4.0:Information of module
high R/FR
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042254 ribosome biogenesis BP 9.657e-05
GO:0022613 ribonucleoprotein complex biogenesis BP 1.117e-04
GO:0006412 translation BP 1.312e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006457 protein folding BP 8.490e-04
GO:0006996 organelle organization BP 1.580e-03
GO:0044260 cellular macromolecule metabolic process BP 3.117e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
high R/FR		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 255159_at AT4G07810 [copia-like retrotransposon family, has a 7.1e-230 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.335 0.122
2 259999_at AT1G68080 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.256 0.079
3 254714_at AT4G13480 AtMYB79, myb domain protein 79, MYB79, myb domain protein 79 0.254 0.001
4 249113_at AT5G43790 [Pentatricopeptide repeat (PPR) superfamily protein] 0.250 0.151
5 245944_at AT5G19520 ATMSL9, MSL9, mechanosensitive channel of small conductance-like 9 0.243 0.007
6 255877_at AT2G40460 [Major facilitator superfamily protein] 0.238 -0.019
7 254364_at AT4G22020 [pseudogene] 0.236 -0.006
8 262352_at AT1G64250 [Mutator-like transposase family, has a 2.2e-20 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] 0.230 -0.038
9 245393_at AT4G16260 [Glycosyl hydrolase superfamily protein] 0.226 -0.300
10 258263_at AT3G15780 unknown 0.216 -0.091
11 252627_at AT3G44950 [glycine-rich protein] 0.208 0.033
12 246848_at AT5G26840 unknown 0.207 -0.137
13 263290_at AT2G10930 unknown 0.204 0.033
14 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] 0.203 0.211
15 252755_at AT3G43530 unknown 0.194 0.148
16 263059_at AT2G07660 [gypsy-like retrotransposon family, has a 2.8e-303 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] 0.190 0.078
17 267359_at AT2G40020 [Nucleolar histone methyltransferase-related protein] 0.190 -0.119
18 255768_at AT1G16705 [p300/CBP acetyltransferase-related protein-related] 0.185 0.004
19 256147_at AT1G55080 MED9 -0.309 0.025
20 264115_at AT2G31290 [Ubiquitin carboxyl-terminal hydrolase family protein] -0.306 0.080
21 253667_at AT4G30170 [Peroxidase family protein] -0.292 -0.121
22 264610_at AT1G04645 [Plant self-incompatibility protein S1 family] -0.289 0.034
23 257047_at AT3G19570 QWRF1, QWRF domain containing 1, SCO3, SNOWY COTYLEDON 3 -0.271 -0.081
24 247749_at AT5G58850 ATMYB119, MYB DOMAIN PROTEIN 119, MYB119, myb domain protein 119 -0.269 -0.039
25 259631_at AT1G56410 ERD2, EARLY-RESPONSIVE TO DEHYDRATION 2, HSP70T-1, HEAT SHOCK PROTEIN 70T-1 -0.250 -0.059
26 264401_at AT1G61720 BAN, BANYULS -0.234 -0.102
27 250492_at AT5G09790 ATXR5, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5, PDE336, PIGMENT DEFECTIVE 336, SDG15, SETDOMAIN GROUP 15 -0.230 0.012
28 261712_at AT1G32780 [GroES-like zinc-binding dehydrogenase family protein] -0.225 0.081
29 245467_at AT4G16610 [C2H2-like zinc finger protein] -0.224 -0.015
30 256282_at AT3G12550 FDM3, factor of DNA methylation 3 -0.224 0.023
31 255352_at AT4G03860 [transposon protein -related, similar to athila retroelement] -0.213 -0.177
32 247421_at AT5G62800 [Protein with RING/U-box and TRAF-like domains] -0.213 -0.050
33 256522_at AT1G66160 ATCMPG1, CMPG1, CYS, MET, PRO, and GLY protein 1 -0.205 -0.106
34 248484_at AT5G51030 [NAD(P)-binding Rossmann-fold superfamily protein] -0.204 0.024
35 245108_at AT2G41510 ATCKX1, CYTOKININ OXIDASE/DEHYDROGENASE 1, CKX1, cytokinin oxidase/dehydrogenase 1 -0.202 -0.113