4.0:Information of module
vtc2 day 14 induction
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0065007 biological regulation BP 2.670e-08
GO:0042446 hormone biosynthetic process BP 1.257e-07
GO:0042445 hormone metabolic process BP 2.636e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.046e-07
GO:0001101 response to acid chemical BP 1.733e-07
GO:0042221 response to chemical BP 4.281e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
vtc2 day 14 induction		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 267431_at AT2G34870 MEE26, maternal effect embryo arrest 26 0.487 0.678
2 253241_at AT4G34520 FAE1, FATTY ACID ELONGATION1, KCS18, 3-ketoacyl-CoA synthase 18 0.408 -0.409
3 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 0.385 -0.162
4 255111_at AT4G08780 [Peroxidase superfamily protein] 0.338 -0.928
5 248431_at AT5G51470 [Auxin-responsive GH3 family protein] 0.328 -1.870
6 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.324 -0.090
7 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.317 0.513
8 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.300 -0.928
9 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 0.299 -0.300
10 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.293 -1.066
11 250467_at AT5G10100 TPPI, trehalose-6-phosphate phosphatase I 0.291 -0.898
12 254264_at AT4G23510 [Disease resistance protein (TIR-NBS-LRR class) family] 0.288 -0.218
13 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.288 0.073
14 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.287 0.419
15 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.279 0.042
16 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 0.274 0.386
17 253150_at AT4G35660 unknown 0.259 0.363
18 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] 0.251 -0.367
19 249206_at AT5G42630 ATS, ABERRANT TESTA SHAPE, KAN4, KANADI 4 0.239 -0.080
20 246072_at AT5G20240 PI, PISTILLATA 0.236 -0.844
21 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.231 -1.101
22 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] 0.228 -0.386
23 248647_at AT5G49190 ATSUS2, SSA, SUCROSE SYNTHASE FROM ARABIDOPSIS, SUS2, sucrose synthase 2 0.228 -0.481
24 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.223 0.504
25 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.222 -0.311
26 263042_at AT1G23340 unknown 0.221 -0.333
27 264721_at AT1G23000 [Heavy metal transport/detoxification superfamily protein ] 0.212 0.511
28 248754_at AT5G47670 L1L, LEC1-LIKE, NF-YB6, nuclear factor Y, subunit B6 0.209 0.115
29 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.193 -0.247
30 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.192 0.331
31 260542_at AT2G43560 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.187 0.513
32 260639_at AT1G53180 unknown 0.185 0.853
33 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 0.185 -0.509
34 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 0.184 0.575
35 245075_at AT2G23180 CYP96A1, cytochrome P450, family 96, subfamily A, polypeptide 1 0.182 -0.313
36 257229_at AT3G16490 IQD26, IQ-domain 26 0.180 0.281
37 262278_at AT1G68640 PAN, PERIANTHIA, TGA8, TGACG sequence-specific binding protein 8 0.180 0.551
38 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 0.176 -0.465
39 253227_at AT4G35030 [Protein kinase superfamily protein] 0.169 -1.280
40 254790_at AT4G12800 PSAL, photosystem I subunit l 0.164 0.397
41 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.162 -0.842
42 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 0.159 0.231
43 263352_at AT2G22080 unknown 0.158 -0.268
44 245161_at AT2G33070 ATNSP2, NITRILE-SPECIFIER PROTEIN 2, NSP2, nitrile specifier protein 2 0.157 0.252
45 257285_at AT3G29760 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.154 0.675
46 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.154 0.134
47 249716_at AT5G35770 SAP, STERILE APETALA 0.153 -0.267
48 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.152 0.336
49 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] 0.151 -0.121
50 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.151 0.290
51 251081_at AT5G02070 [Protein kinase family protein] 0.144 -0.080
52 263653_at AT1G04310 ERS2, ethylene response sensor 2 0.144 -0.017
53 246125_at AT5G19875 unknown 0.143 -0.673
54 256212_at AT1G50970 [Membrane trafficking VPS53 family protein] 0.142 -0.092
55 261260_at AT1G26680 [transcriptional factor B3 family protein] 0.141 -0.259
