4.0:Information of module
CDB1-Knockout
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009753 response to jasmonic acid BP 5.249e-08
GO:0008219 cell death BP 2.635e-06
GO:0016265 death BP 2.635e-06
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010200 response to chitin BP 2.478e-20
GO:0010243 response to organonitrogen compound BP 7.752e-20
GO:1901698 response to nitrogen compound BP 2.385e-17
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
CDB1-Knockout		 Log2 signal ratio
root callus inducing medium 12 h
1 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.525 0.122
2 249052_at AT5G44420 LCR77, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 77, PDF1.2, plant defensin 1.2, PDF1.2A, PLANT DEFENSIN 1.2A 0.499 0.088
3 249675_at AT5G35940 [Mannose-binding lectin superfamily protein] 0.463 -0.455
4 252415_at AT3G47340 ASN1, glutamine-dependent asparagine synthase 1, AT-ASN1, ARABIDOPSIS THALIANA GLUTAMINE-DEPENDENT ASPARAGINE SYNTHASE 1, DIN6, DARK INDUCIBLE 6 0.434 0.049
5 260706_at AT1G32350 AOX1D, alternative oxidase 1D 0.355 -0.388
6 256589_at AT3G28740 CYP81D11, cytochrome P450, family 81, subfamily D, polypeptide 11 0.338 -0.221
7 264514_at AT1G09500 [NAD(P)-binding Rossmann-fold superfamily protein] 0.307 0.019
8 252549_at AT3G45860 CRK4, cysteine-rich RLK (RECEPTOR-like protein kinase) 4 0.285 -0.072
9 249971_at AT5G19110 [Eukaryotic aspartyl protease family protein] 0.259 -0.546
10 258182_at AT3G21500 DXL1, DXS-like 1, DXPS1, 1-deoxy-D-xylulose 5-phosphate synthase 1, DXS2, 1-deoxy-D-xylulose 5-phosphate (DXP) synthase 2 0.248 0.252
11 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 0.233 0.026
12 265387_at AT2G20670 unknown 0.227 -0.472
13 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.214 -0.538
14 256603_at AT3G28270 unknown 0.214 -0.019
15 249203_at AT5G42590 CYP71A16, cytochrome P450, family 71, subfamily A, polypeptide 16, MRO, marneral oxidase 0.213 -0.127
16 262986_at AT1G23390 [Kelch repeat-containing F-box family protein] 0.196 0.077
17 264238_at AT1G54740 unknown 0.166 0.164
18 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.166 -0.248
19 246825_at AT5G26260 [TRAF-like family protein] 0.160 -0.092
20 253101_at AT4G37430 CYP81F1, CYTOCHROME P450 MONOOXYGENASE 81F1, CYP91A2, cytochrome P450, family 91, subfamily A, polypeptide 2 0.150 0.048
21 250669_at AT5G06870 ATPGIP2, ARABIDOPSIS POLYGALACTURONASE INHIBITING PROTEIN 2, PGIP2, polygalacturonase inhibiting protein 2 0.139 -0.180
22 246238_at AT4G36670 AtPLT6, AtPMT6, PLT6, polyol transporter 6, PMT6, polyol/monosaccharide transporter 6 0.137 0.034
23 246791_at AT5G27280 [Zim17-type zinc finger protein] -0.614 -0.176
24 253643_at AT4G29780 unknown -0.329 -0.503
25 253832_at AT4G27654 unknown -0.326 -0.805
26 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.314 -0.133
27 254120_at AT4G24570 DIC2, dicarboxylate carrier 2 -0.309 -0.326
28 262211_at AT1G74930 ORA47 -0.281 -0.914
29 248448_at AT5G51190 [Integrase-type DNA-binding superfamily protein] -0.271 -0.303
30 254926_at AT4G11280 ACS6, 1-aminocyclopropane-1-carboxylic acid (acc) synthase 6, ATACS6 -0.265 -0.150
31 263783_at AT2G46400 ATWRKY46, WRKY DNA-BINDING PROTEIN 46, WRKY46, WRKY DNA-binding protein 46 -0.216 -0.686
32 249197_at AT5G42380 CML37, calmodulin like 37 -0.204 -0.621
33 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 -0.194 -0.660
34 266316_at AT2G27080 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.186 -0.249
35 256009_at AT1G19210 [Integrase-type DNA-binding superfamily protein] -0.174 -0.999
36 252193_at AT3G50060 MYB77, myb domain protein 77 -0.164 -0.397
37 267623_at AT2G39650 unknown -0.163 -0.100
38 261648_at AT1G27730 STZ, salt tolerance zinc finger, ZAT10 -0.159 -0.346
39 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.156 -0.391
40 246777_at AT5G27420 ATL31, Arabidopsis toxicos en levadura 31, CNI1, carbon/nitrogen insensitive 1 -0.153 -0.617
41 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.152 -0.216
42 259953_at AT1G74810 BOR5, REQUIRES HIGH BORON 5 -0.148 -0.046
43 260656_at AT1G19380 unknown -0.127 -0.314
44 259879_at AT1G76650 CML38, calmodulin-like 38 -0.124 -0.532