4.0:Information of module
ADD3
In comparison with rGRF help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 4.222e-43
GO:0006081 cellular aldehyde metabolic process BP 6.672e-42
GO:0009240 isopentenyl diphosphate biosynthetic pro... BP 3.618e-34
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048193 Golgi vesicle transport BP 1.202e-08
GO:0016192 vesicle-mediated transport BP 1.035e-07
GO:0006888 ER to Golgi vesicle-mediated transport BP 2.024e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ADD3		 Log2 signal ratio
rGRF
1 246380_at AT1G57750 CYP96A15, cytochrome P450, family 96, subfamily A, polypeptide 15, MAH1, MID-CHAIN ALKANE HYDROXYLASE 1 0.634 -0.009
2 266078_at AT2G40670 ARR16, response regulator 16, RR16, response regulator 16 0.603 -0.106
3 258751_at AT3G05890 RCI2B, RARE-COLD-INDUCIBLE 2B 0.591 -0.092
4 263595_at AT2G01890 ATPAP8, PURPLE ACID PHOSPHATASE 8, PAP8, purple acid phosphatase 8 0.510 -0.094
5 253191_at AT4G35350 XCP1, xylem cysteine peptidase 1 0.488 -0.000
6 264931_at AT1G60590 [Pectin lyase-like superfamily protein] 0.478 -0.102
7 250533_at AT5G08640 ATFLS1, FLS, FLAVONOL SYNTHASE, FLS1, flavonol synthase 1 0.475 -0.298
8 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.475 0.036
9 254234_at AT4G23680 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.461 0.053
10 259801_at AT1G72230 [Cupredoxin superfamily protein] 0.450 0.022
11 267094_at AT2G38080 ATLMCO4, ARABIDOPSIS LACCASE-LIKE MULTICOPPER OXIDASE 4, IRX12, IRREGULAR XYLEM 12, LAC4, LACCASE 4, LMCO4, LACCASE-LIKE MULTICOPPER OXIDASE 4 0.441 -0.054
12 257642_at AT3G25710 ATAIG1, BHLH32, basic helix-loop-helix 32, TMO5, TARGET OF MONOPTEROS 5 0.429 -0.085
13 256781_at AT3G13650 [Disease resistance-responsive (dirigent-like protein) family protein] 0.410 0.020
14 245319_at AT4G16146 [cAMP-regulated phosphoprotein 19-related protein] 0.391 0.066
15 261834_at AT1G10640 [Pectin lyase-like superfamily protein] 0.388 -0.028
16 257947_at AT3G21720 ICL, isocitrate lyase 0.387 0.051
17 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.386 -0.254
18 261653_at AT1G01900 ATSBT1.1, SBTI1.1 0.386 -0.056
19 265539_at AT2G15830 unknown 0.381 -0.100
20 250043_at AT5G18430 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.362 -0.179
21 248201_at AT5G54180 PTAC15, plastid transcriptionally active 15 0.360 -0.038
22 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 0.351 -0.001
23 245965_at AT5G19730 [Pectin lyase-like superfamily protein] 0.343 -0.090
24 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.341 -0.054
25 262693_at AT1G62780 unknown 0.337 -0.072
26 257896_at AT3G16920 ATCTL2, CTL2, chitinase-like protein 2 0.324 -0.019
27 258530_at AT3G06840 unknown 0.320 -0.051
28 257909_at AT3G25480 [Rhodanese/Cell cycle control phosphatase superfamily protein] 0.311 -0.067
29 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A 0.311 -0.285
30 262086_at AT1G56050 [GTP-binding protein-related] 0.304 -0.059
31 247486_at AT5G62140 unknown 0.303 -0.153
32 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] 0.299 -0.103
33 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 0.298 0.002
