4.0:Information of module
4C 7d
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 7.761e-25
GO:0009451 RNA modification BP 1.653e-20
GO:0006412 translation BP 1.515e-17
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 2.749e-19
GO:0006081 cellular aldehyde metabolic process BP 1.113e-14
GO:1901564 organonitrogen compound metabolic proces... BP 3.652e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
4C 7d		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 263497_at AT2G42540 COR15, COR15A, cold-regulated 15a 1.176 0.006
2 256779_at AT3G13784 AtcwINV5, cell wall invertase 5, CWINV5, cell wall invertase 5 1.109 0.002
3 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 1.088 0.002
4 266141_at AT2G02120 LCR70, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 70, PDF2.1 1.083 -0.134
5 262050_at AT1G80130 [Tetratricopeptide repeat (TPR)-like superfamily protein] 1.066 -0.130
6 251793_at AT3G55580 [Regulator of chromosome condensation (RCC1) family protein] 0.977 -0.079
7 251673_at AT3G57240 AtBG3, BG3, beta-1,3-glucanase 3 0.969 -0.134
8 256114_at AT1G16850 unknown 0.937 -0.102
9 266385_at AT2G14610 ATPR1, PATHOGENESIS-RELATED GENE 1, PR 1, PATHOGENESIS-RELATED GENE 1, PR1, pathogenesis-related gene 1 0.880 -0.073
10 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.811 0.033
11 259925_at AT1G75040 PR-5, PR5, pathogenesis-related gene 5 0.735 0.089
12 259550_at AT1G35230 AGP5, arabinogalactan protein 5 0.732 0.035
13 255524_at AT4G02330 AtPME41, ATPMEPCRB, PME41, pectin methylesterase 41 0.716 -0.075
14 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.712 0.015
15 249004_at AT5G44570 unknown 0.695 -0.085
16 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.648 -0.102
17 248236_at AT5G53870 AtENODL1, ENODL1, early nodulin-like protein 1 0.644 0.021
18 248467_at AT5G50800 AtSWEET13, SWEET13 0.632 0.054
19 264638_at AT1G65480 FT, FLOWERING LOCUS T, RSB8, REDUCED STEM BRANCHING 8 0.626 -0.032
20 254271_at AT4G23150 CRK7, cysteine-rich RLK (RECEPTOR-like protein kinase) 7 0.613 0.246
21 251229_at AT3G62740 BGLU7, beta glucosidase 7 0.606 -0.082
22 265119_at AT1G62570 FMO GS-OX4, flavin-monooxygenase glucosinolate S-oxygenase 4 0.592 0.109
23 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.569 0.018
24 260804_at AT1G78410 [VQ motif-containing protein] 0.539 -0.152
25 248197_at AT5G54190 PORA, protochlorophyllide oxidoreductase A 0.528 0.009
26 247474_at AT5G62280 unknown 0.523 0.102
27 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 0.515 0.079
28 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE 0.515 -0.123
29 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.514 -0.076
30 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN 0.504 0.183
31 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.493 -0.178
32 254818_at AT4G12470 AZI1, azelaic acid induced 1 0.491 0.072
33 246922_at AT5G25110 CIPK25, CBL-interacting protein kinase 25, SnRK3.25, SNF1-RELATED PROTEIN KINASE 3.25 0.491 -0.031
34 264261_at AT1G09240 ATNAS3, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 3, NAS3, nicotianamine synthase 3 0.471 -0.022
35 252639_at AT3G44550 FAR5, fatty acid reductase 5 0.442 0.058
36 252986_at AT4G38380 [MATE efflux family protein] 0.438 -0.012
37 247914_at AT5G57540 AtXTH13, XTH13, xyloglucan endotransglucosylase/hydrolase 13 0.435 0.210
38 249727_at AT5G35490 ATMRU1, ARABIDOPSIS MTO 1 RESPONDING UP 1, MRU1, MTO 1 RESPONDING UP 1 0.426 -0.265
39 251768_at AT3G55940 [Phosphoinositide-specific phospholipase C family protein] 0.423 0.004
40 253627_at AT4G30650 [Low temperature and salt responsive protein family] 0.423 -0.146
41 254243_at AT4G23210 CRK13, cysteine-rich RLK (RECEPTOR-like protein kinase) 13 0.422 -0.142
