4.0:Information of module
vtc2 mature somatic embryo
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010243 response to organonitrogen compound BP 1.007e-20
GO:0010200 response to chitin BP 1.201e-20
GO:1901700 response to oxygen-containing compound BP 7.343e-19
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009888 tissue development BP 4.885e-11
GO:0048507 meristem development BP 1.344e-09
GO:0048731 system development BP 1.512e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
vtc2 mature somatic embryo		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 1.080 -0.886
2 256497_at AT1G31580 CXC750, ECS1 0.980 0.555
3 250098_at AT5G17350 unknown 0.812 -0.307
4 264958_at AT1G76960 unknown 0.756 -0.727
5 253832_at AT4G27654 unknown 0.730 -1.506
6 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.711 -0.520
7 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.696 -0.904
8 259375_at AT3G16370 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.692 0.420
9 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.689 0.813
10 259479_at AT1G19020 unknown 0.655 0.490
11 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.652 -0.070
12 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 0.629 1.281
13 258606_at AT3G02840 [ARM repeat superfamily protein] 0.625 -0.781
14 253643_at AT4G29780 unknown 0.622 0.180
15 262211_at AT1G74930 ORA47 0.606 -0.480
16 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform 0.603 0.191
17 248322_at AT5G52760 [Copper transport protein family] 0.596 -1.124
18 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.586 -0.540
19 266800_at AT2G22880 [VQ motif-containing protein] 0.569 0.365
20 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.566 0.442
21 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.559 -0.074
22 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.558 -0.007
23 259879_at AT1G76650 CML38, calmodulin-like 38 0.544 0.043
24 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 0.541 -0.183
25 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.526 0.172
26 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.503 0.036
27 250942_at AT5G03350 [Legume lectin family protein] 0.502 -0.419
28 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.502 -0.506
29 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.498 -0.984
30 265611_at AT2G25510 unknown 0.488 -1.137
31 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] 0.482 0.091
32 254251_at AT4G23300 CRK22, cysteine-rich RLK (RECEPTOR-like protein kinase) 22 0.480 -1.206
33 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.479 0.504
34 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.477 -0.872
35 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 0.472 1.057
36 257925_at AT3G23170 unknown 0.472 1.028
37 262304_at AT1G70890 MLP43, MLP-like protein 43 0.470 -1.014
38 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 0.457 0.640
39 262612_at AT1G14150 PnsL2, Photosynthetic NDH subcomplex L 2, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 0.455 0.207
40 250261_at AT5G13400 [Major facilitator superfamily protein] 0.452 0.208
41 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.449 -0.444
42 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 0.446 1.212
43 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.444 -1.101
44 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.438 -0.596
45 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.437 0.466
46 262072_at AT1G59590 ZCF37 0.432 0.303
47 248822_at AT5G47000 [Peroxidase superfamily protein] 0.427 -0.643
48 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.422 1.130
49 252950_at AT4G38690 [PLC-like phosphodiesterases superfamily protein] 0.422 0.245
50 258792_at AT3G04640 [glycine-rich protein] 0.417 0.601
51 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 0.410 0.858
52 252115_at AT3G51600 LTP5, lipid transfer protein 5 0.406 0.612
53 262682_at AT1G75900 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.403 -1.228
54 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.402 0.752
55 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.394 0.061
56 264788_at AT2G17880 DJC24, DNA J protein C24 0.392 -0.541
57 246018_at AT5G10695 unknown 0.386 -0.417
58 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.385 -0.201
59 260862_at AT1G43850 SEU, seuss -0.259 0.522
