4.0:Information of module
irradiated leaf (cmt 5d)
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050896 response to stimulus BP 3.023e-06
GO:0006950 response to stress BP 8.341e-06
GO:0010033 response to organic substance BP 1.284e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0090351 seedling development BP 1.338e-03
GO:0019321 pentose metabolic process BP 1.730e-03
GO:0006935 chemotaxis BP 2.414e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
irradiated leaf (cmt 5d)		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 255064_at AT4G08950 EXO, EXORDIUM 0.530 -0.063
2 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 0.408 -0.059
3 265327_at AT2G18210 unknown 0.358 0.311
4 257478_at AT1G16130 WAKL2, wall associated kinase-like 2 0.346 -0.003
5 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.324 -0.043
6 257076_at AT3G19680 unknown 0.295 -0.024
7 252681_at AT3G44350 anac061, NAC domain containing protein 61, NAC061, NAC domain containing protein 61 0.291 -0.353
8 256337_at AT1G72060 [serine-type endopeptidase inhibitors] 0.281 0.028
9 260770_at AT1G49200 [RING/U-box superfamily protein] 0.275 -0.035
10 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] 0.272 -0.101
11 265597_at AT2G20142 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.262 -0.009
12 252131_at AT3G50930 BCS1, cytochrome BC1 synthesis 0.245 -0.043
13 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.227 -0.140
14 246926_at AT5G25240 unknown 0.224 0.008
15 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.215 -0.004
16 252234_at AT3G49780 ATPSK3 (FORMER SYMBOL), ATPSK4, phytosulfokine 4 precursor, PSK4, phytosulfokine 4 precursor 0.213 0.328
17 248311_at AT5G52570 B2, BCH2, BETA CAROTENOID HYDROXYLASE 2, BETA-OHASE 2, beta-carotene hydroxylase 2, CHY2 0.183 -0.055
18 248419_at AT5G51550 EXL3, EXORDIUM like 3 0.183 0.209
19 245272_at AT4G17250 unknown 0.171 -0.228
20 248199_at AT5G54170 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.167 0.294
21 245449_at AT4G16870 [copia-like retrotransposon family, has a 0. P-value blast match to dbj|BAA78426.1| polyprotein (AtRE2-1) (Arabidopsis thaliana) (Ty1_Copia-element)] 0.158 0.192
22 252652_at AT3G44720 ADT4, arogenate dehydratase 4 0.156 -0.436
23 248322_at AT5G52760 [Copper transport protein family] 0.155 -0.112
24 250914_at AT5G03780 TRFL10, TRF-like 10 0.149 -0.049
25 247467_at AT5G62130 [Per1-like family protein] 0.149 -0.132
26 248607_at AT5G49480 ATCP1, Ca2+-binding protein 1, CP1, Ca2+-binding protein 1 0.148 -0.219
27 251977_at AT3G53250 SAUR57, SMALL AUXIN UPREGULATED RNA 57 -0.286 -0.074
28 260070_at AT1G73830 BEE3, BR enhanced expression 3 -0.270 -0.493
29 252970_at AT4G38850 ATSAUR15, ARABIDOPSIS THALIANA SMALL AUXIN UPREGULATED 15, SAUR-AC1, ARABIDOPSIS COLUMBIA SAUR GENE 1, SAUR15, SMALL AUXIN UPREGULATED 15, SAUR_AC1, SMALL AUXIN UP RNA 1 FROM ARABIDOPSIS THALIANA ECOTYPE COLUMBIA -0.245 0.004
30 261247_at AT1G20070 unknown -0.232 -0.052
31 258807_at AT3G04030 MYR2 -0.212 -0.060
32 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] -0.200 0.092
33 256066_at AT1G06980 unknown -0.183 -0.056
34 247191_at AT5G65310 ATHB-5, ATHB5, homeobox protein 5, HB5, homeobox protein 5 -0.179 -0.164
35 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.177 -0.204
36 256062_at AT1G07090 LSH6, LIGHT SENSITIVE HYPOCOTYLS 6 -0.157 0.112
37 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.157 -0.065
38 266613_at AT2G14900 [Gibberellin-regulated family protein] -0.156 -0.079
39 264900_at AT1G23080 ATPIN7, ARABIDOPSIS PIN-FORMED 7, PIN7, PIN-FORMED 7 -0.140 -0.178
40 267628_at AT2G42280 AKS3, ABA-responsive kinase substrate 3, FBH4, FLOWERING BHLH 4 -0.137 -0.062
41 260639_at AT1G53180 unknown -0.132 0.019
42 256923_at AT3G29635 [HXXXD-type acyl-transferase family protein] -0.118 -0.162
43 246952_at AT5G04820 ATOFP13, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 13, OFP13, ovate family protein 13 -0.114 0.058
44 249296_at AT5G41310 [P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain] -0.105 -0.036
45 245330_at AT4G14930 [Survival protein SurE-like phosphatase/nucleotidase] -0.104 0.138
46 257444_at AT2G12550 NUB1, homolog of human NUB1 -0.099 0.009
47 254318_at AT4G22530 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.095 -0.568
48 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.087 -0.188
49 253911_at AT4G27300 [S-locus lectin protein kinase family protein] -0.087 0.112
50 256299_at AT1G69530 AT-EXP1, ATEXP1, ATEXPA1, expansin A1, ATHEXP ALPHA 1.2, EXP1, EXPANSIN 1, EXPA1, expansin A1 -0.086 -0.021
51 251224_at AT3G62620 [sucrose-phosphatase-related] -0.086 -0.035