4.0:Information of module
sid2-1 cold
In comparison with RGA-GR-DEX help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0030029 actin filament-based process BP 1.512e-03
GO:0009438 methylglyoxal metabolic process BP 2.407e-03
GO:0019243 methylglyoxal catabolic process to D-lac... BP 2.407e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 1.443e-89
GO:0045087 innate immune response BP 3.410e-86
GO:0006955 immune response BP 8.273e-86
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
sid2-1 cold		 Log2 signal ratio
RGA-GR-DEX
1 261068_at AT1G07450 [NAD(P)-binding Rossmann-fold superfamily protein] 0.373 -0.093
2 247085_at AT5G66310 [ATP binding microtubule motor family protein] 0.279 0.086
3 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 0.274 0.030
4 260241_at AT1G63710 CYP86A7, cytochrome P450, family 86, subfamily A, polypeptide 7 0.257 -0.312
5 251574_at AT3G58100 PDCB5, plasmodesmata callose-binding protein 5 0.249 -0.100
6 249366_at AT5G40610 GPDHp, Glycerol-3-phosphate dehydrogenase plastidic 0.248 -0.029
7 247335_at AT5G63630 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.245 0.036
8 252989_at AT4G38420 sks9, SKU5 similar 9 0.241 -0.144
9 251788_at AT3G55420 unknown 0.239 -0.016
10 254982_at AT4G10470 unknown 0.237 -0.021
11 265711_at AT2G03360 [Glycosyltransferase family 61 protein] 0.232 0.051
12 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 0.224 -0.089
13 259545_at AT1G20560 AAE1, acyl activating enzyme 1 0.219 -0.017
14 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 0.217 0.032
15 264021_at AT2G21200 SAUR7, SMALL AUXIN UPREGULATED RNA 7 0.213 -0.087
16 255782_at AT1G19850 ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24, MP, MONOPTEROS 0.205 0.003
17 245861_at AT5G28300 AtGT2L, GT2L, GT-2Like protein 0.203 -0.137
18 249131_at AT5G43110 APUM14, pumilio 14, PUM14, pumilio 14 0.201 0.027
19 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] 0.199 -0.166
20 261244_at AT1G20150 [Subtilisin-like serine endopeptidase family protein] 0.188 -0.001
21 266297_at AT2G29570 ATPCNA2, A. THALIANA PROLIFERATING CELL NUCLEAR ANTIGEN 2, PCNA2, proliferating cell nuclear antigen 2 0.187 -0.104
22 259380_at AT3G16340 ABCG29, ATP-binding cassette G29, AtABCG29, ATPDR1, PLEIOTROPIC DRUG RESISTANCE 1, PDR1, pleiotropic drug resistance 1 0.187 0.003
23 255032_at AT4G09500 [UDP-Glycosyltransferase superfamily protein] 0.184 -0.024
24 263918_at AT2G36590 ATPROT3, PROLINE TRANSPORTER 3, ProT3, proline transporter 3 0.176 -0.047
25 260141_at AT1G66350 RGL, RGL1, RGA-like 1 0.170 -0.110
26 249788_at AT5G24330 ATXR6, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6, SDG34, SET DOMAIN PROTEIN 34 0.167 0.020
27 261203_at AT1G12845 unknown 0.153 -0.200
28 247974_at AT5G56780 ATET2, ARABIDOPSIS EFFECTOR OF TRANSCRIPTION2, ET2, effector of transcription2 0.148 -0.109
29 245411_at AT4G17240 unknown 0.145 0.048
30 257349_at AT2G30630 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.143 0.014
31 255924_at AT1G22170 [Phosphoglycerate mutase family protein] 0.143 0.019
32 259801_at AT1G72230 [Cupredoxin superfamily protein] 0.140 -0.051
33 248373_at AT5G51860 AGL72, AGAMOUS-like 72 0.139 -0.007
34 250732_at AT5G06480 [Immunoglobulin E-set superfamily protein] 0.137 -0.022
35 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 0.129 0.010
36 261607_at AT1G49660 AtCXE5, carboxyesterase 5, CXE5, carboxyesterase 5 0.128 0.126
37 249551_at AT5G38220 [alpha/beta-Hydrolases superfamily protein] 0.123 -0.022
38 247673_at AT5G60230 ATSEN2, SPLICING ENDONUCLEASE 2, SEN2, splicing endonuclease 2 0.117 0.043
39 267092_at AT2G38120 AtAUX1, AUX1, AUXIN RESISTANT 1, MAP1, MODIFIER OF ARF7/NPH4 PHENOTYPES 1, PIR1, WAV5, WAVY ROOTS 5 0.116 -0.014
40 265171_at AT1G23790 unknown 0.114 0.035
41 261087_at AT1G17350 [NADH:ubiquinone oxidoreductase intermediate-associated protein 30] 0.111 0.038
42 254975_at AT4G10500 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.983 -0.040
43 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 -0.983 -0.202
44 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 -0.950 -0.206
45 248322_at AT5G52760 [Copper transport protein family] -0.919 -0.076
46 261242_at AT1G32960 ATSBT3.3, SBT3.3 -0.893 0.085
47 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 -0.850 -0.048
48 258947_at AT3G01830 [Calcium-binding EF-hand family protein] -0.842 -0.030
49 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 -0.825 -0.002
50 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 -0.816 -0.060
51 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.808 -0.010
52 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 -0.804 0.126
53 249004_at AT5G44570 unknown -0.793 -0.075
54 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.776 -0.063
55 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] -0.767 0.007
56 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein -0.754 -0.172
57 254231_at AT4G23810 ATWRKY53, WRKY53 -0.726 -0.005
58 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A -0.719 -0.079
59 252346_at AT3G48650 [pseudogene] -0.705 0.015
60 259385_at AT1G13470 unknown -0.701 -0.143
61 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 -0.675 0.080
62 263852_at AT2G04450 ATNUDT6, nudix hydrolase homolog 6, ATNUDX6, Arabidopsis thaliana nucleoside diphosphate linked to some moiety X 6, NUDT6, nudix hydrolase homolog 6, NUDX6, nucleoside diphosphates linked to some moiety X 6 -0.658 -0.146
63 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis -0.653 0.059
64 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 -0.653 -0.025
65 246368_at AT1G51890 [Leucine-rich repeat protein kinase family protein] -0.652 -0.025
66 260568_at AT2G43570 CHI, chitinase, putative -0.651 -0.093
67 249770_at AT5G24110 ATWRKY30, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 30, WRKY30, WRKY DNA-binding protein 30 -0.644 0.237
68 247949_at AT5G57220 CYP81F2, cytochrome P450, family 81, subfamily F, polypeptide 2 -0.639 0.035
69 254660_at AT4G18250 [receptor serine/threonine kinase, putative] -0.639 -0.044
70 260804_at AT1G78410 [VQ motif-containing protein] -0.631 -0.039
71 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 -0.631 -0.137
72 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 -0.627 -0.129
73 254093_at AT4G25110 AtMC2, metacaspase 2, AtMCP1c, metacaspase 1c, MC2, metacaspase 2, MCP1c, metacaspase 1c -0.622 0.069
74 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.620 -0.165
75 252345_at AT3G48640 unknown -0.612 -0.030
76 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 -0.598 -0.053
77 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.598 0.017
78 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G -0.595 -0.047
79 259489_at AT1G15790 unknown -0.586 -0.037
80 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 -0.583 -0.035
81 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 -0.582 -0.086