4.0:Information of module
dark +lincomycin
In comparison with COL-0-Fe--root help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009218 pyrimidine ribonucleotide metabolic proc... BP 3.367e-05
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 4.318e-05
GO:0006220 pyrimidine nucleotide metabolic process BP 5.500e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0019684 photosynthesis, light reaction BP 1.145e-07
GO:0015979 photosynthesis BP 6.825e-07
GO:0006091 generation of precursor metabolites and ... BP 1.809e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
dark +lincomycin		 Log2 signal ratio
COL-0-Fe--root
1 244921_s_at ATMG01000 ORF114 0.574 0.340
2 249575_at AT5G37670 [HSP20-like chaperones superfamily protein] 0.574 -0.025
3 266154_at AT2G12190 [Cytochrome P450 superfamily protein] 0.431 0.132
4 247616_at AT5G60260 unknown 0.416 0.047
5 267444_at AT2G19180 unknown 0.409 0.075
6 258213_at AT3G17950 unknown 0.403 -0.078
7 257147_at AT3G27270 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] 0.398 0.169
8 257690_at AT3G12830 SAUR72, SMALL AUXIN UPREGULATED 72 0.394 0.145
9 248870_at AT5G46710 [PLATZ transcription factor family protein] 0.363 0.176
10 262552_at AT1G31350 KUF1, KAR-UP F-box 1 0.360 0.165
11 251638_at AT3G57490 [Ribosomal protein S5 family protein] 0.345 0.051
12 258505_at AT3G06530 [ARM repeat superfamily protein] 0.325 0.092
13 252521_at AT3G46380 unknown 0.322 0.052
14 249554_at AT5G38290 [Peptidyl-tRNA hydrolase family protein] 0.320 -0.044
15 246891_at AT5G25490 [Ran BP2/NZF zinc finger-like superfamily protein] 0.320 -0.033
16 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.314 0.222
17 250509_at AT5G09970 CYP78A7, cytochrome P450, family 78, subfamily A, polypeptide 7 0.296 -0.011
18 262925_at AT1G65730 YSL7, YELLOW STRIPE like 7 0.283 0.035
19 247246_at AT5G64620 ATC/VIF2, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2, C/VIF2, cell wall / vacuolar inhibitor of fructosidase 2 0.282 -0.007
20 264692_at AT1G70000 [myb-like transcription factor family protein] 0.280 0.009
21 260203_at AT1G52890 ANAC019, NAC domain containing protein 19, NAC019, NAC domain containing protein 19 0.274 0.053
22 252956_at AT4G38580 ATFP6, farnesylated protein 6, FP6, farnesylated protein 6, HIPP26, HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26 0.268 0.032
23 245316_at AT4G14000 [Putative methyltransferase family protein] 0.263 0.022
24 248336_at AT5G52420 unknown 0.259 0.033
25 256341_at AT1G72040 AtdNK, dNK, deoxyribonucleoside kinase 0.258 0.027
26 245690_at AT5G04230 ATPAL3, PAL3, phenyl alanine ammonia-lyase 3 0.257 0.048
27 259651_at AT1G55280 [Lipase/lipooxygenase, PLAT/LH2 family protein] 0.251 0.019
28 264689_at AT1G09900 [Pentatricopeptide repeat (PPR-like) superfamily protein] 0.248 0.059
29 248623_at AT5G49170 unknown 0.247 -0.005
30 255113_at AT4G08820 [similar to nucleic acid binding / zinc ion binding [Arabidopsis thaliana] (TAIR:AT2G01050.1)] 0.246 0.068
31 250152_at AT5G15120 unknown 0.246 0.044
32 246810_at AT5G27160 unknown 0.242 0.051
33 256890_at AT3G23830 AtGRP4, GR-RBP4, GRP4, glycine-rich RNA-binding protein 4 0.241 0.023
34 255777_at AT1G18630 GR-RBP6, glycine-rich RNA-binding protein 6 0.240 0.049
35 246930_at AT5G25220 KNAT3, KNOTTED1-like homeobox gene 3 0.239 0.059
36 246793_at AT5G27210 Cand8, candidate G-protein Coupled Receptor 8 0.238 0.038
37 263562_at AT2G15420 [myosin heavy chain-related] 0.237 0.010
38 251491_at AT3G59480 [pfkB-like carbohydrate kinase family protein] 0.236 -0.248
39 246584_at AT5G14730 unknown 0.234 0.542
40 258961_at AT3G10580 [Homeodomain-like superfamily protein] 0.232 0.061
41 249849_at AT5G23230 NIC2, nicotinamidase 2 0.231 -0.003
42 245804_at AT1G46696 unknown 0.230 0.008
43 255659_at AT4G00895 [ATPase, F1 complex, OSCP/delta subunit protein] 0.229 0.041
44 258395_at AT3G15500 ANAC055, NAC domain containing protein 55, ATNAC3, NAC domain containing protein 3, NAC055, NAC domain containing protein 55, NAC3, NAC domain containing protein 3 0.222 -0.098
