4.0:Information of module
opr3 JA 2 h
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009753 response to jasmonic acid BP 5.683e-29
GO:0009694 jasmonic acid metabolic process BP 9.013e-29
GO:0009695 jasmonic acid biosynthetic process BP 1.639e-23
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0071478 cellular response to radiation BP 4.432e-04
GO:0071482 cellular response to light stimulus BP 4.432e-04
GO:0009893 positive regulation of metabolic process BP 9.281e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
opr3 JA 2 h		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 1.180 0.033
2 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 1.073 0.439
3 266901_at AT2G34600 JAZ7, jasmonate-zim-domain protein 7, TIFY5B 1.048 -0.070
4 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.995 -0.007
5 252870_at AT4G39940 AKN2, APS-kinase 2, APK2, ADENOSINE-5'-PHOSPHOSULFATE (APS) KINASE 2 0.877 -0.024
6 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.858 0.266
7 252487_at AT3G46660 UGT76E12, UDP-glucosyl transferase 76E12 0.847 -0.030
8 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.846 0.085
9 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A 0.823 -0.237
10 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.788 0.068
11 250264_at AT5G12890 [UDP-Glycosyltransferase superfamily protein] 0.777 -0.096
12 266456_at AT2G22770 NAI1 0.757 0.421
13 249349_at AT5G40350 AtMYB24, myb domain protein 24, MYB24, myb domain protein 24 0.740 -0.067
14 258114_at AT3G14660 CYP72A13, cytochrome P450, family 72, subfamily A, polypeptide 13 0.705 -0.087
15 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 0.686 -0.076
16 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.678 -0.083
17 260429_at AT1G72450 JAZ6, jasmonate-zim-domain protein 6, TIFY11B, TIFY DOMAIN PROTEIN 11B 0.668 -0.178
18 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.665 0.028
19 263714_at AT2G20610 ALF1, ABERRANT LATERAL ROOT FORMATION 1, HLS3, HOOKLESS 3, RTY, ROOTY, RTY1, ROOTY 1, SUR1, SUPERROOT 1 0.652 0.210
20 266326_at AT2G46650 ATCB5-C, ARABIDOPSIS CYTOCHROME B5 ISOFORM C, B5 #1, CB5-C, cytochrome B5 isoform C, CYTB5-C 0.633 -0.025
21 255786_at AT1G19670 ATCLH1, chlorophyllase 1, ATHCOR1, CORONATINE-INDUCED PROTEIN 1, CLH1, chlorophyllase 1, CORI1, CORONATINE-INDUCED PROTEIN 1 0.628 -0.089
22 249817_at AT5G23820 ML3, MD2-related lipid recognition 3 0.607 -0.130
23 263184_at AT1G05560 UGT1, UDP-GLUCOSE TRANSFERASE 1, UGT75B1, UDP-glucosyltransferase 75B1 0.601 0.040
24 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] 0.596 -0.038
25 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.592 -0.136
26 260205_at AT1G70700 JAZ9, JASMONATE-ZIM-DOMAIN PROTEIN 9, TIFY7 0.569 -0.213
27 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.538 0.038
28 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] 0.529 -0.076
29 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.528 0.022
30 254232_at AT4G23600 CORI3, CORONATINE INDUCED 1, JR2, JASMONIC ACID RESPONSIVE 2 0.528 -0.344
31 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.522 -0.000
32 248643_at AT5G49130 [MATE efflux family protein] 0.514 0.057
33 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.512 -0.149
34 250960_at AT5G02940 unknown 0.504 0.034
35 266299_at AT2G29450 AT103-1A, ATGSTU1, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 1, ATGSTU5, glutathione S-transferase tau 5, GSTU5, glutathione S-transferase tau 5 0.496 0.020
36 251524_at AT3G58990 IPMI1, isopropylmalate isomerase 1 0.482 0.112
37 253534_at AT4G31500 ATR4, ALTERED TRYPTOPHAN REGULATION 4, CYP83B1, cytochrome P450, family 83, subfamily B, polypeptide 1, RED1, RED ELONGATED 1, RNT1, RUNT 1, SUR2, SUPERROOT 2 0.482 0.022
38 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 0.482 0.098
39 261443_at AT1G28480 GRX480, roxy19 0.482 -0.095
40 265680_at AT2G32150 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.470 -0.081
41 255527_at AT4G02360 unknown 0.464 0.179
42 259518_at AT1G20510 OPCL1, OPC-8:0 CoA ligase1 0.461 -0.050
43 264873_at AT1G24100 UGT74B1, UDP-glucosyl transferase 74B1 0.456 -0.112
44 249025_at AT5G44720 [Molybdenum cofactor sulfurase family protein] 0.452 -0.014
45 260438_at AT1G68290 ENDO2, endonuclease 2 0.443 0.123
46 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.439 0.080
47 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.438 0.038
