4.0:Information of module
4C 2h(SOIL)
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 1.908e-44
GO:0010243 response to organonitrogen compound BP 5.528e-44
GO:1901698 response to nitrogen compound BP 1.409e-35
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009832 plant-type cell wall biogenesis BP 7.197e-04
GO:0006914 autophagy BP 1.457e-03
GO:0010383 cell wall polysaccharide metabolic proce... BP 1.683e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
4C 2h(SOIL)		 Log2 signal ratio
root callus inducing medium 12 h
1 254074_at AT4G25490 ATCBF1, CBF1, C-repeat/DRE binding factor 1, DREB1B, DRE BINDING PROTEIN 1B 1.153 -0.696
2 254075_at AT4G25470 ATCBF2, CBF2, C-repeat/DRE binding factor 2, DREB1C, DRE/CRT-BINDING PROTEIN 1C, FTQ4, FREEZING TOLERANCE QTL 4 1.011 -0.606
3 245119_at AT2G41640 [Glycosyltransferase family 61 protein] 0.927 -0.388
4 245250_at AT4G17490 ATERF6, ethylene responsive element binding factor 6, ERF-6-6, ERF6, ethylene responsive element binding factor 6 0.876 -0.012
5 245757_at AT1G35140 EXL1, EXORDIUM like 1, PHI-1, PHOSPHATE-INDUCED 1 0.867 -0.636
6 261984_at AT1G33760 [Integrase-type DNA-binding superfamily protein] 0.802 -0.473
7 248964_at AT5G45340 CYP707A3, cytochrome P450, family 707, subfamily A, polypeptide 3 0.724 -0.378
8 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.704 -0.397
9 248799_at AT5G47230 ATERF-5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ATERF5, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 5, AtMACD1, ERF102, ERF5, ethylene responsive element binding factor 5 0.690 0.046
10 245711_at AT5G04340 C2H2, CZF2, COLD INDUCED ZINC FINGER PROTEIN 2, ZAT6, zinc finger of Arabidopsis thaliana 6 0.651 -0.263
11 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.578 -0.468
12 261470_at AT1G28370 ATERF11, ERF DOMAIN PROTEIN 11, ERF11, ERF domain protein 11 0.528 -0.347
13 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.500 -0.476
14 256017_at AT1G19180 AtJAZ1, JAZ1, jasmonate-zim-domain protein 1, TIFY10A 0.488 -0.258
15 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.390 -0.876
16 247240_at AT5G64660 ATCMPG2, CMPG2, CYS, MET, PRO, and GLY protein 2 0.386 -0.016
17 246495_at AT5G16200 [50S ribosomal protein-related] 0.380 0.092
18 252563_at AT3G45970 ATEXLA1, expansin-like A1, ATEXPL1, ATHEXP BETA 2.1, EXLA1, expansin-like A1, EXPL1, EXPANSIN L1 0.355 -0.511
19 256093_at AT1G20823 [RING/U-box superfamily protein] 0.345 -0.616
20 263379_at AT2G40140 ATSZF2, CZF1, SZF2, (SALT-INDUCIBLE ZINC FINGER 2, ZFAR1 0.331 -0.192
21 246108_at AT5G28630 [glycine-rich protein] 0.321 -0.783
22 260411_at AT1G69890 unknown 0.314 -0.459
23 252374_at AT3G48100 ARR5, response regulator 5, ATRR2, ARABIDOPSIS THALIANA RESPONSE REGULATOR 2, IBC6, INDUCED BY CYTOKININ 6, RR5, response regulator 5 0.307 -0.154
24 267069_at AT2G41010 ATCAMBP25, calmodulin (CAM)-binding protein of 25 kDa, CAMBP25, calmodulin (CAM)-binding protein of 25 kDa 0.304 -0.467
25 252539_at AT3G45730 unknown 0.304 -0.436
26 246200_at AT4G37240 unknown 0.302 -0.333
27 261405_at AT1G18740 unknown 0.300 -0.458
28 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 0.293 -0.882
29 256755_at AT3G25600 [Calcium-binding EF-hand family protein] 0.278 -0.261
30 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 -0.244 -0.034
31 263617_at AT2G04670 [gypsy-like retrotransposon family, has a 1.2e-313 P-value blast match to GB:AAD27547 polyprotein (Gypsy_Ty3-element) (Oryza sativa subsp. indica)] -0.214 0.008
32 245047_at ATCG00020 PSBA, photosystem II reaction center protein A -0.195 -0.077
33 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.184 -0.037
34 256247_at AT3G66656 AGL91, AGAMOUS-like 91 -0.156 0.029
35 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.153 -0.249
36 245534_at AT4G15150 [glycine-rich protein] -0.152 -0.122
37 266322_at AT2G46690 SAUR32, SMALL AUXIN UPREGULATED RNA 32 -0.144 0.064
38 245376_at AT4G17690 [Peroxidase superfamily protein] -0.144 0.033
39 258748_at AT3G05930 GLP8, germin-like protein 8 -0.137 -0.104
40 264716_at AT1G70170 MMP, matrix metalloproteinase -0.136 -0.099
41 263239_at AT2G16570 ASE1, GLN phosphoribosyl pyrophosphate amidotransferase 1, ATASE, ATASE1, GLN phosphoribosyl pyrophosphate amidotransferase 1 -0.135 0.195
42 248231_at AT5G53770 [Nucleotidyltransferase family protein] -0.135 0.155
43 267101_at AT2G41480 AtPRX25, PRX25, peroxidase 25 -0.133 -0.380
44 262409_at AT1G34842 [non-LTR retroelement reverse transcriptase] -0.132 0.012
45 267227_at AT2G44030 [Galactose oxidase/kelch repeat superfamily protein] -0.132 -0.043
46 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein -0.131 0.113
47 255274_at AT4G05300 unknown -0.130 0.013
48 258360_at AT3G14250 [RING/U-box superfamily protein] -0.125 -0.036
49 255916_at AT5G28550 unknown -0.119 -0.119
50 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 -0.113 0.381
51 251292_at AT3G61920 unknown -0.113 0.044
52 254383_at AT4G21950 unknown -0.112 -0.025
53 250519_at AT5G08460 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.112 -0.032
54 248563_at AT5G49690 [UDP-Glycosyltransferase superfamily protein] -0.110 0.699
55 259201_at AT3G09080 [Transducin/WD40 repeat-like superfamily protein] -0.110 -0.067
56 263596_at AT2G01900 [DNAse I-like superfamily protein] -0.103 -0.095
57 246942_at AT5G25430 [HCO3- transporter family] -0.103 -0.056