34 249439_at AT5G40020 [Pathogenesis-related thaumatin superfamily protein] 0.292 0.004
35 252278_at AT3G49530 ANAC062, NAC domain containing protein 62, NAC062, NAC domain containing protein 62, NTL6, NTM1 (NAC WITH TRANSMEMBRANE MOTIF 1)-LIKE 6 0.289 -0.028
36 251669_at AT3G57180 BPG2, BRASSINAZOLE(BRZ) INSENSITIVE PALE GREEN 2 0.289 -0.031
37 254256_at AT4G23180 CRK10, cysteine-rich RLK (RECEPTOR-like protein kinase) 10, RLK4 0.288 0.135
38 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.287 0.084
39 266578_at AT2G23910 [NAD(P)-binding Rossmann-fold superfamily protein] 0.287 -0.030
40 262236_at AT1G48330 unknown 0.285 0.056
41 261660_at AT1G18370 ATNACK1, ARABIDOPSIS NPK1-ACTIVATING KINESIN 1, HIK, HINKEL, NACK1, NPK1-ACTIVATING KINESIN 1 0.284 0.009
42 258222_at AT3G15680 [Ran BP2/NZF zinc finger-like superfamily protein] 0.280 -0.040
43 265475_at AT2G15620 ATHNIR, ARABIDOPSIS THALIANA NITRITE REDUCTASE, NIR, NITRITE REDUCTASE, NIR1, nitrite reductase 1 0.279 -0.064
44 257625_at AT3G26230 CYP71B24, cytochrome P450, family 71, subfamily B, polypeptide 24 0.278 0.020
45 255647_at AT4G00900 ATECA2, ARABIDOPSIS THALIANA ER-TYPE CA2+-ATPASE 2, ECA2, ER-type Ca2+-ATPase 2 0.277 -0.066
46 264343_at AT1G11850 unknown 0.276 -0.076
47 261593_at AT1G33170 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.276 0.009
48 264636_at AT1G65490 unknown 0.276 -0.118
49 265656_at AT2G13820 AtXYP2, XYP2, xylogen protein 2 0.275 -0.028
50 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 0.273 -0.104
51 248908_at AT5G45800 MEE62, maternal effect embryo arrest 62 0.269 -0.002
52 261636_at AT1G50110 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.268 -0.065
53 245027_at AT2G26550 HO2, heme oxygenase 2 0.267 -0.066
54 245747_at AT1G51100 CRR41, CHLORORESPIRATORY REDUCTION 41 0.264 -0.074
55 254125_at AT4G24670 TAR2, tryptophan aminotransferase related 2 0.259 -0.091
56 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.257 -0.153
57 261806_at AT1G30510 ATRFNR2, root FNR 2, RFNR2, root FNR 2 0.254 -0.031
58 248963_at AT5G45700 [Haloacid dehalogenase-like hydrolase (HAD) superfamily protein] 0.253 -0.020
59 250794_at AT5G05270 AtCHIL, CHIL, chalcone isomerase like 0.252 -0.096
60 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 0.252 0.010
61 255874_at AT2G40550 ETG1, E2F target gene 1 0.251 -0.096
62 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 0.250 0.027
63 266912_at AT2G45900 TRM13, TON1 Recruiting Motif 13 0.247 -0.185
64 261801_at AT1G30520 AAE14, acyl-activating enzyme 14 0.245 -0.000
65 250146_at AT5G14660 ATDEF2, DEF2, PDF1B, peptide deformylase 1B 0.245 -0.060
66 252215_at AT3G50240 KICP-02 0.243 -0.016
67 251050_at AT5G02440 unknown 0.241 -0.012
68 254226_at AT4G23690 AtDIR6, Arabidopsis thaliana dirigent protein 6, DIR6, dirigent protein 6 0.239 -0.020
69 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 0.232 -0.043
70 256304_at AT1G69523 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.232 -0.092
71 260388_at AT1G74070 [Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein] 0.231 -0.013
72 257151_at AT3G27200 [Cupredoxin superfamily protein] 0.230 -0.022
