4.0:Information of module
pho1
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009605 response to external stimulus BP 2.274e-53
GO:0045087 innate immune response BP 2.356e-46
GO:0006955 immune response BP 4.060e-46
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043436 oxoacid metabolic process BP 1.463e-14
GO:0006082 organic acid metabolic process BP 1.664e-14
GO:0000023 maltose metabolic process BP 4.824e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
pho1		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 262369_at AT1G73010 AtPPsPase1, pyrophosphate-specific phosphatase1, ATPS2, phosphate starvation-induced gene 2, PPsPase1, pyrophosphate-specific phosphatase1, PS2, phosphate starvation-induced gene 2 1.547 0.250
2 246001_at AT5G20790 unknown 1.448 -0.078
3 259399_at AT1G17710 AtPEPC1, Arabidopsis thaliana phosphoethanolamine/phosphocholine phosphatase 1, PEPC1, phosphoethanolamine/phosphocholine phosphatase 1 1.300 -0.330
4 266132_at AT2G45130 ATSPX3, ARABIDOPSIS THALIANA SPX DOMAIN GENE 3, SPX3, SPX domain gene 3 1.292 -0.106
5 261814_at AT1G08310 [alpha/beta-Hydrolases superfamily protein] 1.230 0.208
6 263391_at AT2G11810 ATMGD3, MGD3, MONOGALACTOSYL DIACYLGLYCEROL SYNTHASE 3, MGDC, monogalactosyldiacylglycerol synthase type C 1.220 -0.216
7 266766_at AT2G46880 ATPAP14, PAP14, purple acid phosphatase 14 1.188 -0.211
8 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 1.171 0.136
9 264893_at AT1G23140 [Calcium-dependent lipid-binding (CaLB domain) family protein] 1.149 0.368
10 259272_at AT3G01290 AtHIR2, HIR2, hypersensitive induced reaction 2 1.132 0.447
11 250561_at AT5G08030 AtGDPD6, GDPD6, glycerophosphodiester phosphodiesterase 6 1.105 -0.532
12 248322_at AT5G52760 [Copper transport protein family] 1.065 0.055
13 258887_at AT3G05630 PDLZ2, PHOSPHOLIPASE D ZETA 2, PLDP2, phospholipase D P2, PLDZETA2, PHOSPHOLIPASE D ZETA 2 1.037 0.015
14 252730_at AT3G43110 unknown 1.019 -0.242
15 246075_at AT5G20410 ATMGD2, ARABIDOPSIS THALIANA MONOGALACTOSYLDIACYLGLYCEROL SYNTHASE 2, MGD2, monogalactosyldiacylglycerol synthase 2 1.011 -0.261
16 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 0.938 0.799
17 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.927 0.811
18 245567_at AT4G14630 GLP9, germin-like protein 9 0.910 0.572
19 247314_at AT5G64000 ATSAL2, SAL2 0.882 0.011
20 248551_at AT5G50200 ATNRT3.1, NRT3.1, NITRATE TRANSPORTER 3.1, WR3, WOUND-RESPONSIVE 3 0.859 0.387
21 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.847 0.810
22 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 0.843 0.311
23 251026_at AT5G02200 FHL, far-red-elongated hypocotyl1-like 0.840 0.163
24 260116_at AT1G33960 AIG1, AVRRPT2-INDUCED GENE 1 0.840 -0.007
25 260005_at AT1G67920 unknown 0.830 0.352
26 253519_at AT4G31240 AtNRX2, NRX2, nucleoredoxin 2 0.817 0.505
27 258682_at AT3G08720 ATPK19, Arabidopsis thaliana protein kinase 19, ATPK2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, ATS6K2, ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, S6K2, serine/threonine protein kinase 2 0.814 0.285
28 256014_at AT1G19200 unknown 0.799 0.361
29 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 0.793 0.099
30 245148_at AT2G45220 PME17, pectin methylesterase 17 0.792 0.091