60 255782_at AT1G19850 ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24, MP, MONOPTEROS -0.250 -0.421
61 258946_at AT3G10650 AtNUP1, NUP1 -0.244 0.878
62 263996_at AT2G22530 [Alkaline-phosphatase-like family protein] -0.234 -0.843
63 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 -0.225 0.136
64 246284_at AT4G36780 BEH2, BES1/BZR1 homolog 2 -0.225 0.173
65 253524_at AT4G31430 unknown -0.219 0.935
66 265256_at AT2G28390 [SAND family protein] -0.215 0.727
67 247184_at AT5G65450 UBP17, ubiquitin-specific protease 17 -0.214 0.213
68 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] -0.213 -0.364
69 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.210 0.307
70 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.205 0.190
71 251145_at AT3G63500 TTA2, TITANIA 2 -0.205 0.765
72 264491_at AT1G27410 [DNA repair metallo-beta-lactamase family protein] -0.203 -0.092
73 262292_at AT1G27595 unknown -0.202 -0.164
74 250310_at AT5G12230 MED19A -0.199 0.715
75 248142_at AT5G55040 [DNA-binding bromodomain-containing protein] -0.198 0.005
76 258684_at AT3G08680 [Leucine-rich repeat protein kinase family protein] -0.194 0.232
77 251148_at AT3G63180 ATTKL, TICKLE, TKL, TIC-like -0.193 -0.355
78 248301_at AT5G53150 [DNAJ heat shock N-terminal domain-containing protein] -0.190 0.013
79 260641_at AT1G53200 unknown -0.189 -0.145
80 251688_at AT3G56480 [myosin heavy chain-related] -0.188 -0.741
81 256982_at AT3G13460 ECT2, evolutionarily conserved C-terminal region 2 -0.188 0.352
82 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.188 -0.184
83 246614_at AT5G35410 ATSOS2, SALT OVERLY SENSITIVE 2, CIPK24, CBL-INTERACTING PROTEIN KINASE 24, SNRK3.11, SNF1-RELATED PROTEIN KINASE 3.11, SOS2, SALT OVERLY SENSITIVE 2 -0.187 -0.804
84 267465_at AT2G19170 SLP3, subtilisin-like serine protease 3 -0.187 0.256
85 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.186 -0.969
86 256413_at AT3G11100 [sequence-specific DNA binding transcription factors] -0.184 -0.496
87 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 -0.184 -0.045
88 253560_at AT4G31160 DCAF1, DDB1-CUL4 associated factor 1 -0.181 -0.071
89 247465_at AT5G62190 PRH75 -0.180 0.738
90 259731_at AT1G77460 CSI3, CELLULOSE SYNTHASE INTERACTIVE 3 -0.180 -0.457
91 256821_at AT3G22180 [DHHC-type zinc finger family protein] -0.180 -0.659
92 260787_at AT1G06230 GTE4, global transcription factor group E4 -0.178 0.260
93 251467_at AT3G59470 [Far-red impaired responsive (FAR1) family protein] -0.176 0.198
94 256140_at AT1G48650 [DEA(D/H)-box RNA helicase family protein] -0.176 0.696
95 248452_at AT5G51300 [splicing factor-related] -0.175 0.825
96 254860_at AT4G12110 ATSMO1-1, SMO1-1, sterol-4alpha-methyl oxidase 1-1 -0.175 0.017
97 248150_at AT5G54670 ATK3, kinesin 3, KATC, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C -0.175 -0.140
98 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.173 -0.280
99 259680_at AT1G77690 LAX3, like AUX1 3 -0.172 0.283
100 248883_at AT5G46190 [RNA-binding KH domain-containing protein] -0.171 0.650
101 247153_at AT5G65700 BAM1, BARELY ANY MERISTEM 1 -0.171 0.917
102 252113_at AT3G51620 [PAP/OAS1 substrate-binding domain superfamily] -0.170 0.272
103 246802_at AT5G27000 ATK4, kinesin 4, KATD, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D -0.169 -0.513
104 258264_at AT3G15790 ATMBD11, MBD11, methyl-CPG-binding domain 11 -0.169 -0.322
105 247044_at AT5G66850 MAPKKK5, mitogen-activated protein kinase kinase kinase 5 -0.165 -0.135
106 267534_at AT2G41900 OXS2, OXIDATIVE STRESS 2, TZF7, tandem zinc finger protein 7 -0.165 0.966
107 255947_at AT1G22040 [Galactose oxidase/kelch repeat superfamily protein] -0.164 -0.304
108 255559_at AT4G02010 [Protein kinase superfamily protein] -0.164 0.636
109 245415_at AT4G17330 ATG2484-1, G2484-1 protein, G2484-1, G2484-1 protein -0.164 -0.087
110 247057_at AT5G66770 [GRAS family transcription factor] -0.164 -0.335
111 245120_at AT2G39810 ESD6, EARLY IN SHORT DAYS 6, HOS1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 -0.163 0.075
112 250820_at AT5G05160 RUL1, REDUCED IN LATERAL GROWTH1 -0.161 -0.351
113 253446_at AT4G32620 [Enhancer of polycomb-like transcription factor protein] -0.161 0.007
114 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.161 -0.345
115 262923_at AT1G75660 AtXRN3, 5'-3' EXORIBONUCLEASE 3, XRN3, 5'-3' exoribonuclease 3 -0.159 0.138