73 253589_at AT4G30825 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.229 -0.082
74 251631_at AT3G57430 OTP84, ORGANELLE TRANSCRIPT PROCESSING 84 0.228 -0.088
75 265484_at AT2G15820 OTP51, ORGANELLE TRANSCRIPT PROCESSING 51 0.227 -0.048
76 258183_at AT3G21550 AtDMP2, Arabidopsis thaliana DUF679 domain membrane protein 2, DMP2, DUF679 domain membrane protein 2 0.223 0.007
77 250764_at AT5G05960 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.221 0.048
78 252001_at AT3G52750 FTSZ2-2 0.220 -0.017
79 260325_at AT1G63940 MDAR6, monodehydroascorbate reductase 6 0.220 0.009
80 261602_at AT1G49630 ATPREP2, presequence protease 2, PREP2, presequence protease 2 0.218 -0.028
81 246265_at AT1G31860 AT-IE, HISN2, HISTIDINE BIOSYNTHESIS 2 0.213 -0.021
82 253297_at AT4G33810 [Glycosyl hydrolase superfamily protein] 0.212 -0.008
83 251151_at AT3G63170 AtFAP1, FAP1, fatty-acid-binding protein 1 0.210 0.012
84 248380_at AT5G51820 ATPGMP, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, PGM, phosphoglucomutase, PGM1, STF1, STARCH-FREE 1 0.210 -0.024
85 251753_at AT3G55760 unknown 0.209 -0.029
86 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.208 0.005
87 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 0.206 -0.019
88 248023_at AT5G56450 PM-ANT 0.206 -0.025
89 249129_at AT5G43080 CYCA3;1, Cyclin A3;1 0.205 -0.077
90 253317_at AT4G33960 unknown 0.205 -0.013
91 260065_at AT1G73760 [RING/U-box superfamily protein] 0.204 -0.013
92 262081_at AT1G59540 ZCF125 0.203 0.019
93 258055_at AT3G16250 NDF4, NDH-dependent cyclic electron flow 1, PnsB3, Photosynthetic NDH subcomplex B 3 0.203 -0.040
94 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] 0.203 0.012
95 248057_at AT5G55520 unknown 0.203 0.000
96 248382_at AT5G51890 [Peroxidase superfamily protein] 0.199 0.028
97 247586_at AT5G60660 PIP2;4, plasma membrane intrinsic protein 2;4, PIP2F 0.198 -0.018
98 256459_at AT1G36180 ACC2, acetyl-CoA carboxylase 2 -0.795 -0.019
99 255893_at AT1G17960 [Threonyl-tRNA synthetase] -0.752 0.005
100 248260_at AT5G53240 unknown -0.681 0.012
101 266989_at AT2G39330 JAL23, jacalin-related lectin 23 -0.672 0.237
102 265387_at AT2G20670 unknown -0.574 0.201
103 247615_at AT5G60250 [zinc finger (C3HC4-type RING finger) family protein] -0.540 0.036
104 247515_at AT5G61740 ABCA10, ATP-binding cassette A10, ATATH14, ARABIDOPSIS THALIANA ABC2 HOMOLOG 14, ATH14, ABC2 homolog 14 -0.533 -0.051
105 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 -0.491 0.167
106 264524_at AT1G10070 ATBCAT-2, branched-chain amino acid transaminase 2, BCAT-2, branched-chain amino acid transaminase 2, BCAT2, branched-chain amino acid transferase 2 -0.491 0.164
107 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 -0.422 -0.033
108 254287_at AT4G22960 unknown -0.407 0.031
109 249784_at AT5G24280 GMI1, GAMMA-IRRADIATION AND MITOMYCIN C INDUCED 1 -0.395 -0.021
110 246103_at AT5G28640 AN3, ANGUSTIFOLIA 3, ATGIF1, ARABIDOPSIS GRF1-INTERACTING FACTOR 1, GIF, GRF1-INTERACTING FACTOR, GIF1, GRF1-INTERACTING FACTOR 1 -0.376 -0.041
111 262001_at AT1G33790 [jacalin lectin family protein] -0.375 0.092
112 256188_at AT1G30160 unknown -0.373 -0.063
113 251282_at AT3G61630 CRF6, cytokinin response factor 6 -0.370 0.010
