G07810 [copia-like retrotransposon family, has a 7.1e-230 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] -0.840 -0.320
109 263828_at AT2G40250 [SGNH hydrolase-type esterase superfamily protein] -0.837 -0.027
110 247682_at AT5G59650 [Leucine-rich repeat protein kinase family protein] -0.835 -0.970
111 256408_at AT1G66610 [TRAF-like superfamily protein] -0.819 -0.198
112 249185_at AT5G43030 [Cysteine/Histidine-rich C1 domain family protein] -0.781 0.230
113 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 -0.777 0.749
114 252663_at AT3G44070 [Glycosyl hydrolase family 35 protein] -0.776 0.437
115 249140_at AT5G43190 [Galactose oxidase/kelch repeat superfamily protein] -0.769 0.150
116 255237_at AT4G05550 [Mutator-like transposase family, has a 4.9e-80 P-value blast match to Q9S9W4 /247-408 Pfam PF03108 MuDR family transposase (MuDr-element domain)] -0.750 -0.841
117 249874_at AT5G23070 AtTK1b, TK1b, thymidine kinase 1b -0.749 1.463
118 264288_at AT1G62045 unknown -0.744 0.837
119 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 -0.737 0.564
120 265098_at AT1G04010 ATPSAT1, ERP1, enhanced response to Phytophthora 1, PSAT1, phospholipid sterol acyl transferase 1 -0.734 0.468
121 267110_at AT2G14800 unknown -0.733 -1.055
122 262421_at AT1G50290 unknown -0.732 0.230
123 251046_at AT5G02370 [ATP binding microtubule motor family protein] -0.730 0.381
124 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 -0.723 -0.476
125 254555_at AT4G19570 [Chaperone DnaJ-domain superfamily protein] -0.703 -0.572
126 250143_at AT5G14670 ARFA1B, ADP-ribosylation factor A1B, ATARFA1B, ADP-ribosylation factor A1B -0.703 -0.470
127 257201_at AT3G23740 unknown -0.699 -0.040
128 264896_at AT1G23210 AtGH9B6, glycosyl hydrolase 9B6, GH9B6, glycosyl hydrolase 9B6 -0.697 -1.118
129 254762_at AT4G13230 [Late embryogenesis abundant protein (LEA) family protein] -0.687 -0.116
130 250830_at AT5G04910 unknown -0.656 0.090
131 254481_at AT4G20480 [Putative endonuclease or glycosyl hydrolase] -0.656 1.061
132 257197_at AT3G23800 SBP3, selenium-binding protein 3 -0.655 0.511
133 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] -0.654 0.583
134 264611_at AT1G04680 [Pectin lyase-like superfamily protein] -0.649 0.047
135 248936_at AT5G45710 AT-HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, HSFA4C, HEAT SHOCK TRANSCRIPTION FACTOR A4C, RHA1, ROOT HANDEDNESS 1 -0.647 0.602
136 259476_at AT1G19000 [Homeodomain-like superfamily protein] -0.639 -0.238
137 254015_at AT4G26140 BGAL12, beta-galactosidase 12 -0.616 -1.099
138 256946_at AT3G19040 HAF2, histone acetyltransferase of the TAFII250 family 2, TAF1, TBP-ASSOCIATED FACTOR 1, TAF1B, TBP-ASSOCIATED FACTOR 1B -0.615 -0.639
139 246595_at AT5G14780 FDH, formate dehydrogenase -0.610 -0.342
140 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 -0.610 0.590
141 246969_at AT5G24880 unknown -0.597 -1.014
142 259880_at AT1G76730 COG0212, Clusters of Orthologous group 212 -0.594 -0.045
143 247683_at AT5G59660 [Leucine-rich repeat protein kinase family protein] -0.593 -0.377
144 267220_at AT2G02500 ATMEPCT, ISPD, MCT, 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLTRANSFERASE -0.576 0.097
145 264636_at AT1G65490 unknown -0.571 -0.749
146 250037_at AT5G18350 [Disease resistance protein (TIR-NBS-LRR class) family] -0.566 -0.515
147 248269_at AT5G53470 ACBP, ACYL-COA BINDING PROTEIN, ACBP1, acyl-CoA binding protein 1, AtACBP1 -0.566 -0.115
148 252552_at AT3G45900 [Ribonuclease P protein subunit P38-related] -0.566 0.964
149 248413_at AT5G51600 ATMAP65-3, ARABIDOPSIS THALIANA MICROTUBULE-ASSOCIATED PROTEIN 65-3, MAP65-3, MICROTUBULE-ASSOCIATED PROTEIN 65-3, PLE, PLEIADE -0.560 -0.680
150 260890_at AT1G29090 [Cysteine proteinases superfamily protein] -0.558 0.187
151 248435_at AT5G51210 OLEO3, oleosin3 -0.558 0.098
152 246486_at AT5G15910 [NAD(P)-binding Rossmann-fold superfamily protein] -0.557 0.592
153 261890_at AT1G80970 [XH domain-containing protein] -0.557 -0.393
154 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.555 -0.691
155 257424_at AT1G78840 [F-box/RNI-like/FBD-like domains-containing protein] -0.552 -0.520
156 246497_at AT5G16220 [Octicosapeptide/Phox/Bem1p family protein] -0.550 0.194
157 251763_at AT3G55730 AtMYB109, myb domain protein 109, MYB109, myb domain protein 109 -0.545 0.263
158 259110_at AT3G05570 unknown -0.545 0.230
159 254572_at AT4G19380 [Long-chain fatty alcohol dehydrogenase family protein] -0.544 -0.835
160 254956_at AT4G10850 AtSWEET7, SWEET7 -0.539 -0.632
161 262918_at AT1G65000 unknown -0.536 0.212
162 250007_at AT5G18670 BAM9, BETA-AMYLASE 9, BMY3, beta-amylase 3 -0.527 -0.005
163 253017_at AT4G37970 ATCAD6, CAD6, cinnamyl alcohol dehydrogenase 6 -0.523 0.276
164 248336_at AT5G52420 unknown -0.521 0.962
165 266713_at AT2G46760 AtGulLO6, GulLO6, L -gulono-1,4-lactone ( L -GulL) oxidase 6 -0.515 -0.834
166 250958_at AT5G03260 LAC11, laccase 11 -0.508 -0.745
167 260990_at AT1G12180 unknown -0.501 -0.258