42 245807_at AT1G46768 RAP2.1, related to AP2 1 0.418 0.119
43 253848_at AT4G28020 unknown 0.415 0.015
44 248062_at AT5G55450 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.403 0.064
45 254231_at AT4G23810 ATWRKY53, WRKY53 0.401 0.017
46 256065_at AT1G07070 [Ribosomal protein L35Ae family protein] 0.399 -0.147
47 257382_at AT2G40750 ATWRKY54, WRKY DNA-BINDING PROTEIN 54, WRKY54, WRKY DNA-binding protein 54 0.389 0.039
48 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 0.385 -0.164
49 256911_at AT3G24090 GFAT, L-glutamine D-fructose-6-phosphate amidotransferase 0.372 0.019
50 265093_at AT1G03905 ABCI19, ATP-binding cassette I19 0.371 0.083
51 254079_at AT4G25730 [FtsJ-like methyltransferase family protein] 0.370 -0.010
52 261059_at AT1G01250 [Integrase-type DNA-binding superfamily protein] 0.370 -0.018
53 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 0.369 -0.011
54 258719_at AT3G09540 [Pectin lyase-like superfamily protein] 0.365 -0.083
55 251625_at AT3G57260 AtBG2, AtPR2, BG2, BETA-1,3-GLUCANASE 2, BGL2, beta-1,3-glucanase 2, PR-2, PATHOGENESIS-RELATED PROTEIN 2, PR2, PATHOGENESIS-RELATED PROTEIN 2 0.365 -0.234
56 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.364 -0.085
57 245879_at AT5G09420 AtmtOM64, ATTOC64-V, translocon at the outer membrane of chloroplasts 64-V, MTOM64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, OM64, outer membrane 64, TOC64-V, translocon at the outer membrane of chloroplasts 64-V 0.364 -0.276
58 254193_at AT4G23870 unknown 0.358 0.017
59 261318_at AT1G53035 unknown 0.356 0.019
60 254416_at AT4G21380 ARK3, receptor kinase 3, RK3, receptor kinase 3 0.340 0.045
61 261333_at AT1G44910 ATPRP40A, pre-mRNA-processing protein 40A, PRP40A, pre-mRNA-processing protein 40A 0.338 0.110
62 250601_at AT5G07810 [SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein] 0.337 -0.039
63 258009_at AT3G19440 [Pseudouridine synthase family protein] 0.333 0.063
64 263919_at AT2G36470 unknown 0.331 0.361
65 255479_at AT4G02380 AtLEA5, Arabidopsis thaliana late embryogenensis abundant like 5, SAG21, senescence-associated gene 21 0.331 -0.117
66 249258_at AT5G41650 [Lactoylglutathione lyase / glyoxalase I family protein] 0.330 0.023
67 246566_at AT5G14940 [Major facilitator superfamily protein] 0.328 0.146
68 250445_at AT5G10760 [Eukaryotic aspartyl protease family protein] 0.328 -0.097
69 245200_at AT1G67850 unknown 0.327 0.016
70 257188_at AT3G13150 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.327 0.011
71 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.325 -0.061
72 245427_at AT4G17550 AtG3Pp4, glycerol-3-phosphate permease 4, G3Pp4, glycerol-3-phosphate permease 4 0.325 0.023
73 260338_at AT1G69250 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] 0.322 0.256
74 262946_at AT1G79390 unknown 0.320 -0.099
75 245896_at AT5G09250 KIWI 0.320 0.028
76 263207_at AT1G10550 XET, XYLOGLUCAN:XYLOGLUCOSYL TRANSFERASE 33, XTH33, xyloglucan:xyloglucosyl transferase 33 0.319 -0.061
77 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.317 0.031
78 251735_at AT3G56090 ATFER3, ferritin 3, FER3, ferritin 3 0.316 0.178
79 251922_at AT3G54030 BSK6, brassinosteroid-signaling kinase 6 0.312 0.083
80 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.312 0.082
81 247497_at AT5G61770 PPAN, PETER PAN-like protein 0.310 0.037
82 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] 0.308 0.058
83 250142_at AT5G14650 [Pectin lyase-like superfamily protein] 0.304 0.058
84 262881_at AT1G64890 [Major facilitator superfamily protein] 0.304 -0.009
85 246249_at AT4G36680 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.302 -0.099
86 246939_at AT5G25390 SHN3, shine3 0.294 0.053
87 262521_at AT1G17130 unknown 0.292 0.266
