4.0:Information of module
vtc2 day 14 induction
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0065007 biological regulation BP 2.670e-08
GO:0042446 hormone biosynthetic process BP 1.257e-07
GO:0042445 hormone metabolic process BP 2.636e-07
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 1.046e-07
GO:0001101 response to acid chemical BP 1.733e-07
GO:0042221 response to chemical BP 4.281e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
vtc2 day 14 induction		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 267431_at AT2G34870 MEE26, maternal effect embryo arrest 26 0.487 0.046
2 253241_at AT4G34520 FAE1, FATTY ACID ELONGATION1, KCS18, 3-ketoacyl-CoA synthase 18 0.408 -0.234
3 247337_at AT5G63660 LCR74, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 74, PDF2.5 0.385 0.035
4 255111_at AT4G08780 [Peroxidase superfamily protein] 0.338 -0.070
5 248431_at AT5G51470 [Auxin-responsive GH3 family protein] 0.328 -0.032
6 250413_at AT5G11160 APT5, adenine phosphoribosyltransferase 5 0.324 -0.105
7 260745_at AT1G78370 ATGSTU20, glutathione S-transferase TAU 20, GSTU20, glutathione S-transferase TAU 20 0.317 -0.073
8 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.300 -0.178
9 259383_at AT3G16470 JAL35, jacalin-related lectin 35, JR1, JASMONATE RESPONSIVE 1 0.299 -0.156
10 251705_at AT3G56400 ATWRKY70, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 70, WRKY70, WRKY DNA-binding protein 70 0.293 -0.005
11 250467_at AT5G10100 TPPI, trehalose-6-phosphate phosphatase I 0.291 -0.031
12 254264_at AT4G23510 [Disease resistance protein (TIR-NBS-LRR class) family] 0.288 0.045
13 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 0.288 -0.026
14 257373_at AT2G43140 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.287 -0.143
15 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.279 0.068
16 260957_at AT1G06080 ADS1, delta 9 desaturase 1, AtADS1 0.274 -0.004
17 253150_at AT4G35660 unknown 0.259 0.131
18 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] 0.251 0.016
19 249206_at AT5G42630 ATS, ABERRANT TESTA SHAPE, KAN4, KANADI 4 0.239 0.091
20 246072_at AT5G20240 PI, PISTILLATA 0.236 -0.072
21 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.231 0.082
22 258760_at AT3G10780 [emp24/gp25L/p24 family/GOLD family protein] 0.228 -0.078
23 248647_at AT5G49190 ATSUS2, SSA, SUCROSE SYNTHASE FROM ARABIDOPSIS, SUS2, sucrose synthase 2 0.228 -0.105
24 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 0.223 0.071
25 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.222 -0.003
26 263042_at AT1G23340 unknown 0.221 -0.049
27 264721_at AT1G23000 [Heavy metal transport/detoxification superfamily protein ] 0.212 0.061
28 248754_at AT5G47670 L1L, LEC1-LIKE, NF-YB6, nuclear factor Y, subunit B6 0.209 0.022
29 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 0.193 0.058
30 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.192 -0.160
31 260542_at AT2G43560 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] 0.187 0.079
32 260639_at AT1G53180 unknown 0.185 0.019
33 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 0.185 0.007
34 262526_at AT1G17050 AtSPS2, SPS2, solanesyl diphosphate synthase 2 0.184 0.046
35 245075_at AT2G23180 CYP96A1, cytochrome P450, family 96, subfamily A, polypeptide 1 0.182 0.002
36 257229_at AT3G16490 IQD26, IQ-domain 26 0.180 0.120
37 262278_at AT1G68640 PAN, PERIANTHIA, TGA8, TGACG sequence-specific binding protein 8 0.180 0.067
38 263386_at AT2G40150 TBL28, TRICHOME BIREFRINGENCE-LIKE 28 0.176 0.231
39 253227_at AT4G35030 [Protein kinase superfamily protein] 0.169 0.029
40 254790_at AT4G12800 PSAL, photosystem I subunit l 0.164 -0.253
41 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 0.162 0.194
42 264124_at AT1G79360 ATOCT2, organic cation/carnitine transporter 2, OCT2, ORGANIC CATION TRANSPORTER 2, OCT2, organic cation/carnitine transporter 2 0.159 0.002
43 263352_at AT2G22080 unknown 0.158 0.081
44 245161_at AT2G33070 ATNSP2, NITRILE-SPECIFIER PROTEIN 2, NSP2, nitrile specifier protein 2 0.157 -0.007
45 257285_at AT3G29760 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.154 -0.038
46 258287_at AT3G15990 SULTR3;4, sulfate transporter 3;4 0.154 0.083
47 249716_at AT5G35770 SAP, STERILE APETALA 0.153 0.018
48 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.152 0.053
49 253684_at AT4G29690 [Alkaline-phosphatase-like family protein] 0.151 0.023
50 264517_at AT1G10120 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.151 -0.168
51 251081_at AT5G02070 [Protein kinase family protein] 0.144 0.039
52 263653_at AT1G04310 ERS2, ethylene response sensor 2 0.144 0.016
53 246125_at AT5G19875 unknown 0.143 0.068
54 256212_at AT1G50970 [Membrane trafficking VPS53 family protein] 0.142 -0.046
55 261260_at AT1G26680 [transcriptional factor B3 family protein] 0.141 0.053
56 252248_at AT3G49750 AtRLP44, receptor like protein 44, RLP44, receptor like protein 44 0.137 0.009
