4.0:Information of module
Cs root
In comparison with Whole root - low pH 48H help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0046271 phenylpropanoid catabolic process BP 1.825e-03
GO:0046274 lignin catabolic process BP 1.825e-03
GO:0009808 lignin metabolic process BP 5.689e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010876 lipid localization BP 3.062e-05
GO:0051235 maintenance of location BP 3.088e-05
GO:0006396 RNA processing BP 6.910e-05
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Cs root		 Log2 signal ratio
Whole root - low pH 48H
1 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 0.346 0.038
2 255138_at AT4G08380 [Proline-rich extensin-like family protein] 0.309 0.050
3 253352_at AT4G33710 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.267 0.026
4 248921_at AT5G45950 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.229 0.006
5 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.192 0.068
6 263948_at AT2G35980 ATNHL10, ARABIDOPSIS NDR1/HIN1-LIKE 10, NHL10, NDR1/HIN1-LIKE, YLS9, YELLOW-LEAF-SPECIFIC GENE 9 0.179 -0.057
7 267096_at AT2G38180 [SGNH hydrolase-type esterase superfamily protein] 0.156 0.010
8 246374_at AT1G51840 [protein kinase-related] 0.140 0.041
9 255140_x_at AT4G08410 [Proline-rich extensin-like family protein] 0.128 0.114
10 267101_at AT2G41480 AtPRX25, PRX25, peroxidase 25 0.127 -0.029
11 266669_at AT2G29750 UGT71C1, UDP-glucosyl transferase 71C1 0.117 0.081
12 253243_at AT4G34560 unknown 0.113 -0.067
13 252006_at AT3G52820 ATPAP22, PURPLE ACID PHOSPHATASE 22, PAP22, purple acid phosphatase 22 0.113 -0.094
14 258422_at AT3G16710 [Pentatricopeptide repeat (PPR) superfamily protein] 0.111 0.021
15 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 0.109 -0.016
16 248577_at AT5G49870 [Mannose-binding lectin superfamily protein] 0.107 0.036
17 257922_at AT3G23150 ETR2, ethylene response 2 -0.199 0.036
18 254396_at AT4G21680 AtNPF7.2, NPF7.2, NRT1/ PTR family 7.2, NRT1.8, NITRATE TRANSPORTER 1.8 -0.173 0.071
19 248138_at AT5G54960 PDC2, pyruvate decarboxylase-2 -0.152 0.014
20 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.150 -0.085
21 250211_at AT5G13880 unknown -0.147 -0.047
22 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 -0.146 0.011
23 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.137 0.052
24 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.136 0.050
25 259485_at AT1G15700 ATPC2 -0.129 -0.002
26 260668_at AT1G19530 unknown -0.123 0.138
27 262586_at AT1G15480 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.121 -0.022
28 261320_at AT1G53120 [RNA-binding S4 domain-containing protein] -0.120 0.007
29 262104_at AT1G02910 LPA1, LOW PSII ACCUMULATION1 -0.114 0.030
30 254350_at AT4G22280 [F-box/RNI-like superfamily protein] -0.113 0.045
31 251193_at AT3G62910 APG3, ALBINO AND PALE GREEN, AtcpRF1, Arabidopsis thaliana chloroplast RF1, cpRF1, chloroplast ribosome release factor 1 -0.109 -0.014