114 263179_at AT1G05710 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.364 -0.005
115 250971_at AT5G02810 APRR7, PRR7, pseudo-response regulator 7 -0.344 0.058
116 264166_at AT1G65370 [TRAF-like family protein] -0.333 0.001
117 249923_at AT5G19120 [Eukaryotic aspartyl protease family protein] -0.330 0.124
118 259802_at AT1G72260 THI2.1, thionin 2.1, THI2.1.1 -0.329 0.335
119 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.313 0.015
120 263633_at AT2G04890 SCL21, SCARECROW-like 21 -0.306 0.040
121 266456_at AT2G22770 NAI1 -0.303 0.164
122 245702_at AT5G04220 ATSYTC, NTMC2T1.3, NTMC2TYPE1.3, SYT3, synaptotagmin 3, SYTC -0.302 0.061
123 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 -0.294 0.151
124 265988_at AT2G24255 unknown -0.291 0.002
125 250380_at AT5G11600 unknown -0.284 0.083
126 248668_at AT5G48720 XRI, X-RAY INDUCED TRANSCRIPT, XRI1, X-RAY INDUCED TRANSCRIPT 1 -0.284 -0.003
127 261663_at AT1G18330 EPR1, EARLY-PHYTOCHROME-RESPONSIVE1, RVE7, REVEILLE 7 -0.280 -0.093
128 257381_at AT2G37950 [RING/FYVE/PHD zinc finger superfamily protein] -0.272 0.032
129 258263_at AT3G15780 unknown -0.268 0.045
130 245136_at AT2G45210 SAG201, senescence-associated gene 201, SAUR36, SMALL AUXIN UPREGULATED 36 -0.267 0.070
131 248868_at AT5G46780 [VQ motif-containing protein] -0.265 0.053
132 266797_at AT2G22840 AtGRF1, growth-regulating factor 1, GRF1, growth-regulating factor 1 -0.255 0.028
133 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 -0.255 -0.009
134 257735_at AT3G27400 [Pectin lyase-like superfamily protein] -0.238 -0.017
135 249215_at AT5G42800 DFR, dihydroflavonol 4-reductase, M318, TT3 -0.236 -0.030
136 257952_at AT3G21770 [Peroxidase superfamily protein] -0.232 0.038
137 264658_at AT1G09910 [Rhamnogalacturonate lyase family protein] -0.231 0.052
138 257074_at AT3G19660 unknown -0.229 0.052
139 247317_at AT5G64060 anac103, NAC domain containing protein 103, NAC103, NAC domain containing protein 103 -0.224 -0.003
140 254415_at AT4G21326 ATSBT3.12, subtilase 3.12, SBT3.12, subtilase 3.12 -0.222 0.022
141 263914_at AT2G36400 AtGRF3, growth-regulating factor 3, GRF3, growth-regulating factor 3 -0.220 0.298
142 247835_at AT5G57910 unknown -0.212 0.169
143 248395_at AT5G52120 AtPP2-A14, phloem protein 2-A14, PP2-A14, phloem protein 2-A14 -0.210 0.015
144 253101_at AT4G37430 CYP81F1, CYTOCHROME P450 MONOOXYGENASE 81F1, CYP91A2, cytochrome P450, family 91, subfamily A, polypeptide 2 -0.209 0.005
145 256597_at AT3G28500 [60S acidic ribosomal protein family] -0.208 0.004
146 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.206 0.116
147 264379_at AT2G25200 unknown -0.204 0.123
148 266360_at AT2G32250 FRS2, FAR1-related sequence 2 -0.203 0.014
149 258604_at AT3G02980 MCC1, MEIOTIC CONTROL OF CROSSOVERS1 -0.202 -0.043
150 266745_at AT2G02950 PKS1, phytochrome kinase substrate 1 -0.200 0.052
151 252387_at AT3G47800 [Galactose mutarotase-like superfamily protein] -0.200 0.090
152 261145_at AT1G19730 ATH4, thioredoxin H-type 4, ATTRX4 -0.198 -0.020
153 252685_at AT3G44410 [pseudogene] -0.197 0.028
154 261395_at AT1G79700 WRI4, WRINKLED 4 -0.195 0.162
