4.0:Information of module
irradiated leaf (cmt 1d)
In comparison with csn3-1 dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0002376 immune system process BP 3.531e-24
GO:0045087 innate immune response BP 2.530e-22
GO:0006955 immune response BP 4.231e-22
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006732 coenzyme metabolic process BP 1.953e-04
GO:0051186 cofactor metabolic process BP 3.272e-04
GO:0006084 acetyl-CoA metabolic process BP 1.153e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
irradiated leaf (cmt 1d)		 Log2 signal ratio
csn3-1 dark
1 255500_at AT4G02390 APP, poly(ADP-ribose) polymerase, PARP2, poly(ADP-ribose) polymerase 2, PP, poly(ADP-ribose) polymerase 1.026 0.893
2 253240_at AT4G34510 KCS17, 3-ketoacyl-CoA synthase 17 0.929 0.865
3 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] 0.928 0.962
4 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 0.838 0.665
5 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.764 0.292
6 254287_at AT4G22960 unknown 0.758 0.489
7 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 0.691 0.739
8 250914_at AT5G03780 TRFL10, TRF-like 10 0.674 0.657
9 250024_at AT5G18270 ANAC087, Arabidopsis NAC domain containing protein 87 0.656 0.311
10 252539_at AT3G45730 unknown 0.655 0.064
11 254443_at AT4G21070 ATBRCA1, ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, BRCA1, breast cancer susceptibility1 0.651 1.175
12 248086_at AT5G55490 ATGEX1, GAMETE EXPRESSED PROTEIN 1, GEX1, gamete expressed protein 1 0.635 0.518
13 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.627 -0.160
14 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.623 -0.083
15 261065_at AT1G07500 SMR5, SIAMESE-RELATED 5 0.613 0.706
16 248321_at AT5G52740 [Copper transport protein family] 0.606 0.365
17 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 0.602 -0.356
18 257100_at AT3G25010 AtRLP41, receptor like protein 41, RLP41, receptor like protein 41 0.596 0.355
19 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.575 0.263
20 254565_at AT4G19130 [Replication factor-A protein 1-related] 0.568 0.807
21 266070_at AT2G18660 AtPNP-A, PNP-A, plant natriuretic peptide A 0.533 0.858
22 254242_at AT4G23200 CRK12, cysteine-rich RLK (RECEPTOR-like protein kinase) 12 0.518 0.631
23 245137_at AT2G45460 [SMAD/FHA domain-containing protein ] 0.506 0.167
24 267567_at AT2G30770 CYP71A13, cytochrome P450, family 71, subfamily A, polypeptide 13 0.499 -0.005
25 260568_at AT2G43570 CHI, chitinase, putative 0.490 -0.227
26 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 0.480 0.677
27 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 0.478 -0.749
28 261086_at AT1G17460 TRFL3, TRF-like 3 0.478 0.319
29 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.474 0.726
30 257185_at AT3G13100 ABCC7, ATP-binding cassette C7, ATMRP7, multidrug resistance-associated protein 7, MRP7, MRP7, multidrug resistance-associated protein 7 0.454 0.418
31 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.454 0.075
32 260225_at AT1G74590 ATGSTU10, GLUTATHIONE S-TRANSFERASE TAU 10, GSTU10, glutathione S-transferase TAU 10 0.446 -0.802
33 263133_at AT1G78450 [SOUL heme-binding family protein] -0.353 -0.007
34 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 -0.349 0.155
35 265539_at AT2G15830 unknown -0.310 -0.420
36 250478_at AT5G10250 DOT3, DEFECTIVELY ORGANIZED TRIBUTARIES 3 -0.251 0.061
37 256577_at AT3G28220 [TRAF-like family protein] -0.241 0.088
38 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 -0.228 -0.045
39 260748_at AT1G49210 [RING/U-box superfamily protein] -0.223 -0.169
40 250233_at AT5G13460 IQD11, IQ-domain 11 -0.207 -0.065
41 250228_at AT5G13840 CCS52B, cell cycle switch protein 52 B, FZR3, FIZZY-related 3 -0.205 0.121
42 266516_at AT2G47880 [Glutaredoxin family protein] -0.205 0.180
43 257750_at AT3G18800 unknown -0.201 0.075
44 253832_at AT4G27654 unknown -0.197 0.050
45 252047_at AT3G52490 SMXL3, SMAX1-like 3 -0.195 -0.579
46 256418_at AT3G06160 [AP2/B3-like transcriptional factor family protein] -0.179 -0.007
47 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 -0.164 0.038
48 257794_at AT3G27050 unknown -0.163 -0.225
49 249060_at AT5G44560 VPS2.2 -0.162 0.147
50 261761_at AT1G15660 CENP-C, CENP-C HOMOLOGUE, CENP-C, centromere protein C -0.154 0.395
51 255265_at AT4G05190 ATK5, kinesin 5 -0.153 0.093
52 245980_at AT5G13140 [Pollen Ole e 1 allergen and extensin family protein] -0.145 0.102
53 257398_at AT2G01990 unknown -0.140 -0.311
54 257959_at AT3G25560 AtNIK2, NIK2, NSP-interacting kinase 2 -0.137 -0.070
55 251373_at AT3G60530 GATA4, GATA transcription factor 4 -0.137 -0.384
56 255012_at AT4G10030 [alpha/beta-Hydrolases superfamily protein] -0.137 -0.133
57 253207_at AT4G34770 SAUR1, SMALL AUXIN UPREGULATED RNA 1 -0.135 -0.506
58 250673_at AT5G07070 CIPK2, CBL-interacting protein kinase 2, SnRK3.2, SNF1-RELATED PROTEIN KINASE 3.2 -0.135 -0.134
59 259789_at AT1G29395 COR413-TM1, COLD REGULATED 314 THYLAKOID MEMBRANE 1, COR413IM1, COLD REGULATED 314 INNER MEMBRANE 1, COR414-TM1, cold regulated 414 thylakoid membrane 1 -0.134 -1.113
60 259763_at AT1G77630 LYM3, lysin-motif (LysM) domain protein 3, LYP3, LysM-containing receptor protein 3 -0.131 -0.115
61 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 -0.130 -0.198
62 267465_at AT2G19170 SLP3, subtilisin-like serine protease 3 -0.129 -0.118
63 259858_at AT1G68400 [leucine-rich repeat transmembrane protein kinase family protein] -0.127 -0.196