57 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 0.134 0.037
58 257698_at AT3G12730 [Homeodomain-like superfamily protein] 0.133 0.105
59 259379_at AT3G16350 [Homeodomain-like superfamily protein] 0.132 -0.470
60 253922_at AT4G26850 VTC2, vitamin c defective 2 -0.934 0.195
61 255250_at AT4G05100 AtMYB74, myb domain protein 74, MYB74, myb domain protein 74 -0.344 0.096
62 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 -0.343 0.050
63 260410_at AT1G69870 AtNPF2.13, NPF2.13, NRT1/ PTR family 2.13, NRT1.7, nitrate transporter 1.7 -0.331 -0.022
64 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 -0.329 -0.109
65 245233_at AT4G25580 [CAP160 protein] -0.319 -0.216
66 250083_at AT5G17220 ATGSTF12, ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE PHI 12, GST26, GLUTATHIONE S-TRANSFERASE 26, GSTF12, glutathione S-transferase phi 12, TT19, TRANSPARENT TESTA 19 -0.294 -0.033
67 249848_at AT5G23220 NIC3, nicotinamidase 3 -0.288 -0.333
68 254818_at AT4G12470 AZI1, azelaic acid induced 1 -0.287 0.072
69 260221_at AT1G74670 GASA6, GA-stimulated Arabidopsis 6 -0.276 -0.050
70 267389_at AT2G44460 BGLU28, beta glucosidase 28 -0.273 -0.045
71 245627_at AT1G56600 AtGolS2, galactinol synthase 2, GolS2, galactinol synthase 2 -0.267 -0.088
72 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 -0.262 0.192
73 253936_at AT4G26880 [Stigma-specific Stig1 family protein] -0.254 0.016
74 250826_at AT5G05220 unknown -0.252 0.177
75 249847_at AT5G23210 SCPL34, serine carboxypeptidase-like 34 -0.248 0.228
76 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.239 -0.254
77 266393_at AT2G41260 ATM17, M17 -0.236 0.017
78 254189_at AT4G24000 ATCSLG2, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE G2, CSLG2, cellulose synthase like G2 -0.231 -0.005
79 247435_at AT5G62480 ATGSTU9, glutathione S-transferase tau 9, GST14, GLUTATHIONE S-TRANSFERASE 14, GST14B, GLUTATHIONE S-TRANSFERASE 14B, GSTU9, glutathione S-transferase tau 9 -0.223 0.409
80 263492_at AT2G42560 [late embryogenesis abundant domain-containing protein / LEA domain-containing protein] -0.220 -0.181
81 256358_at AT1G66470 AtRHD6, RHD6, ROOT HAIR DEFECTIVE6 -0.216 0.001
82 266611_at AT2G14960 GH3.1 -0.215 0.083
83 265211_at AT2G36640 ATECP63, embryonic cell protein 63, ECP63, embryonic cell protein 63 -0.212 -0.024
84 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 -0.206 -0.069
85 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] -0.198 0.037
86 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 -0.196 -0.042
87 258596_at AT3G04510 LSH2, LIGHT SENSITIVE HYPOCOTYLS 2 -0.195 0.079
88 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 -0.191 -0.139
89 248428_at AT5G51760 AHG1, ABA-hypersensitive germination 1 -0.191 -0.066
90 253293_at AT4G33905 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.190 0.059
91 257059_at AT3G15280 unknown -0.190 -0.059
92 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.189 0.032
93 252914_at AT4G39130 [Dehydrin family protein] -0.187 0.125
94 248352_at AT5G52300 LTI65, LOW-TEMPERATURE-INDUCED 65, RD29B, RESPONSIVE TO DESSICATION 29B -0.186 0.690
95 249111_at AT5G43770 [proline-rich family protein] -0.185 -0.080
96 255596_at AT4G01720 AtWRKY47, WRKY47 -0.181 0.059
97 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 -0.181 -0.023
98 249045_at AT5G44380 [FAD-binding Berberine family protein] -0.180 -0.044
99 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] -0.177 0.191
100 248759_at AT5G47610 [RING/U-box superfamily protein] -0.176 0.046
101 247645_at AT5G60530 [late embryogenesis abundant protein-related / LEA protein-related] -0.176 -0.179
102 245555_at AT4G15390 [HXXXD-type acyl-transferase family protein] -0.175 0.014
103 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] -0.172 0.086
104 264480_at AT1G77300 ASHH2, ASH1 HOMOLOG 2, CCR1, CAROTENOID CHLOROPLAST REGULATORY1, EFS, EARLY FLOWERING IN SHORT DAYS, LAZ2, LAZARUS 2, SDG8, SET DOMAIN GROUP 8 -0.172 -0.169
105 247126_at AT5G66080 APD9, Arabidopsis Pp2c clade D 9 -0.170 0.083
106 248961_at AT5G45650 [subtilase family protein] -0.167 -0.068
107 245624_at AT4G14090 [UDP-Glycosyltransferase superfamily protein] -0.166 -0.001
108 266941_at AT2G18980 [Peroxidase superfamily protein] -0.165 -0.264
109 266649_at AT2G25810 TIP4;1, tonoplast intrinsic protein 4;1 -0.164 -0.193
110 254474_at AT4G20390 [Uncharacterised protein family (UPF0497)] -0.163 -0.041
111 262049_at AT1G80180 unknown -0.161 -0.125
112 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 -0.159 -0.069
113 250622_at AT5G07310 [Integrase-type DNA-binding superfamily protein] -0.157 -0.006
114 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.156 0.146
115 266170_at AT2G39050 ArathEULS3, EULS3, Euonymus lectin S3 -0.156 -0.006
116 263866_at AT2G36950 [Heavy metal transport/detoxification superfamily protein ] -0.155 0.151
117 247359_at AT5G63560 FACT, FATTY ALCOHOL:CAFFEOYL-CoA CAFFEOYL TRANSFERASE -0.153 0.007