4.0:Information of module
pho1
In comparison with atmospheric CO2 low Mg shoot help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009605 response to external stimulus BP 2.274e-53
GO:0045087 innate immune response BP 2.356e-46
GO:0006955 immune response BP 4.060e-46
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043436 oxoacid metabolic process BP 1.463e-14
GO:0006082 organic acid metabolic process BP 1.664e-14
GO:0000023 maltose metabolic process BP 4.824e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pho1		 Log2 signal ratio
atmospheric CO2 low Mg shoot
1 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 1.547 1.357
2 246001_at AT5G20790 unknown 1.448 0.851
3 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 1.300 1.309
4 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 1.292 0.905
5 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] 1.230 0.619
6 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C 1.220 -0.631
7 266766_at AT2G46880 ATPAP14, PAP14, purple acid phosphatase 14 1.188 -0.306
8 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 1.171 6.033
9 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 1.149 1.366
10 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 1.132 2.166
11 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 1.105 1.155
12 248322_at AT5G52760 [Copper transport protein family] 1.065 4.013
13 258887_at AT3G05630 PDLZ2, PHOSPHOLIPASE D ZETA 2, PLDP2, phospholipase D P2, PLDZETA2, PHOSPHOLIPASE D ZETA 2 1.037 1.834
14 252730_at AT3G43110 unknown 1.019 0.513
15 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 1.011 -1.006
16 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.938 -0.306
17 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.927 -0.524
18 245567_at AT4G14630 GLP9, germin-like protein 9 0.910 3.604
19 247314_at AT5G64000 ATSAL2, SAL2 0.882 6.033
20 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.859 2.517
21 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.847 4.186
22 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.843 -0.306
23 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like 0.840 0.218
24 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.840 6.994
25 260005_at AT1G67920 unknown 0.830 3.989
26 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.817 1.956
27 258682_at AT3G08720 ATPK19, Arabidopsis thaliana protein kinase 19, ATPK2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, ATS6K2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, S6K2, serine/threonine protein kinase 2 0.814 2.871
28 256014_at AT1G19200 unknown 0.799 0.384
29 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.793 3.457
30 245148_at AT2G45220 PME17, pectin methylesterase 17 0.792 4.416
31 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.780 0.379
32 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.775 1.015
33 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.769 1.174
34 252006_at AT3G52820 ATPAP22, PURPLE ACID PHOSPHATASE 22, PAP22, purple acid phosphatase 22 0.765 -0.202
35 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.763 1.583
36 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.763 4.049
37 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.759 1.302
38 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.759 5.119
39 254111_at AT4G24890 ATPAP24, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, PAP24, purple acid phosphatase 24 0.757 -0.306
40 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 0.748 0.257
41 250091_at AT5G17340 [Putative membrane lipoprotein] 0.747 -0.306
42 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.747 2.798
43 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.746 2.696
44 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.741 5.302
45 256340_at AT1G72070 [Chaperone DnaJ-domain superfamily protein] 0.737 2.422
46 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.737 1.074
47 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.736 4.619
48 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.732 2.531
49 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.731 7.093
50 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.715 1.275
51 259385_at AT1G13470 unknown 0.708 3.632
52 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.699 2.966
53 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.679 3.419
54 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.679 4.456
55 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.678 2.600
56 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.676 3.960
57 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.673 2.617
58 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.670 -1.190
59 253087_at AT4G36350 ATPAP25, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, PAP25, purple acid phosphatase 25 0.670 -0.306
60 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.659 4.458
61 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.657 0.470
62 266761_at AT2G47130 AtSDR3, SDR3, short-chain dehydrogenase/reductase 2 0.648 4.082
63 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.646 6.112
64 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.641 3.100
65 262231_at AT1G68740 PHO1;H1 0.640 -0.013
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.635 4.135
67 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.635 0.832
68 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.632 3.326
69 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.629 4.985
70 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.627 0.630