31 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.780 0.172
32 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 0.775 -0.140
33 246098_at AT5G20400 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.769 0.344
34 252006_at AT3G52820 ATPAP22, PURPLE ACID PHOSPHATASE 22, PAP22, purple acid phosphatase 22 0.765 0.292
35 256243_at AT3G12500 ATHCHIB, basic chitinase, B-CHI, CHI-B, HCHIB, basic chitinase, PR-3, PATHOGENESIS-RELATED 3, PR3, PATHOGENESIS-RELATED 3 0.763 1.072
36 252060_at AT3G52430 ATPAD4, ARABIDOPSIS PHYTOALEXIN DEFICIENT 4, PAD4, PHYTOALEXIN DEFICIENT 4 0.763 -0.003
37 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.759 0.062
38 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.759 0.019
39 254111_at AT4G24890 ATPAP24, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 24, PAP24, purple acid phosphatase 24 0.757 -0.133
40 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 0.748 0.298
41 250091_at AT5G17340 [Putative membrane lipoprotein] 0.747 0.632
42 245329_at AT4G14365 XBAT34, XB3 ortholog 4 in Arabidopsis thaliana 0.747 0.707
43 259442_at AT1G02310 MAN1, endo-beta-mannanase 1 0.746 -0.006
44 257623_at AT3G26210 CYP71B23, cytochrome P450, family 71, subfamily B, polypeptide 23 0.741 0.670
45 256340_at AT1G72070 [Chaperone DnaJ-domain superfamily protein] 0.737 0.374
46 253485_at AT4G31800 ATWRKY18, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY18, WRKY DNA-binding protein 18 0.737 0.296
47 249890_at AT5G22570 ATWRKY38, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 38, WRKY38, WRKY DNA-binding protein 38 0.736 0.157
48 256100_at AT1G13750 [Purple acid phosphatases superfamily protein] 0.732 0.024
49 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.731 0.085
50 262366_at AT1G72890 [Disease resistance protein (TIR-NBS class)] 0.715 -0.092
51 259385_at AT1G13470 unknown 0.708 -0.032
52 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.699 0.032
53 262177_at AT1G74710 ATICS1, ARABIDOPSIS ISOCHORISMATE SYNTHASE 1, EDS16, ENHANCED DISEASE SUSCEPTIBILITY TO ERYSIPHE ORONTII 16, ICS1, ISOCHORISMATE SYNTHASE 1, SID2, SALICYLIC ACID INDUCTION DEFICIENT 2 0.679 -0.573
54 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.679 0.035
55 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.678 0.886
56 246405_at AT1G57630 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.676 0.094
57 248327_at AT5G52750 [Heavy metal transport/detoxification superfamily protein ] 0.673 0.421
58 263168_at AT1G03020 [Thioredoxin superfamily protein] 0.670 -0.320
59 253087_at AT4G36350 ATPAP25, ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, PAP25, purple acid phosphatase 25 0.670 -0.121
60 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.659 -0.040
61 263847_at AT2G36970 [UDP-Glycosyltransferase superfamily protein] 0.657 -0.094
62 266761_at AT2G47130 AtSDR3, SDR3, short-chain dehydrogenase/reductase 2 0.648 0.762
63 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.646 0.136
64 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.641 0.006
65 262231_at AT1G68740 PHO1;H1 0.640 -0.247
66 246099_at AT5G20230 ATBCB, blue-copper-binding protein, BCB, BLUE COPPER BINDING PROTEIN, BCB, blue-copper-binding protein, SAG14, SENESCENCE ASSOCIATED GENE 14 0.635 0.577