88 253344_at AT4G33550 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.286 0.111
89 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.284 0.701
90 253585_at AT4G30720 PDE327, PIGMENT DEFECTIVE 327 0.283 -0.131
91 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -1.149 -0.248
92 249774_at AT5G24150 SQE5, SQUALENE MONOOXYGENASE 5, SQP1 -0.931 -0.053
93 249775_at AT5G24160 SQE6, squalene monoxygenase 6 -0.915 -0.023
94 256603_at AT3G28270 unknown -0.831 -0.496
95 246825_at AT5G26260 [TRAF-like family protein] -0.820 -0.024
96 254384_at AT4G21870 [HSP20-like chaperones superfamily protein] -0.815 0.028
97 248332_at AT5G52640 ATHS83, AtHsp90-1, HEAT SHOCK PROTEIN 90-1, ATHSP90.1, heat shock protein 90.1, HSP81-1, HEAT SHOCK PROTEIN 81-1, HSP81.1, HSP83, HEAT SHOCK PROTEIN 83, HSP90.1, heat shock protein 90.1 -0.700 -0.267
98 266988_at AT2G39310 JAL22, jacalin-related lectin 22 -0.690 -0.007
99 263668_at AT1G04350 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.681 -0.165
100 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -0.661 0.211
101 245399_at AT4G17340 DELTA-TIP2, TIP2;2, tonoplast intrinsic protein 2;2 -0.627 -0.020
102 250828_at AT5G05250 unknown -0.614 -0.076
103 245792_at AT1G32100 ATPRR1, PRR1, pinoresinol reductase 1 -0.607 -0.215
104 265051_at AT1G52100 [Mannose-binding lectin superfamily protein] -0.588 -0.025
105 263073_at AT2G17500 [Auxin efflux carrier family protein] -0.572 -0.096
106 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 -0.559 -0.053
107 256245_at AT3G12580 ATHSP70, ARABIDOPSIS HEAT SHOCK PROTEIN 70, HSP70, heat shock protein 70 -0.552 -0.018
108 251704_at AT3G56360 unknown -0.548 0.019
109 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 -0.545 0.021
110 253701_at AT4G29890 [choline monooxygenase, putative (CMO-like)] -0.544 0.123
111 246114_at AT5G20250 DIN10, DARK INDUCIBLE 10, RS6, raffinose synthase 6 -0.542 -0.003
112 247717_at AT5G59320 LTP3, lipid transfer protein 3 -0.537 -0.055
113 253496_at AT4G31870 ATGPX7, GLUTATHIONE PEROXIDASE 7, GPX7, glutathione peroxidase 7 -0.527 0.060
114 265511_at AT2G05540 [Glycine-rich protein family] -0.522 -0.139
115 263035_at AT1G23860 At-RSZ21, RS-containing zinc finger protein 21, RSZ21, RS-containing zinc finger protein 21, RSZP21, RS-containing zinc finger protein 21, SRZ-21, SRZ21 -0.516 0.047
116 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.488 0.017
117 263674_at AT2G04790 unknown -0.475 0.057
118 260592_at AT1G55850 ATCSLE1, CSLE1, cellulose synthase like E1 -0.469 0.053
119 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.468 -0.065
120 252365_at AT3G48350 CEP3, cysteine endopeptidase 3 -0.458 0.092
121 266984_at AT2G39570 ACR9, ACT domain repeats 9 -0.457 -0.090
122 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.457 0.086
123 247282_at AT5G64240 AtMC3, metacaspase 3, AtMCP1a, metacaspase 1a, MC3, metacaspase 3, MCP1a, metacaspase 1a -0.452 0.029
124 256441_at AT3G10940 LSF2, LIKE SEX4 2 -0.445 -0.047
125 246021_at AT5G21100 [Plant L-ascorbate oxidase] -0.437 -0.019
126 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.425 0.095
127 266279_at AT2G29290 [NAD(P)-binding Rossmann-fold superfamily protein] -0.424 -0.082
128 261016_at AT1G26560 BGLU40, beta glucosidase 40 -0.418 -0.018
129 264255_at AT1G09140 At-SR30, Serine/Arginine-Rich Protein Splicing Factor 30, ATSRP30, SERINE-ARGININE PROTEIN 30, ATSRP30.1, ATSRP30.2, SR30, Serine/Arginine-Rich Protein Splicing Factor 30 -0.417 0.013
130 246783_at AT5G27360 SFP2 -0.413 -0.004
131 263442_at AT2G28605 [Photosystem II reaction center PsbP family protein] -0.411 -0.046
132 258623_at AT3G02790 MBS1, METHYLENE BLUE SENSITIVITY 1 -0.411 -0.118
133 255626_at AT4G00780 [TRAF-like family protein] -0.411 0.154
