4.0:Information of module
irradiated leaf (cmt 5d)
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.023e-06
GO:0006950 response to stress BP 8.341e-06
GO:0010033 response to organic substance BP 1.284e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0090351 seedling development BP 1.338e-03
GO:0019321 pentose metabolic process BP 1.730e-03
GO:0006935 chemotaxis BP 2.414e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
irradiated leaf (cmt 5d)		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 255064_at AT4G08950 EXO, EXORDIUM 0.530 1.041
2 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.408 0.780
3 265327_at AT2G18210 unknown 0.358 -0.373
4 257478_at AT1G16130 WAKL2, wall associated kinase-like 2 0.346 -0.455
5 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.324 -1.163
6 257076_at AT3G19680 unknown 0.295 0.421
7 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 0.291 -0.107
8 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.281 -0.194
9 260770_at AT1G49200 [RING/U-box superfamily protein] 0.275 -1.192
10 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] 0.272 -0.699
11 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.262 -0.207
12 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.245 -0.399
13 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.227 0.244
14 246926_at AT5G25240 unknown 0.224 -0.547
15 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.215 -0.007
16 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.213 -0.219
17 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.183 0.111
18 248419_at AT5G51550 EXL3, EXORDIUM like 3 0.183 1.276
19 245272_at AT4G17250 unknown 0.171 -0.822
20 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.167 0.373
21 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.158 -0.614
22 252652_at AT3G44720 ADT4, arogenate dehydratase 4 0.156 0.478
23 248322_at AT5G52760 [Copper transport protein family] 0.155 -1.124
24 250914_at AT5G03780 TRFL10, TRF-like 10 0.149 -0.453
25 247467_at AT5G62130 [Per1-like family protein] 0.149 -0.426
26 248607_at AT5G49480 ATCP1, Ca2+-binding protein 1, CP1, Ca2+-binding protein 1 0.148 0.456
27 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.286 -0.310
28 260070_at AT1G73830 BEE3, BR enhanced expression 3 -0.270 -1.161
29 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.245 0.477
30 261247_at AT1G20070 unknown -0.232 -0.094
31 258807_at AT3G04030 MYR2 -0.212 -0.766
32 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.200 0.928
33 256066_at AT1G06980 unknown -0.183 -0.555
34 247191_at AT5G65310 ATHB-5, ATHB5, homeobox protein 5, HB5, homeobox protein 5 -0.179 0.349
35 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.177 0.799
36 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 -0.157 -0.148
37 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.157 1.418
38 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.156 0.240
39 264900_at AT1G23080 ATPIN7, ARABIDOPSIS PIN-FORMED 7, PIN7, PIN-FORMED 7 -0.140 0.597
40 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 -0.137 0.374
41 260639_at AT1G53180 unknown -0.132 0.853
42 256923_at AT3G29635 [HXXXD-type acyl-transferase family protein] -0.118 -0.506
43 246952_at AT5G04820 ATOFP13, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, OFP13, ovate family protein 13 -0.114 1.146
44 249296_at AT5G41310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.105 -1.358
45 245330_at AT4G14930 [Survival protein SurE-like phosphatase/nucleotidase] -0.104 0.294
46 257444_at AT2G12550 NUB1, homolog of human NUB1 -0.099 0.703
47 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.095 -0.068
48 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.087 -0.969
49 253911_at AT4G27300 [S-locus lectin protein kinase family protein] -0.087 -0.569
50 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.086 0.346
51 251224_at AT3G62620 [sucrose-phosphatase-related] -0.086 0.543