71 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] 0.626 5.754
72 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.619 4.260
73 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 0.614 2.616
74 251961_at AT3G53620 AtPPa4, pyrophosphorylase 4, PPa4, pyrophosphorylase 4 0.611 -0.525
75 247393_at AT5G63130 [Octicosapeptide/Phox/Bem1p family protein] 0.608 1.286
76 258792_at AT3G04640 [glycine-rich protein] 0.603 1.716
77 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.609 -2.129
78 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.589 -1.408
79 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.475 -1.471
80 265892_at AT2G15020 unknown -0.453 -1.133
81 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 -0.412 1.133
82 252502_at AT3G46900 COPT2, copper transporter 2 -0.401 0.267
83 255957_at AT1G22160 unknown -0.376 -1.681
84 261942_at AT1G22590 AGL87, AGAMOUS-like 87 -0.374 -0.851
85 249614_at AT5G37300 WSD1 -0.372 -1.690
86 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.331 -1.051
87 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.329 -0.716
88 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] -0.309 -0.307
89 246393_at AT1G58150 unknown -0.299 -0.217
90 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.288 -1.226
91 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.271 -0.441
92 261318_at AT1G53035 unknown -0.265 -0.318
93 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.262 -1.915
94 254803_at AT4G13100 [RING/U-box superfamily protein] -0.258 -1.273
95 258976_at AT3G01980 [NAD(P)-binding Rossmann-fold superfamily protein] -0.252 -0.498
96 257275_at AT3G14450 CID9, CTC-interacting domain 9 -0.251 -1.153
97 256997_at AT3G14067 [Subtilase family protein] -0.242 -0.935
98 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.240 -1.299
99 260155_at AT1G52870 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.239 -0.744
100 261610_at AT1G49560 [Homeodomain-like superfamily protein] -0.235 0.392
101 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 -0.235 0.922
102 248961_at AT5G45650 [subtilase family protein] -0.235 -1.427
103 255899_at AT1G17970 [RING/U-box superfamily protein] -0.234 1.792
104 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.233 -1.368
105 265305_at AT2G20340 AAS, aromatic aldehyde synthase, AtAAS -0.226 -1.988
106 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.224 -0.896
107 245155_at AT5G12470 unknown -0.222 -1.044
108 251788_at AT3G55420 unknown -0.221 -1.011
109 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.218 0.846
110 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.215 -1.105
111 263002_at AT1G54200 unknown -0.211 -0.303
112 246021_at AT5G21100 [Plant L-ascorbate oxidase] -0.210 -1.863
113 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.204 -0.417
114 258782_at AT3G11750 FOLB1 -0.202 0.081
115 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.199 -0.356
116 245291_at AT4G16155 [dihydrolipoyl dehydrogenases] -0.192 -1.041
117 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.191 -1.965
118 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] -0.190 -2.065
119 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.190 -0.606
120 245465_at AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 -0.190 -3.158
121 247733_at AT5G59610 DJC73, DNA J protein C73 -0.189 -0.378
122 253096_at AT4G37330 CYP81D4, cytochrome P450, family 81, subfamily D, polypeptide 4 -0.188 -1.096
123 253440_at AT4G32570 TIFY8, TIFY domain protein 8 -0.188 -1.173
124 248764_at AT5G47640 NF-YB2, nuclear factor Y, subunit B2 -0.185 -0.199
125 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.184 -0.577
126 256130_at AT1G18170 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.176 -1.088
127 252427_at AT3G47640 PYE, POPEYE -0.175 -1.896
128 263943_at AT2G35800 SAMTL, S-adenosyl methionine transporter-like -0.174 -0.737
129 265699_at AT2G03550 [alpha/beta-Hydrolases superfamily protein] -0.174 -1.144
130 265869_at AT2G01760 ARR14, response regulator 14, RR14, response regulator 14 -0.172 -1.687
131 261863_at AT1G50630 unknown -0.168 0.788
132 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.168 -1.592
133 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.166 -0.445
134 258457_at AT3G22425 HISN5A, IGPD, imidazoleglycerol-phosphate dehydratase -0.166 0.293
135 262605_at AT1G15170 [MATE efflux family protein] -0.165 -0.292
136 247891_at AT5G57960 [GTP-binding protein, HflX] -0.163 -0.692
137 246158_at AT5G19855 AtRbcX2, RbcX2, homologue of cyanobacterial RbcX 2 -0.163 -0.912
138 248890_at AT5G46270 [Disease resistance protein (TIR-NBS-LRR class) family] -0.159 0.674
139 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.159 -0.451
140 261522_at AT1G71710 [DNAse I-like superfamily protein] -0.156 -0.792
141 252252_at AT3G49180 RID3, ROOT INITIATION DEFECTIVE 3 -0.156 1.139
142 258511_at AT3G06590 AIF2, ATBS1 Interacting Factor 2 -0.155 -0.336
143 262631_at AT1G06500 unknown -0.155 0.177
144 247415_at AT5G63060 [Sec14p-like phosphatidylinositol transfer family protein] -0.154 -1.034
145 250255_at AT5G13730 SIG4, sigma factor 4, SIGD -0.154 -1.699
146 250691_at AT5G06580 [FAD-linked oxidases family protein] -0.154 0.409
147 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 -0.153 -1.020
148 258528_at AT3G06770 [Pectin lyase-like superfamily protein] -0.152 -0.542
149 253495_at AT4G31850 PGR3, proton gradient regulation 3 -0.152 -1.336
150 250955_at AT5G03190 CPUORF47, conserved peptide upstream open reading frame 47 -0.152 -0.336
151 254328_at AT4G22570 APT3, adenine phosphoribosyl transferase 3 -0.151 0.073