4.0:Information of module
red illumination +lincomycin
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006626 protein targeting to mitochondrion BP 6.699e-11
GO:0070585 protein localization to mitochondrion BP 6.699e-11
GO:0072655 establishment of protein localization to... BP 6.699e-11
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0015698 inorganic anion transport BP 4.809e-06
GO:0006820 anion transport BP 2.054e-04
GO:0010167 response to nitrate BP 3.034e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
red illumination +lincomycin		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 247491_at AT5G61880 [Protein Transporter, Pam16] 0.398 -0.029
2 253868_at AT4G27500 PPI1, proton pump interactor 1 0.357 0.073
3 258505_at AT3G06530 [ARM repeat superfamily protein] 0.250 0.040
4 261377_at AT1G18850 unknown 0.245 -0.017
5 247178_at AT5G65205 [NAD(P)-binding Rossmann-fold superfamily protein] 0.240 -0.068
6 251740_at AT3G56070 ROC2, rotamase cyclophilin 2 0.236 -0.055
7 260049_at AT1G29940 NRPA2, nuclear RNA polymerase A2 0.229 0.019
8 259422_at AT1G13810 [Restriction endonuclease, type II-like superfamily protein] 0.227 -0.029
9 267309_at AT2G19385 [zinc ion binding] 0.190 0.031
10 261725_at AT1G76300 SmD3, snRNP core protein SMD3 0.188 -0.054
11 253027_at AT4G38150 [Pentatricopeptide repeat (PPR) superfamily protein] 0.187 -0.043
12 250222_at AT5G14050 [Transducin/WD40 repeat-like superfamily protein] 0.185 0.012
13 256978_at AT3G21110 ATPURC, PUR7, purin 7, PURC, PURIN C 0.178 -0.046
14 258232_at AT3G27750 EMB3123, EMBRYO DEFECTIVE 3123, THA8, Thylakoid Assembly 8 0.178 -0.119
15 261923_at AT1G22380 AtUGT85A3, UDP-glucosyl transferase 85A3, UGT85A3, UDP-glucosyl transferase 85A3 0.174 -0.070
16 265911_at AT2G25670 unknown 0.174 -0.025
17 249901_at AT5G22650 ATHD2, ARABIDOPSIS HISTONE DEACETYLASE 2, ATHD2B, HD2, HISTONE DEACETYLASE 2, HD2B, histone deacetylase 2B, HDA4, HDT02, HDT2 0.172 -0.002
18 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.168 -0.005
19 249528_at AT5G38720 unknown 0.164 0.071
20 267591_at AT2G39705 DVL11, DEVIL 11, RTFL8, ROTUNDIFOLIA like 8 0.163 -0.120
21 265931_at AT2G18520 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.160 -0.023
22 253680_at AT4G29620 [Cytidine/deoxycytidylate deaminase family protein] 0.158 -0.035
23 255749_at AT1G31970 STRS1, STRESS RESPONSE SUPPRESSOR 1 0.155 0.004
24 252137_at AT3G50980 XERO1, dehydrin xero 1 0.155 -0.086
25 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.361 0.013
26 253150_at AT4G35660 unknown -0.264 -0.053
27 262146_at AT1G52580 ATRBL5, RHOMBOID-like protein 5, RBL5, RHOMBOID-like protein 5 -0.241 0.013
28 253943_at AT4G27030 FAD4, FATTY ACID DESATURASE 4, FADA, fatty acid desaturase A -0.207 -0.019
29 266761_at AT2G47130 AtSDR3, SDR3, short-chain dehydrogenase/reductase 2 -0.205 0.039
30 259260_at AT3G11370 [Cysteine/Histidine-rich C1 domain family protein] -0.203 -0.026
31 245004_at ATCG00300 YCF9 -0.201 -0.006
32 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] -0.197 0.276
33 256469_at AT1G32540 LOL1, lsd one like 1 -0.190 -0.077
34 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.176 -0.131
35 260220_at AT1G74650 ATMYB31, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATY13, MYB31, myb domain protein 31 -0.174 -0.014
36 244965_at ATCG00590 ORF31 -0.172 -0.171
37 245412_at AT4G17280 [Auxin-responsive family protein] -0.169 0.072
38 251174_at AT3G63200 PLA IIIB, PLP9, PATATIN-like protein 9 -0.165 -0.091
39 256840_x_at AT3G32000 [gypsy-like retrotransposon family (Athila), has a 5.4e-305 P-value blast match to GB:CAA57397 Athila ORF 1 (Arabidopsis thaliana)] -0.156 0.023
40 256721_at AT2G34150 ATRANGAP2, ATSCAR1, SCAR1, WAVE1, WISKOTT-ALDRICH SYNDROME PROTEIN FAMILY VERPROLIN HOMOLOGOUS PROTEIN 1 -0.151 0.068
41 248673_at AT5G48780 [disease resistance protein (TIR-NBS class)] -0.150 0.024
42 246241_at AT4G37050 AtPLAIVC, phospholipase A IVC, PLA V, PLAIII{beta}, patatin-related phospholipase III beta, PLP4, PATATIN-like protein 4 -0.149 0.035
43 260335_at AT1G74000 SS3, strictosidine synthase 3 -0.146 0.004
44 261178_at AT1G04760 ATVAMP726, vesicle-associated membrane protein 726, VAMP726, vesicle-associated membrane protein 726 -0.146 -0.086
45 259340_at AT3G03870 unknown -0.145 -0.035
46 263574_at AT2G16990 [Major facilitator superfamily protein] -0.144 -0.088
47 253845_at AT4G27980 unknown -0.141 -0.068