4.0:Information of module
vtc2 mature somatic embryo
In comparison with Col-0 2HS help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010243 response to organonitrogen compound BP 1.007e-20
GO:0010200 response to chitin BP 1.201e-20
GO:1901700 response to oxygen-containing compound BP 7.343e-19
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009888 tissue development BP 4.885e-11
GO:0048507 meristem development BP 1.344e-09
GO:0048731 system development BP 1.512e-09
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
vtc2 mature somatic embryo		 Log2 signal ratio
Col-0 2HS
1 247252_at AT5G64770 CLEL 9, CLE-like 9, GLV2, GOLVEN 2, RGF9, root meristem growth factor 9 1.080 -0.022
2 256497_at AT1G31580 CXC750, ECS1 0.980 0.041
3 250098_at AT5G17350 unknown 0.812 0.298
4 264958_at AT1G76960 unknown 0.756 0.033
5 253832_at AT4G27654 unknown 0.730 0.181
6 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.711 1.005
7 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] 0.696 0.002
8 259375_at AT3G16370 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.692 -0.054
9 253628_at AT4G30280 ATXTH18, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 18, XTH18, xyloglucan endotransglucosylase/hydrolase 18 0.689 0.307
10 259479_at AT1G19020 unknown 0.655 0.325
11 259786_at AT1G29660 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.652 -0.059
12 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 0.629 -0.070
13 258606_at AT3G02840 [ARM repeat superfamily protein] 0.625 0.322
14 253643_at AT4G29780 unknown 0.622 0.541
15 262211_at AT1G74930 ORA47 0.606 0.306
16 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform 0.603 -0.003
17 248322_at AT5G52760 [Copper transport protein family] 0.596 0.647
18 251221_at AT3G62550 [Adenine nucleotide alpha hydrolases-like superfamily protein] 0.586 -0.024
19 266800_at AT2G22880 [VQ motif-containing protein] 0.569 0.873
20 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.566 0.314
21 265075_at AT1G55450 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.559 0.124
22 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.558 0.308
23 259879_at AT1G76650 CML38, calmodulin-like 38 0.544 1.287
24 258239_at AT3G27690 LHCB2, LIGHT-HARVESTING CHLOROPHYLL B-BINDING 2, LHCB2.3, photosystem II light harvesting complex gene 2.3, LHCB2.4 0.541 0.131
25 247655_at AT5G59820 AtZAT12, RHL41, RESPONSIVE TO HIGH LIGHT 41, ZAT12 0.526 0.773
26 266320_at AT2G46640 TAC1, Tiller Angle Control 1 0.503 0.079
27 250942_at AT5G03350 [Legume lectin family protein] 0.502 0.238
28 245777_at AT1G73540 atnudt21, nudix hydrolase homolog 21, NUDT21, nudix hydrolase homolog 21 0.502 -0.094
29 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.498 0.213
30 265611_at AT2G25510 unknown 0.488 0.011
31 254041_at AT4G25830 [Uncharacterised protein family (UPF0497)] 0.482 0.006
32 254251_at AT4G23300 CRK22, cysteine-rich RLK (RECEPTOR-like protein kinase) 22 0.480 -0.120
33 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.479 0.699
34 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.477 0.182
35 257203_at AT3G23730 XTH16, xyloglucan endotransglucosylase/hydrolase 16 0.472 -0.156
36 257925_at AT3G23170 unknown 0.472 0.980
37 262304_at AT1G70890 MLP43, MLP-like protein 43 0.470 -0.001
38 259839_at AT1G52190 AtNPF1.2, NPF1.2, NRT1/ PTR family 1.2, NRT1.11, nitrate transporter 1.11 0.457 -0.118
39 262612_at AT1G14150 PnsL2, Photosynthetic NDH subcomplex L 2, PQL1, PsbQ-like 1, PQL2, PsbQ-like 2 0.455 0.044
40 250261_at AT5G13400 [Major facilitator superfamily protein] 0.452 -0.124
41 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 0.449 0.191
42 254122_at AT4G24510 CER2, ECERIFERUM 2, VC-2, VC2 0.446 -0.096
43 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.444 0.413
44 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.438 0.737
45 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.437 0.672
46 262072_at AT1G59590 ZCF37 0.432 0.383
47 248822_at AT5G47000 [Peroxidase superfamily protein] 0.427 -0.054
48 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.422 0.720
49 252950_at AT4G38690 [PLC-like phosphodiesterases superfamily protein] 0.422 -0.033
50 258792_at AT3G04640 [glycine-rich protein] 0.417 0.521
51 261949_at AT1G64670 BDG1, BODYGUARD1, CED1, 9-CIS EPOXYCAROTENOID DIOXYGENASE DEFECTIVE 1 0.410 -0.074
52 252115_at AT3G51600 LTP5, lipid transfer protein 5 0.406 -0.043
53 262682_at AT1G75900 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.403 -0.059
54 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.402 0.355
55 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.394 0.349
56 264788_at AT2G17880 DJC24, DNA J protein C24 0.392 0.289
57 246018_at AT5G10695 unknown 0.386 0.411