56 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.137 0.052
57 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.134 0.225
58 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.133 0.096
59 259379_at AT3G16350 [Homeodomain-like superfamily protein] 0.132 0.634
60 253922_at AT4G26850 VTC2, vitamin c defective 2 -0.934 0.836
61 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 -0.344 -0.366
62 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.343 -0.791
63 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 -0.331 0.777
64 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.329 -0.972
65 245233_at AT4G25580 [CAP160 protein] -0.319 -0.216
66 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.294 -0.274
67 249848_at AT5G23220 NIC3, nicotinamidase 3 -0.288 -0.266
68 254818_at AT4G12470 AZI1, azelaic acid induced 1 -0.287 -0.794
69 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -0.276 1.281
70 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.273 -0.448
71 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.267 -0.546
72 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 -0.262 -0.701
73 253936_at AT4G26880 [Stigma-specific Stig1 family protein] -0.254 -1.624
74 250826_at AT5G05220 unknown -0.252 0.042
75 249847_at AT5G23210 SCPL34, serine carboxypeptidase-like 34 -0.248 0.082
76 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.239 -0.657
77 266393_at AT2G41260 ATM17, M17 -0.236 -0.905
78 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 -0.231 -1.315
79 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 -0.223 -0.391
80 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.220 -0.271
81 256358_at AT1G66470 AtRHD6, RHD6, ROOT HAIR DEFECTIVE6 -0.216 0.588
82 266611_at AT2G14960 GH3.1 -0.215 -0.688
83 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.212 0.587
84 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 -0.206 -0.644
85 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] -0.198 -0.357
86 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 -0.196 -0.338
87 258596_at AT3G04510 LSH2, LIGHT SENSITIVE HYPOCOTYLS 2 -0.195 0.062
88 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 -0.191 0.136
89 248428_at AT5G51760 AHG1, ABA-hypersensitive germination 1 -0.191 0.201
90 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.190 -0.273
91 257059_at AT3G15280 unknown -0.190 0.575
92 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.189 0.321
93 252914_at AT4G39130 [Dehydrin family protein] -0.187 -0.569
94 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.186 -0.384
95 249111_at AT5G43770 [proline-rich family protein] -0.185 -0.094
96 255596_at AT4G01720 AtWRKY47, WRKY47 -0.181 0.492
97 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 -0.181 -0.244
98 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.180 0.502
99 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] -0.177 -0.907
100 248759_at AT5G47610 [RING/U-box superfamily protein] -0.176 -0.174
101 247645_at AT5G60530 [late embryogenesis abundant protein-related / LEA protein-related] -0.176 0.164
102 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.175 1.264
103 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.172 0.442
104 264480_at AT1G77300 ASHH2, ASH1 HOMOLOG 2, CCR1, CAROTENOID CHLOROPLAST REGULATORY1, EFS, EARLY FLOWERING IN SHORT DAYS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 -0.172 -0.536
105 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.170 -0.291
106 248961_at AT5G45650 [subtilase family protein] -0.167 1.163
107 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.166 -0.231
108 266941_at AT2G18980 [Peroxidase superfamily protein] -0.165 1.535
109 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.164 0.559
110 254474_at AT4G20390 [Uncharacterised protein family (UPF0497)] -0.163 0.067
111 262049_at AT1G80180 unknown -0.161 -0.183
112 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 -0.159 -0.560
113 250622_at AT5G07310 [Integrase-type DNA-binding superfamily protein] -0.157 -0.957
114 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.156 0.459
115 266170_at AT2G39050 ArathEULS3, EULS3, Euonymus lectin S3 -0.156 0.567
116 263866_at AT2G36950 [Heavy metal transport/detoxification superfamily protein ] -0.155 0.779
117 247359_at AT5G63560 FACT, FATTY ALCOHOL:CAFFEOYL-CoA CAFFEOYL TRANSFERASE -0.153 -1.101