67 265067_at AT1G03850 ATGRXS13, glutaredoxin 13, GRXS13, glutaredoxin 13 0.635 0.122
68 250515_at AT5G09570 [Cox19-like CHCH family protein] 0.632 -0.109
69 265658_at AT2G13810 ALD1, AGD2-like defense response protein 1, AtALD1, EDTS5, eds two suppressor 5 0.629 -0.067
70 255360_at AT4G03960 AtPFA-DSP4, PFA-DSP4, plant and fungi atypical dual-specificity phosphatase 4 0.627 0.248
71 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] 0.626 0.791
72 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.619 0.080
73 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 0.614 -0.176
74 251961_at AT3G53620 AtPPa4, pyrophosphorylase 4, PPa4, pyrophosphorylase 4 0.611 0.031
75 247393_at AT5G63130 [Octicosapeptide/Phox/Bem1p family protein] 0.608 0.157
76 258792_at AT3G04640 [glycine-rich protein] 0.603 0.042
77 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 -0.609 -0.372
78 249917_at AT5G22460 [alpha/beta-Hydrolases superfamily protein] -0.589 0.492
79 266357_at AT2G32290 BAM6, beta-amylase 6, BMY5, BETA-AMYLASE 5 -0.475 -0.034
80 265892_at AT2G15020 unknown -0.453 -0.946
81 264071_at AT2G27920 SCPL51, serine carboxypeptidase-like 51 -0.412 0.191
82 252502_at AT3G46900 COPT2, copper transporter 2 -0.401 -0.407
83 255957_at AT1G22160 unknown -0.376 -0.258
84 261942_at AT1G22590 AGL87, AGAMOUS-like 87 -0.374 -0.815
85 249614_at AT5G37300 WSD1 -0.372 -0.069
86 251028_at AT5G02230 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] -0.331 0.240
87 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.329 -0.431
88 258609_at AT3G02910 [AIG2-like (avirulence induced gene) family protein] -0.309 0.120
89 246393_at AT1G58150 unknown -0.299 -0.530
90 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.288 -0.021
91 252624_at AT3G44735 ATPSK3, PHYTOSULFOKINE 3 PRECURSOR, PSK1, PSK3, PHYTOSULFOKINE 3 PRECURSOR -0.271 -0.130
92 261318_at AT1G53035 unknown -0.265 0.233
93 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.262 -0.282
94 254803_at AT4G13100 [RING/U-box superfamily protein] -0.258 -0.143
95 258976_at AT3G01980 [NAD(P)-binding Rossmann-fold superfamily protein] -0.252 -0.193
96 257275_at AT3G14450 CID9, CTC-interacting domain 9 -0.251 -0.168
97 256997_at AT3G14067 [Subtilase family protein] -0.242 -0.166
98 251586_at AT3G58070 GIS, GLABROUS INFLORESCENCE STEMS -0.240 -0.208
99 260155_at AT1G52870 [Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein] -0.239 -0.641
100 261610_at AT1G49560 [Homeodomain-like superfamily protein] -0.235 0.099
101 250412_at AT5G11150 ATVAMP713, vesicle-associated membrane protein 713, VAMP713, VAMP713, vesicle-associated membrane protein 713 -0.235 0.012
102 248961_at AT5G45650 [subtilase family protein] -0.235 -0.366
103 255899_at AT1G17970 [RING/U-box superfamily protein] -0.234 -0.336
104 255437_at AT4G03060 AOP2, alkenyl hydroxalkyl producing 2 -0.233 -0.284
105 265305_at AT2G20340 AAS, aromatic aldehyde synthase, AtAAS -0.226 -0.542
106 248657_at AT5G48570 ATFKBP65, FKBP65, ROF2 -0.224 0.319
107 245155_at AT5G12470 unknown -0.222 -0.079
108 251788_at AT3G55420 unknown -0.221 -0.115
109 245748_at AT1G51140 AKS1, ABA-responsive kinase substrate 1, FBH3, FLOWERING BHLH 3 -0.218 -0.113
110 246275_at AT4G36540 BEE2, BR enhanced expression 2 -0.215 -0.238