58 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.385 0.081
59 260862_at AT1G43850 SEU, seuss -0.259 -0.152
60 255782_at AT1G19850 ARF5, AUXIN RESPONSE FACTOR 5, IAA24, indole-3-acetic acid inducible 24, MP, MONOPTEROS -0.250 -0.125
61 258946_at AT3G10650 AtNUP1, NUP1 -0.244 -0.109
62 263996_at AT2G22530 [Alkaline-phosphatase-like family protein] -0.234 -0.090
63 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 -0.225 -0.013
64 246284_at AT4G36780 BEH2, BES1/BZR1 homolog 2 -0.225 0.041
65 253524_at AT4G31430 unknown -0.219 -0.025
66 265256_at AT2G28390 [SAND family protein] -0.215 -0.068
67 247184_at AT5G65450 UBP17, ubiquitin-specific protease 17 -0.214 -0.161
68 250164_at AT5G15280 [Pentatricopeptide repeat (PPR) superfamily protein] -0.213 -0.215
69 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.210 -0.162
70 246562_at AT5G15580 LNG1, LONGIFOLIA1, TRM2, TON1 Recruiting Motif 2 -0.205 -0.173
71 251145_at AT3G63500 TTA2, TITANIA 2 -0.205 -0.081
72 264491_at AT1G27410 [DNA repair metallo-beta-lactamase family protein] -0.203 0.027
73 262292_at AT1G27595 unknown -0.202 -0.207
74 250310_at AT5G12230 MED19A -0.199 -0.014
75 248142_at AT5G55040 [DNA-binding bromodomain-containing protein] -0.198 -0.107
76 258684_at AT3G08680 [Leucine-rich repeat protein kinase family protein] -0.194 -0.093
77 251148_at AT3G63180 ATTKL, TICKLE, TKL, TIC-like -0.193 -0.113
78 248301_at AT5G53150 [DNAJ heat shock N-terminal domain-containing protein] -0.190 0.023
79 260641_at AT1G53200 unknown -0.189 0.058
80 251688_at AT3G56480 [myosin heavy chain-related] -0.188 -0.107
81 256982_at AT3G13460 ECT2, evolutionarily conserved C-terminal region 2 -0.188 -0.034
82 266715_at AT2G46780 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.188 -0.122
83 246614_at AT5G35410 ATSOS2, SALT OVERLY SENSITIVE 2, CIPK24, CBL-INTERACTING PROTEIN KINASE 24, SNRK3.11, SNF1-RELATED PROTEIN KINASE 3.11, SOS2, SALT OVERLY SENSITIVE 2 -0.187 -0.021
84 267465_at AT2G19170 SLP3, subtilisin-like serine protease 3 -0.187 -0.128
85 260693_at AT1G32450 AtNPF7.3, NPF7.3, NRT1/ PTR family 7.3, NRT1.5, nitrate transporter 1.5 -0.186 -0.146
86 256413_at AT3G11100 [sequence-specific DNA binding transcription factors] -0.184 -0.024
87 258033_at AT3G21250 ABCC8, ATP-binding cassette C8, ATMRP6, ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, MRP6, multidrug resistance-associated protein 6 -0.184 -0.086
88 253560_at AT4G31160 DCAF1, DDB1-CUL4 associated factor 1 -0.181 -0.059
89 247465_at AT5G62190 PRH75 -0.180 -0.019
90 259731_at AT1G77460 CSI3, CELLULOSE SYNTHASE INTERACTIVE 3 -0.180 -0.150
91 256821_at AT3G22180 [DHHC-type zinc finger family protein] -0.180 0.005
92 260787_at AT1G06230 GTE4, global transcription factor group E4 -0.178 -0.082
93 251467_at AT3G59470 [Far-red impaired responsive (FAR1) family protein] -0.176 -0.013
94 256140_at AT1G48650 [DEA(D/H)-box RNA helicase family protein] -0.176 -0.158
95 248452_at AT5G51300 [splicing factor-related] -0.175 -0.072
96 254860_at AT4G12110 ATSMO1-1, SMO1-1, sterol-4alpha-methyl oxidase 1-1 -0.175 -0.061
97 248150_at AT5G54670 ATK3, kinesin 3, KATC, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA C -0.175 -0.062
98 250426_at AT5G10510 AIL6, AINTEGUMENTA-like 6, PLT3, PLETHORA 3 -0.173 -0.001
99 259680_at AT1G77690 LAX3, like AUX1 3 -0.172 -0.184
100 248883_at AT5G46190 [RNA-binding KH domain-containing protein] -0.171 -0.080
101 247153_at AT5G65700 BAM1, BARELY ANY MERISTEM 1 -0.171 -0.065
102 252113_at AT3G51620 [PAP/OAS1 substrate-binding domain superfamily] -0.170 -0.020
103 246802_at AT5G27000 ATK4, kinesin 4, KATD, KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D -0.169 -0.059
104 258264_at AT3G15790 ATMBD11, MBD11, methyl-CPG-binding domain 11 -0.169 0.006
105 247044_at AT5G66850 MAPKKK5, mitogen-activated protein kinase kinase kinase 5 -0.165 0.032
106 267534_at AT2G41900 OXS2, OXIDATIVE STRESS 2, TZF7, tandem zinc finger protein 7 -0.165 -0.192
107 255947_at AT1G22040 [Galactose oxidase/kelch repeat superfamily protein] -0.164 -0.006
108 255559_at AT4G02010 [Protein kinase superfamily protein] -0.164 0.003
109 245415_at AT4G17330 ATG2484-1, G2484-1 protein, G2484-1, G2484-1 protein -0.164 -0.043
110 247057_at AT5G66770 [GRAS family transcription factor] -0.164 -0.120
111 245120_at AT2G39810 ESD6, EARLY IN SHORT DAYS 6, HOS1, HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 1 -0.163 -0.037
112 250820_at AT5G05160 RUL1, REDUCED IN LATERAL GROWTH1 -0.161 -0.397
113 253446_at AT4G32620 [Enhancer of polycomb-like transcription factor protein] -0.161 -0.182
114 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.161 0.028
115 262923_at AT1G75660 AtXRN3, 5'-3' EXORIBONUCLEASE 3, XRN3, 5'-3' exoribonuclease 3 -0.159 -0.044