4.0:Information of module
vte1-1 3d vernalization
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.916e-07
GO:1901700 response to oxygen-containing compound BP 2.468e-07
GO:0009266 response to temperature stimulus BP 8.701e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009719 response to endogenous stimulus BP 2.607e-09
GO:0009725 response to hormone BP 2.440e-08
GO:0010363 regulation of plant-type hypersensitive ... BP 1.306e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
vte1-1 3d vernalization		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] 0.564 -0.135
2 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 0.469 0.078
3 260978_at AT1G53540 [HSP20-like chaperones superfamily protein] 0.448 -0.098
4 256176_at AT1G51640 ATEXO70G2, exocyst subunit exo70 family protein G2, EXO70G2, exocyst subunit exo70 family protein G2 0.414 -0.076
5 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein 0.413 -0.014
6 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 0.413 -0.267
7 257748_at AT3G18710 ATPUB29, ARABIDOPSIS THALIANA PLANT U-BOX 29, PUB29, plant U-box 29 0.390 0.047
8 245967_at AT5G19800 [hydroxyproline-rich glycoprotein family protein] 0.386 -0.048
9 254839_at AT4G12400 Hop3, Hop3 0.386 -0.029
10 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 0.372 -0.120
11 246125_at AT5G19875 unknown 0.368 0.068
12 264029_at AT2G03720 MRH6, morphogenesis of root hair 6 0.357 -0.011
13 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] 0.351 0.026
14 264643_at AT1G08990 GUX5, Glucuronic Acid Substitution of Xylan 5, PGSIP5, plant glycogenin-like starch initiation protein 5 0.346 0.711
15 267089_at AT2G38300 [myb-like HTH transcriptional regulator family protein] 0.318 0.017
16 267372_at AT2G26290 ARSK1, root-specific kinase 1 0.310 -0.087
17 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.310 -0.032
18 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 0.306 -0.018
19 249868_at AT5G23030 TET12, tetraspanin12 0.304 0.170
20 259735_at AT1G64405 unknown 0.301 -0.074
21 250304_at AT5G12110 [Glutathione S-transferase, C-terminal-like] 0.292 -0.097
22 251668_at AT3G57010 [Calcium-dependent phosphotriesterase superfamily protein] 0.289 0.078
23 262128_at AT1G52690 LEA7, LATE EMBRYOGENESIS ABUNDANT 7 0.288 0.084
24 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.282 0.025
25 265823_at AT2G35760 [Uncharacterised protein family (UPF0497)] 0.280 0.002
26 255488_at AT4G02630 [Protein kinase superfamily protein] 0.274 -0.158
27 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] 0.269 -0.054
28 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.268 -0.025
29 253571_at AT4G31000 [Calmodulin-binding protein] 0.267 0.209
30 260666_at AT1G19300 ATGATL1, GATL1, GALACTURONOSYLTRANSFERASE-LIKE 1, GLZ1, GAOLAOZHUANGREN 1, PARVUS, PARVUS 0.264 0.119
31 260423_at AT1G72470 ATEXO70D1, exocyst subunit exo70 family protein D1, EXO70D1, exocyst subunit exo70 family protein D1 0.261 -0.219
32 255891_at AT1G17870 ATEGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3, EGY3, ETHYLENE-DEPENDENT GRAVITROPISM-DEFICIENT AND YELLOW-GREEN-LIKE 3 0.259 -0.160
33 264902_at AT1G23060 MDP40, MICROTUBULE DESTABILIZING PROTEIN 40 0.255 -0.092
34 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 0.255 0.081
35 250744_at AT5G05840 unknown 0.254 0.056
36 248212_at AT5G54020 [Cysteine/Histidine-rich C1 domain family protein] 0.249 -0.033