111 263002_at AT1G54200 unknown -0.211 -0.076
112 246021_at AT5G21100 [Plant L-ascorbate oxidase] -0.210 -0.347
113 256145_at AT1G48750 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.204 0.114
114 258782_at AT3G11750 FOLB1 -0.202 -0.198
115 263599_at AT2G01830 AHK4, ARABIDOPSIS HISTIDINE KINASE 4, ATCRE1, CRE1, CYTOKININ RESPONSE 1, WOL, WOODEN LEG, WOL1, WOODEN LEG 1 -0.199 0.052
116 245291_at AT4G16155 [dihydrolipoyl dehydrogenases] -0.192 -0.348
117 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.191 -0.115
118 260011_at AT1G68110 [ENTH/ANTH/VHS superfamily protein] -0.190 -0.212
119 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.190 0.096
120 245465_at AT4G16590 ATCSLA01, cellulose synthase-like A01, ATCSLA1, CELLULOSE SYNTHASE-LIKE A1, CSLA01, CSLA01, cellulose synthase-like A01 -0.190 -0.180
121 247733_at AT5G59610 DJC73, DNA J protein C73 -0.189 -0.190
122 253096_at AT4G37330 CYP81D4, cytochrome P450, family 81, subfamily D, polypeptide 4 -0.188 -0.064
123 253440_at AT4G32570 TIFY8, TIFY domain protein 8 -0.188 -0.261
124 248764_at AT5G47640 NF-YB2, nuclear factor Y, subunit B2 -0.185 -0.253
125 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.184 0.053
126 256130_at AT1G18170 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.176 -0.449
127 252427_at AT3G47640 PYE, POPEYE -0.175 -0.252
128 263943_at AT2G35800 SAMTL, S-adenosyl methionine transporter-like -0.174 -0.301
129 265699_at AT2G03550 [alpha/beta-Hydrolases superfamily protein] -0.174 -0.407
130 265869_at AT2G01760 ARR14, response regulator 14, RR14, response regulator 14 -0.172 -0.412
131 261863_at AT1G50630 unknown -0.168 0.212
132 257876_at AT3G17130 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.168 -0.109
133 253806_at AT4G28270 ATRMA2, RMA2, RING membrane-anchor 2 -0.166 0.037
134 258457_at AT3G22425 HISN5A, IGPD, imidazoleglycerol-phosphate dehydratase -0.166 -0.047
135 262605_at AT1G15170 [MATE efflux family protein] -0.165 0.198
136 247891_at AT5G57960 [GTP-binding protein, HflX] -0.163 -0.363
137 246158_at AT5G19855 AtRbcX2, RbcX2, homologue of cyanobacterial RbcX 2 -0.163 -0.246
138 248890_at AT5G46270 [Disease resistance protein (TIR-NBS-LRR class) family] -0.159 -0.246
139 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.159 0.482
140 261522_at AT1G71710 [DNAse I-like superfamily protein] -0.156 -0.156
141 252252_at AT3G49180 RID3, ROOT INITIATION DEFECTIVE 3 -0.156 0.117
142 258511_at AT3G06590 AIF2, ATBS1 Interacting Factor 2 -0.155 -0.041
143 262631_at AT1G06500 unknown -0.155 0.036
144 247415_at AT5G63060 [Sec14p-like phosphatidylinositol transfer family protein] -0.154 -0.316
145 250255_at AT5G13730 SIG4, sigma factor 4, SIGD -0.154 -0.720
146 250691_at AT5G06580 [FAD-linked oxidases family protein] -0.154 -0.107
147 247549_at AT5G61420 AtMYB28, HAG1, HIGH ALIPHATIC GLUCOSINOLATE 1, MYB28, myb domain protein 28, PMG1, PRODUCTION OF METHIONINE-DERIVED GLUCOSINOLATE 1 -0.153 -0.453
148 258528_at AT3G06770 [Pectin lyase-like superfamily protein] -0.152 -0.156
149 253495_at AT4G31850 PGR3, proton gradient regulation 3 -0.152 -0.459
150 250955_at AT5G03190 CPUORF47, conserved peptide upstream open reading frame 47 -0.152 0.001
151 254328_at AT4G22570 APT3, adenine phosphoribosyl transferase 3 -0.151 -0.219