155 247345_at AT5G63760 ARI15, ARIADNE 15, ATARI15, ARABIDOPSIS ARIADNE 15 -0.194 -0.048
156 261451_at AT1G21060 unknown -0.192 0.020
157 256212_at AT1G50970 [Membrane trafficking VPS53 family protein] -0.191 -0.003
158 262136_at AT1G77850 ARF17, auxin response factor 17 -0.190 -0.020
159 253829_at AT4G28040 UMAMIT33, Usually multiple acids move in and out Transporters 33 -0.188 0.155
160 247057_at AT5G66770 [GRAS family transcription factor] -0.188 -0.080
161 251057_at AT5G01780 [2-oxoglutarate-dependent dioxygenase family protein] -0.187 0.004
162 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] -0.186 0.007
163 248916_at AT5G45840 [Leucine-rich repeat protein kinase family protein] -0.186 0.005
164 259000_at AT3G01860 unknown -0.183 -0.003
165 266984_at AT2G39570 ACR9, ACT domain repeats 9 -0.183 0.043
166 262178_at AT1G77860 KOM, KOMPEITO -0.181 -0.010
167 248037_at AT5G55930 ATOPT1, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, OPT1, oligopeptide transporter 1 -0.181 0.076
168 262797_at AT1G20840 AtTMT1, TMT1, tonoplast monosaccharide transporter1 -0.179 0.008
169 244964_at ATCG00580 PSBE, photosystem II reaction center protein E -0.179 -0.006
170 249261_at AT5G41710 [Mutator-like transposase family, has a 6.2e-18 P-value blast match to GB:AAA21566 mudrA of transposon=MuDR (MuDr-element) (Zea mays)] -0.178 -0.017
171 262049_at AT1G80180 unknown -0.178 0.025
172 262204_at AT2G01100 unknown -0.178 0.016
173 256099_at AT1G13710 CYP78A5, cytochrome P450, family 78, subfamily A, polypeptide 5, KLU, KLUH -0.177 -0.042
174 248029_at AT5G55700 BAM4, beta-amylase 4, BMY6, BETA-AMYLASE 6 -0.175 0.087
175 247828_at AT5G58510 unknown -0.174 0.022
176 247792_at AT5G58787 [RING/U-box superfamily protein] -0.173 0.117
177 245572_at AT4G14720 PPD2, PEAPOD 2, TIFY4B -0.170 0.022
178 251869_at AT3G54500 LNK2, night light-inducible and clock-regulated 2 -0.167 -0.016
179 246759_at AT5G27950 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.166 0.029
180 261398_at AT1G79610 ATNHX6, ARABIDOPSIS NA+/H+ ANTIPORTER 6, NHX6, Na+/H+ antiporter 6 -0.165 -0.047
181 258647_at AT3G07870 [F-box and associated interaction domains-containing protein] -0.163 0.034
182 250167_at AT5G15310 ATMIXTA, ATMYB16, myb domain protein 16, MYB16, myb domain protein 16 -0.162 -0.016
183 247890_at AT5G57940 ATCNGC5, cyclic nucleotide gated channel 5, CNGC5, cyclic nucleotide gated channel 5 -0.162 0.016
184 248256_at AT5G53360 [TRAF-like superfamily protein] -0.159 0.045
185 260181_at AT1G70710 ATGH9B1, glycosyl hydrolase 9B1, CEL1, CELLULASE 1, GH9B1, glycosyl hydrolase 9B1 -0.158 -0.010
186 245022_at ATCG00560 PSBL, photosystem II reaction center protein L -0.157 -0.003
187 252157_at AT3G50430 unknown -0.156 0.043
188 262813_at AT1G11670 [MATE efflux family protein] -0.156 0.009
189 261815_at AT1G08320 bZIP21, TGA9, TGACG (TGA) motif-binding protein 9 -0.156 -0.014
190 263898_at AT2G21950 SKIP6, SKP1 interacting partner 6 -0.155 -0.005
191 256058_at AT1G07240 UGT71C5, UDP-glucosyl transferase 71C5 -0.153 0.060
192 263542_at AT2G21630 [Sec23/Sec24 protein transport family protein] -0.152 0.024
193 259583_at AT1G28070 unknown -0.152 -0.003