37 258315_at AT3G16175 [Thioesterase superfamily protein] 0.248 -0.069
38 254281_at AT4G22840 [Sodium Bile acid symporter family] 0.229 0.079
39 251299_at AT3G61950 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.229 0.043
40 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.227 0.018
41 250506_at AT5G09930 ABCF2, ATP-binding cassette F2 0.226 -0.142
42 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.223 -0.070
43 266968_at AT2G39360 [Protein kinase superfamily protein] 0.220 0.036
44 264481_at AT1G77200 [Integrase-type DNA-binding superfamily protein] 0.196 -0.161
45 251600_at AT3G57710 [Protein kinase superfamily protein] 0.196 0.117
46 261684_at AT1G47400 unknown 0.194 -0.201
47 251521_at AT3G59420 ACR4, crinkly4, CR4, crinkly4 0.192 -0.077
48 249047_at AT5G44410 [FAD-binding Berberine family protein] 0.191 -0.167
49 263629_at AT2G04850 [Auxin-responsive family protein] 0.188 0.138
50 249619_at AT5G37500 GORK, gated outwardly-rectifying K+ channel 0.186 0.027
51 251197_at AT3G62960 [Thioredoxin superfamily protein] 0.185 0.073
52 259832_at AT1G69580 [Homeodomain-like superfamily protein] 0.184 -0.100
53 246021_at AT5G21100 [Plant L-ascorbate oxidase] 0.181 -0.019
54 253145_at AT4G35560 DAW1, DUO1-activated WD40 1 0.179 0.046
55 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.177 -0.240
56 247354_at AT5G63590 ATFLS3, FLS3, flavonol synthase 3 0.173 0.160
57 250998_at AT5G02620 ANK1, ankyrin-like1, ATANK1 0.172 0.152
58 247877_at AT5G57740 XBAT32, XB3 ortholog 2 in Arabidopsis thaliana 0.171 -0.087
59 264005_at AT2G22470 AGP2, arabinogalactan protein 2, ATAGP2 0.171 0.180
60 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 0.171 0.219
61 259606_at AT1G27920 MAP65-8, microtubule-associated protein 65-8 0.167 -0.095
62 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 0.167 0.038
63 255647_at AT4G00900 ATECA2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ECA2, ER-type Ca2+-ATPase 2 0.167 -0.088
64 257124_at AT3G20040 ATHXK4, HKL2, HEXOKINASE-LIKE 2 0.167 -0.012
65 251196_at AT3G62950 [Thioredoxin superfamily protein] -0.757 -0.255
66 247478_at AT5G62360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.547 -0.099
67 253394_at AT4G32770 ATSDX1, SUCROSE EXPORT DEFECTIVE 1, VTE1, VITAMIN E DEFICIENT 1 -0.500 -0.005
68 249741_at AT5G24470 APRR5, pseudo-response regulator 5, PRR5, pseudo-response regulator 5 -0.479 -0.091
69 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] -0.469 -0.136
70 255331_at AT4G04330 AtRbcX1, RbcX1, homologue of cyanobacterial RbcX 1 -0.449 0.111
71 252539_at AT3G45730 unknown -0.428 -0.125
72 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 -0.408 -0.005
73 245504_at AT4G15660 [Thioredoxin superfamily protein] -0.406 0.052
74 254197_at AT4G24040 ATTRE1, TRE1, trehalase 1 -0.361 -0.074
75 262505_at AT1G21680 [DPP6 N-terminal domain-like protein] -0.349 0.263
76 245668_at AT1G28330 AtDRM1, DRM1, DORMANCY-ASSOCIATED PROTEIN 1, DYL1, dormancy-associated protein-like 1 -0.347 -0.015
77 250223_at AT5G14070 ROXY2 -0.344 0.017
78 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 -0.336 0.028
79 249128_at AT5G43440 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.323 0.114
80 248225_at AT5G53740 unknown -0.293 -0.069
81 266617_at AT2G29670 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.290 -0.059
82 264379_at AT2G25200 unknown -0.287 0.277
83 251642_at AT3G57520 AtSIP2, seed imbibition 2, RS2, raffinose synthase 2, SIP2, seed imbibition 2 -0.286 -0.107