48 264289_at AT1G61890 [MATE efflux family protein] 0.427 0.249
49 263231_at AT1G05680 UGT74E2, Uridine diphosphate glycosyltransferase 74E2 0.416 0.316
50 260387_at AT1G74100 ATSOT16, SULFOTRANSFERASE 16, ATST5A, ARABIDOPSIS SULFOTRANSFERASE 5A, CORI-7, CORONATINE INDUCED-7, SOT16, sulfotransferase 16 0.413 0.006
51 264588_at AT2G17730 NIP2, NEP-interacting protein 2 0.408 -0.029
52 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -0.331 0.054
53 261684_at AT1G47400 unknown -0.283 -0.201
54 263412_at AT2G28720 [Histone superfamily protein] -0.270 -0.078
55 251665_at AT3G57040 ARR9, response regulator 9, ATRR4, RESPONSE REGULATOR 4 -0.230 -0.098
56 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] -0.214 0.012
57 248558_at AT5G49990 [Xanthine/uracil permease family protein] -0.195 -0.087
58 253411_at AT4G32980 ATH1, homeobox gene 1 -0.193 0.028
59 255438_at AT4G03070 AOP, AOP1, AOP1.1 -0.187 0.072
60 253812_at AT4G28240 [Wound-responsive family protein] -0.162 -0.050
61 253263_at AT4G34000 ABF3, abscisic acid responsive elements-binding factor 3, AtABF3, DPBF5, DC3 PROMOTER-BINDING FACTOR 5 -0.150 -0.289
62 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.148 -0.128
63 263104_at AT2G05120 [Nucleoporin, Nup133/Nup155-like] -0.144 0.030
64 245761_at AT1G66890 unknown -0.142 0.044
65 265912_at AT2G25570 [binding] -0.136 -0.086
66 259993_at AT1G67960 POD1, POLLEN DEFECTIVE IN GUIDANCE 1 -0.136 -0.044
67 249948_at AT5G19210 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.136 0.235
68 264360_at AT1G03310 AtBE2, ATISA2, ARABIDOPSIS THALIANA ISOAMYLASE 2, BE2, BRANCHING ENZYME 2, DBE1, debranching enzyme 1, ISA2 -0.127 -0.152
69 251929_at AT3G53920 SIG3, SIGMA FACTOR 3, SIGC, RNApolymerase sigma-subunit C -0.121 -0.196
70 264799_at AT1G08550 AVDE1, ARABIDOPSIS VIOLAXANTHIN DE-EPOXIDASE 1, NPQ1, non-photochemical quenching 1 -0.120 0.023
71 261062_at AT1G07530 ATGRAS2, ARABIDOPSIS THALIANA GRAS (GAI, RGA, SCR) 2, GRAS2, GRAS (GAI, RGA, SCR) 2, SCL14, SCARECROW-like 14 -0.116 -0.019
72 249231_at AT5G42030 ABIL4, ABL interactor-like protein 4 -0.116 0.285
73 258673_at AT3G08620 [RNA-binding KH domain-containing protein] -0.116 -0.030
74 260462_at AT1G10970 ATZIP4, ZIP4, zinc transporter 4 precursor -0.113 -0.029
75 262067_at AT1G80060 [Ubiquitin-like superfamily protein] -0.113 -0.097
76 261652_at AT1G01860 PFC1, PALEFACE 1 -0.112 0.208
77 264757_at AT1G61360 [S-locus lectin protein kinase family protein] -0.110 0.037
78 253665_at AT4G30230 unknown -0.109 0.039
79 248204_at AT5G54280 ATM2, myosin 2, ATM4, ARABIDOPSIS THALIANA MYOSIN 4, ATMYOS1, ARABIDOPSIS THALIANA MYOSIN 1 -0.105 0.042
80 248319_at AT5G52710 [Copper transport protein family] -0.104 0.042
81 253157_at AT4G35740 ATRECQ3, A. THALIANA RECQ HELICASE 3, RecQl3 -0.103 -0.119
82 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.101 -0.057
83 258355_at AT3G14330 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.100 -0.031
84 264142_at AT1G78930 [Mitochondrial transcription termination factor family protein] -0.095 -0.104
85 255522_at AT4G02260 AT-RSH1, RELA-SPOT HOMOLOG 1, ATRSH1, RELA/SPOT HOMOLOG 1, RSH1, RELA/SPOT homolog 1 -0.094 -0.065
86 265248_at AT2G43010 AtPIF4, PIF4, phytochrome interacting factor 4, SRL2 -0.090 -0.082
87 264320_at AT1G04090 unknown -0.089 -0.000
88 246389_at AT1G77380 AAP3, amino acid permease 3, ATAAP3 -0.089 0.101
89 246180_at AT5G20840 [Phosphoinositide phosphatase family protein] -0.088 0.026
90 248504_at AT5G50480 NF-YC6, nuclear factor Y, subunit C6 -0.087 -0.046
91 258339_at AT3G16120 [Dynein light chain type 1 family protein] -0.087 0.065
92 250955_at AT5G03190 CPUORF47, conserved peptide upstream open reading frame 47 -0.087 0.020
93 255260_at AT4G05040 [ankyrin repeat family protein] -0.086 0.157
94 266126_at AT2G45040 [Matrixin family protein] -0.085 -0.196
95 261945_at AT1G64530 NLP6, NIN-like protein 6 -0.083 -0.011
96 263257_at AT1G10520 AtPol{lambda}, Pol{lambda}, DNA polymerase {lambda} -0.080 -0.000
97 261168_at AT1G04945 [HIT-type Zinc finger family protein] -0.080 -0.077
98 262076_at AT1G59580 ATMPK2, mitogen-activated protein kinase homolog 2, MPK2, mitogen-activated protein kinase homolog 2 -0.078 0.057
99 253892_at AT4G27620 unknown -0.077 0.044
100 248003_at AT5G56220 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.075 -0.141
101 256410_at AT1G66630 [Protein with RING/U-box and TRAF-like domains] -0.071 0.012