4.0:Information of module
S5
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006595 polyamine metabolic process BP 1.760e-03
GO:0006576 cellular biogenic amine metabolic proces... BP 1.646e-02
GO:0044106 cellular amine metabolic process BP 1.879e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009740 gibberellic acid mediated signaling path... BP 5.903e-04
GO:0010476 gibberellin mediated signaling pathway BP 6.349e-04
GO:0071370 cellular response to gibberellin stimulu... BP 7.312e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
S5		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 258452_at AT3G22370 AOX1A, alternative oxidase 1A, ATAOX1A, AtHSR3, HSR3, hyper-sensitivity-related 3 0.578 -0.432
2 253832_at AT4G27654 unknown 0.230 -1.506
3 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.176 0.660
4 260135_at AT1G66400 CML23, calmodulin like 23 0.173 -0.559
5 255777_at AT1G18630 GR-RBP6, glycine-rich RNA-binding protein 6 0.171 0.218
6 247432_at AT5G62500 ATEB1, ATEB1B, END BINDING PROTEIN 1B, EB1B, end binding protein 1B 0.171 0.176
7 263106_at AT2G05160 [CCCH-type zinc fingerfamily protein with RNA-binding domain] 0.168 -0.337
8 262702_at AT1G16220 [Protein phosphatase 2C family protein] 0.168 0.267
9 262255_at AT1G53790 [F-box and associated interaction domains-containing protein] 0.158 -0.597
10 247676_at AT5G59980 AtRPP30, GAF1, GAMETOPHYTE DEFECTIVE 1, RPP30 0.157 -0.495
11 246615_at AT5G35420 unknown 0.156 -0.928
12 249290_at AT5G41060 [DHHC-type zinc finger family protein] 0.152 0.506
13 253726_at AT4G29430 rps15ae, ribosomal protein S15A E 0.151 -0.230
14 263039_at AT1G23280 [MAK16 protein-related] 0.144 0.266
15 248890_at AT5G46270 [Disease resistance protein (TIR-NBS-LRR class) family] 0.142 -0.472
16 266751_at AT2G47020 [Peptide chain release factor 1] 0.132 -0.335
17 267309_at AT2G19385 [zinc ion binding] 0.129 0.439
18 259217_at AT3G03620 [MATE efflux family protein] 0.128 0.007
19 255029_x_at AT4G09470 0.124 -0.482
20 261884_at AT1G80910 unknown 0.118 0.818
21 257522_at AT3G08990 [Yippee family putative zinc-binding protein] 0.117 0.162
22 255876_at AT2G40480 unknown 0.115 -0.037
23 264027_at AT2G03670 CDC48B, cell division cycle 48B 0.114 0.885
24 246973_at AT5G24970 [Protein kinase superfamily protein] 0.113 0.016
25 250211_at AT5G13880 unknown 0.108 -1.000
26 256908_at AT3G24040 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.102 0.322
27 256659_at AT3G12020 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.100 0.174
28 261942_at AT1G22590 AGL87, AGAMOUS-like 87 -0.311 -0.090
29 255531_at AT4G02160 unknown -0.249 -0.921
30 248725_at AT5G47980 [HXXXD-type acyl-transferase family protein] -0.236 -0.906
31 261961_at AT1G36510 [Nucleic acid-binding proteins superfamily] -0.229 -0.261
32 253298_at AT4G33560 [Wound-responsive family protein] -0.223 0.411
33 257994_at AT3G19920 unknown -0.220 0.983
34 247685_at AT5G59680 [Leucine-rich repeat protein kinase family protein] -0.216 -0.322
35 252835_at AT3G42060 [myosin heavy chain-related] -0.195 -0.634
36 254326_at AT4G22610 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.195 -0.945
37 245191_at AT1G67770 TEL2, terminal EAR1-like 2 -0.190 -0.321
38 258224_at AT3G15670 [Late embryogenesis abundant protein (LEA) family protein] -0.189 1.110
39 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 -0.189 0.248
40 265543_at AT2G28270 [Cysteine/Histidine-rich C1 domain family protein] -0.188 -0.225
41 259136_at AT3G05470 [Actin-binding FH2 (formin homology 2) family protein] -0.183 0.724
42 247253_at AT5G64790 [O-Glycosyl hydrolases family 17 protein] -0.183 -0.471
43 257752_at AT3G18720 [F-box family protein] -0.179 -0.620
44 251458_at AT3G60170 [copia-like retrotransposon family, has a 7.6e-229 P-value blast match to gb|AAO73527.1| gag-pol polyprotein (Glycine max) (SIRE1) (Ty1_Copia-family)] -0.172 0.240
45 251231_at AT3G62760 ATGSTF13 -0.169 -0.427
46 253850_at AT4G28090 sks10, SKU5 similar 10 -0.167 -0.694
47 265601_at AT2G14390 unknown -0.166 -1.177
48 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 -0.165 0.475
49 249955_at AT5G18840 [Major facilitator superfamily protein] -0.165 -0.506
50 258878_at AT3G03170 unknown -0.165 -0.061
51 259966_at AT1G76500 AHL29, AT-hook motif nuclear-localized protein 29, SOB3, SUPPRESSOR OF PHYB-4#3 -0.164 0.748
52 267395_at AT2G44250 unknown -0.164 -0.877
53 257097_at AT3G30830 [copia-like retrotransposon family, has a 6.8e-26 P-value blast match to gb|AAG52950.1| putative envelope protein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] -0.162 -0.395