45 253175_at AT4G35050 MSI3, MULTICOPY SUPPRESSOR OF IRA1 3, NFC3, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP C 3 0.221 -0.034
46 258316_at AT3G22660 [rRNA processing protein-related] 0.221 0.029
47 250151_at AT5G14570 ATNRT2.7, high affinity nitrate transporter 2.7, NRT2.7, high affinity nitrate transporter 2.7 0.220 0.109
48 249927_at AT5G19220 ADG2, ADP GLUCOSE PYROPHOSPHORYLASE 2, APL1, ADP glucose pyrophosphorylase large subunit 1 -0.773 -0.123
49 258055_at AT3G16250 NDF4, NDH-dependent cyclic electron flow 1, PnsB3, Photosynthetic NDH subcomplex B 3 -0.641 -0.068
50 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] -0.571 0.004
51 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 -0.492 -0.115
52 255248_at AT4G05180 PSBQ, PHOTOSYSTEM II SUBUNIT Q, PSBQ-2, photosystem II subunit Q-2, PSII-Q -0.491 -0.326
53 256309_at AT1G30380 PSAK, photosystem I subunit K -0.459 -0.218
54 257714_at AT3G27360 H3.1, histone 3.1 -0.455 -0.075
55 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.437 -0.102
56 261605_at AT1G49580 [Calcium-dependent protein kinase (CDPK) family protein] -0.412 -0.049
57 251814_at AT3G54890 LHCA1, photosystem I light harvesting complex gene 1 -0.384 -0.319
58 264794_at AT1G08670 [ENTH/VHS family protein] -0.381 -0.080
59 257595_at AT3G24750 unknown -0.368 -0.256
60 252478_at AT3G46540 [ENTH/VHS family protein] -0.356 -0.018
61 251928_at AT3G53980 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.344 0.018
62 251741_at AT3G56040 UGP3, UDP-glucose pyrophosphorylase 3 -0.327 -0.044
63 262867_at AT1G64960 HEB1, hypersensitive to excess boron 1 -0.322 0.038
64 253738_at AT4G28750 PSAE-1, PSA E1 KNOCKOUT -0.320 -0.235
65 258347_at AT3G17520 [Late embryogenesis abundant protein (LEA) family protein] -0.294 0.067
66 256138_at AT1G48670 [auxin-responsive GH3 family protein] -0.293 -0.083
67 259716_at AT1G60995 unknown -0.283 0.052
68 246496_at AT5G16210 [HEAT repeat-containing protein] -0.280 0.027
69 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 -0.279 0.268
70 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.275 -0.162
71 256880_at AT3G26450 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.269 0.003
72 255044_at AT4G09680 ATCTC1, CTC1, conserved telomere maintenance component 1 -0.269 0.046
73 247910_at AT5G57410 [Afadin/alpha-actinin-binding protein] -0.269 -0.012
74 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase -0.259 0.042
75 248371_at AT5G51810 AT2353, ATGA20OX2, GA20OX2, gibberellin 20 oxidase 2 -0.254 0.024
76 247868_at AT5G57620 AtMYB36, myb domain protein 36, MYB36, myb domain protein 36 -0.252 0.033
77 251658_at AT3G57020 [Calcium-dependent phosphotriesterase superfamily protein] -0.250 -0.105
78 258689_at AT3G07940 [Calcium-dependent ARF-type GTPase activating protein family] -0.245 0.021
79 251914_at AT3G53930 [Protein kinase superfamily protein] -0.239 0.007
80 267361_at AT2G39920 [HAD superfamily, subfamily IIIB acid phosphatase ] -0.235 0.047
81 265053_at AT1G52000 [Mannose-binding lectin superfamily protein] -0.234 -0.042
82 251885_at AT3G54050 HCEF1, high cyclic electron flow 1 -0.230 -0.221
83 263578_at AT2G17020 [F-box/RNI-like superfamily protein] -0.223 -0.019
84 261138_at AT1G19710 [UDP-Glycosyltransferase superfamily protein] -0.221 0.011
85 261951_at AT1G64490 [DEK, chromatin associated protein] -0.220 0.004
86 246997_at AT5G67390 unknown -0.219 -0.022
87 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 -0.217 0.023
88 248151_at AT5G54270 LHCB3, light-harvesting chlorophyll B-binding protein 3, LHCB3*1 -0.216 -0.352
89 257130_at AT3G20210 DELTA-VPE, delta vacuolar processing enzyme, DELTAVPE, DELTA VACUOLAR PROCESSING ENZYME -0.215 0.094
90 257932_at AT3G17040 HCF107, high chlorophyll fluorescent 107 -0.212 -0.149
91 247436_at AT5G62530 ALDH12A1, aldehyde dehydrogenase 12A1, ATP5CDH, ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, P5CDH, DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE -0.210 0.044
92 267512_at AT2G45690 ATPEX16, ARABIDOPSIS PEROXIN 16, PEX16, PEROXIN 16, SSE, SSE1, SHRUNKEN SEED 1 -0.210 0.069
93 264059_at AT2G31305 INH3, INHIBITOR-3 -0.208 0.009