84 251022_at AT5G02150 Fes1C, Fes1C -0.286 -0.123
85 262211_at AT1G74930 ORA47 -0.281 -0.276
86 263133_at AT1G78450 [SOUL heme-binding family protein] -0.279 0.035
87 252170_at AT3G50480 HR4, homolog of RPW8 4 -0.279 -0.212
88 264767_at AT1G61380 SD1-29, S-domain-1 29 -0.276 -0.034
89 256676_at AT3G52180 ATPTPKIS1, ATSEX4, DSP4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, SEX4, STARCH-EXCESS 4 -0.266 -0.002
90 260991_at AT1G12160 [Flavin-binding monooxygenase family protein] -0.261 -0.025
91 254665_at AT4G18340 [Glycosyl hydrolase superfamily protein] -0.259 -0.177
92 266225_at AT2G28900 ATOEP16-1, outer plastid envelope protein 16-1, ATOEP16-L, OUTER PLASTID ENVELOPE PROTEIN 16-L, OEP16, outer envelope protein 16, OEP16-1, outer plastid envelope protein 16-1 -0.257 -0.106
93 261941_at AT1G22490 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.255 -0.075
94 254571_at AT4G19370 unknown -0.255 -0.033
95 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] -0.253 0.059
96 260904_at AT1G02450 NIMIN-1, NIMIN1, NIM1-interacting 1 -0.253 0.032
97 261248_at AT1G20030 [Pathogenesis-related thaumatin superfamily protein] -0.252 -0.065
98 263914_at AT2G36400 AtGRF3, growth-regulating factor 3, GRF3, growth-regulating factor 3 -0.243 -0.025
99 267461_at AT2G33830 AtDRM2, DRM2, dormancy associated gene 2 -0.239 -0.024
100 256914_at AT3G23880 [F-box and associated interaction domains-containing protein] -0.238 -0.091
101 249017_at AT5G44760 [C2 domain-containing protein] -0.235 -0.028
102 253061_at AT4G37610 BT5, BTB and TAZ domain protein 5 -0.233 -0.013
103 257398_at AT2G01990 unknown -0.233 -0.136
104 249791_at AT5G23810 AAP7, amino acid permease 7 -0.233 -0.019
105 245224_at AT3G29796 unknown -0.232 0.046
106 251195_at AT3G62930 [Thioredoxin superfamily protein] -0.231 -0.024
107 252573_at AT3G45260 [C2H2-like zinc finger protein] -0.228 -0.160
108 255599_at AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 -0.227 -0.063
109 260140_at AT1G66390 ATMYB90, MYB90, myb domain protein 90, PAP2, PRODUCTION OF ANTHOCYANIN PIGMENT 2 -0.225 -0.038
110 259015_at AT3G07350 unknown -0.224 -0.021
111 261272_at AT1G26665 [Mediator complex, subunit Med10] -0.223 0.144
112 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.223 -0.001
113 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 -0.223 0.198
114 261213_at AT1G12970 PIRL3, plant intracellular ras group-related LRR 3 -0.222 0.014
115 246755_at AT5G27920 [F-box family protein] -0.221 -0.059
116 263475_at AT2G31945 unknown -0.221 0.041
117 246941_at AT5G25415 unknown -0.219 -0.100
118 261736_at AT1G47810 [F-box and associated interaction domains-containing protein] -0.219 0.287
119 266839_at AT2G25930 ELF3, EARLY FLOWERING 3, PYK20 -0.219 0.015
120 248855_at AT5G46590 anac096, NAC domain containing protein 96, NAC096, NAC domain containing protein 96 -0.216 -0.038
121 257776_at AT3G29190 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.216 -0.063
122 261028_at AT1G26620 unknown -0.213 -0.041
123 249996_at AT5G18600 [Thioredoxin superfamily protein] -0.212 -0.236
124 263438_at AT2G28660 [Chloroplast-targeted copper chaperone protein] -0.212 0.036
125 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 -0.211 0.253
126 262301_at AT1G70880 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.208 0.067
127 254712_at AT4G18080 unknown -0.208 0.113