134 250217_at AT5G14120 [Major facilitator superfamily protein] -0.410 0.129
135 249337_at AT5G41080 AtGDPD2, GDPD2, glycerophosphodiester phosphodiesterase 2 -0.405 0.058
136 257153_at AT3G27220 [Galactose oxidase/kelch repeat superfamily protein] -0.404 0.066
137 256454_at AT1G75280 [NmrA-like negative transcriptional regulator family protein] -0.403 -0.110
138 266005_at AT2G37340 AT-RS2Z33, arginine/serine-rich zinc knuckle-containing protein 33, ATRSZ33, ARGININE/SERINE-RICH ZINC KNUCKLE-CONTAINING PROTEIN 33, RS2Z33, arginine/serine-rich zinc knuckle-containing protein 33, RSZ33, arginine/serine-rich zinc knuckle-containing protein 33 -0.401 0.082
139 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 -0.401 -0.189
140 251886_at AT3G54260 TBL36, TRICHOME BIREFRINGENCE-LIKE 36 -0.399 -0.042
141 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.398 0.032
142 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.394 0.852
143 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 -0.392 -0.118
144 260872_at AT1G21350 [Thioredoxin superfamily protein] -0.390 0.095
145 259822_at AT1G66230 AtMYB20, myb domain protein 20, MYB20, myb domain protein 20 -0.385 0.033
146 266572_at AT2G23840 [HNH endonuclease] -0.384 0.018
147 249002_at AT5G44520 [NagB/RpiA/CoA transferase-like superfamily protein] -0.379 -0.159
148 265265_at AT2G42900 [Plant basic secretory protein (BSP) family protein] -0.379 0.236
149 257673_at AT3G20370 [TRAF-like family protein] -0.375 -0.158
150 262312_at AT1G70830 MLP28, MLP-like protein 28 -0.374 -0.540
151 247193_at AT5G65380 [MATE efflux family protein] -0.371 -0.025
152 255793_at AT2G33250 unknown -0.369 0.122
153 252154_at AT3G50880 [DNA glycosylase superfamily protein] -0.361 0.074
154 253243_at AT4G34560 unknown -0.358 -0.052
155 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.357 0.115
156 259685_at AT1G63090 AtPP2-A11, phloem protein 2-A11, PP2-A11, phloem protein 2-A11 -0.356 0.223
157 260481_at AT1G10960 ATFD1, ferredoxin 1, FD1, ferredoxin 1 -0.356 0.035
158 261151_at AT1G19650 [Sec14p-like phosphatidylinositol transfer family protein] -0.352 0.204
159 261751_at AT1G76080 ATCDSP32, ARABIDOPSIS THALIANA CHLOROPLASTIC DROUGHT-INDUCED STRESS PROTEIN OF 32 KD, CDSP32, chloroplastic drought-induced stress protein of 32 kD -0.348 0.154
160 250133_at AT5G16400 ATF2, TRXF2, thioredoxin F2 -0.348 -0.037
161 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.346 0.180
162 260317_at AT1G63800 UBC5, ubiquitin-conjugating enzyme 5 -0.345 -0.113
163 250180_at AT5G14450 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.339 0.129
164 252366_at AT3G48420 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.339 0.029
165 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.336 -0.073
166 256458_at AT1G75220 AtERDL6, ERDL6, ERD6-like 6 -0.334 0.080
167 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 -0.329 0.364
168 245524_at AT4G15920 AtSWEET17, SWEET17 -0.329 -0.097
169 264800_at AT1G08800 MyoB1, myosin binding protein 1 -0.328 -0.144
170 260477_at AT1G11050 [Protein kinase superfamily protein] -0.324 0.002
171 263032_at AT1G23850 unknown -0.322 -0.119
172 257789_at AT3G27020 AtYSL6, YSL6, YELLOW STRIPE like 6 -0.321 -0.040
173 253911_at AT4G27300 [S-locus lectin protein kinase family protein] -0.316 0.112
174 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] -0.316 0.049
175 254024_at AT4G25780 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.314 -0.186
176 250017_at AT5G18140 DJC69, DNA J protein A69 -0.312 0.213
177 247055_at AT5G66740 unknown -0.309 -0.092
178 246651_at AT5G35170 [adenylate kinase family protein] -0.309 -0.169
179 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.305 0.008