4.0:Information of module
abi4-102 +lincomycin
In comparison with PNO8 3 h  help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 3.026e-05
GO:0006412 translation BP 1.008e-03
GO:0006091 generation of precursor metabolites and ... BP 1.786e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0022613 ribonucleoprotein complex biogenesis BP 1.237e-03
GO:0019932 second-messenger-mediated signaling BP 3.656e-03
GO:0034470 ncRNA processing BP 4.244e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
abi4-102 +lincomycin		 Log2 signal ratio
PNO8 3 h
1 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.847 0.118
2 250979_at AT5G03090 unknown 0.710 -0.071
3 263367_at AT2G20460 [copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.648 -0.053
4 249053_at AT5G44440 [FAD-binding Berberine family protein] 0.578 -0.348
5 249114_at AT5G43800 [copia-like retrotransposon family, has a 0. P-value blast match to gb|AAG52949.1| gag/pol polyprotein (Endovir1-1) (Arabidopsis thaliana) (Ty1_Copia-family)] 0.553 0.026
6 259352_at AT3G05170 [Phosphoglycerate mutase family protein] 0.537 -0.047
7 245766_at AT1G33580 [CACTA-like transposase family (Tnp2/En/Spm), has a 5.5e-96 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.420 0.043
8 263089_at AT2G16000 [copia-like retrotransposon family, has a 2.6e-248 P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)] 0.417 0.081
9 263346_at AT2G05660 [CACTA-like transposase family (Tnp2/En/Spm), has a 0. P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.392 -0.016
10 257551_at AT3G13270 unknown 0.366 -0.024
11 267078_at AT2G40960 [Single-stranded nucleic acid binding R3H protein] 0.330 0.039
12 248509_at AT5G50335 unknown 0.323 0.005
13 245325_at AT4G14130 XTH15, xyloglucan endotransglucosylase/hydrolase 15, XTR7, xyloglucan endotransglycosylase 7 0.317 -0.137
14 266688_at AT2G19660 [Cysteine/Histidine-rich C1 domain family protein] 0.291 -0.094
15 254809_at AT4G12410 SAUR35, SMALL AUXIN UPREGULATED RNA 35 0.266 -0.103
16 261768_at AT1G15550 ATGA3OX1, ARABIDOPSIS THALIANA GIBBERELLIN 3 BETA-HYDROXYLASE 1, GA3OX1, gibberellin 3-oxidase 1, GA4, GA REQUIRING 4 0.253 -0.015
17 261942_at AT1G22590 AGL87, AGAMOUS-like 87 0.251 -0.128
18 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.250 -0.100
19 246888_at AT5G26270 unknown 0.249 -0.127
20 253707_at AT4G29200 [Beta-galactosidase related protein] 0.222 -0.021
21 264511_at AT1G09350 AtGolS3, galactinol synthase 3, GolS3, galactinol synthase 3 0.212 0.034
22 248890_at AT5G46270 [Disease resistance protein (TIR-NBS-LRR class) family] 0.175 -0.009
23 247774_at AT5G58660 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.165 0.009
24 252865_at AT4G39753 [Galactose oxidase/kelch repeat superfamily protein] 0.163 -0.043
25 244982_at ATCG00780 RPL14, ribosomal protein L14 0.162 -0.025
26 249456_at AT5G39410 [Saccharopine dehydrogenase ] 0.162 0.019
27 266321_at AT2G46660 CYP78A6, cytochrome P450, family 78, subfamily A, polypeptide 6, EOD3, enhancer of da1-1 0.161 -0.028
28 257284_at AT3G29650 [CACTA-like transposase family (Tnp1/En/Spm), has a 5.1e-81 P-value blast match to ref|NP_189784.1| TNP1-related protein (Arabidopsis thaliana) (CACTA-element)] 0.157 -0.069
29 257144_at AT3G27300 G6PD5, glucose-6-phosphate dehydrogenase 5 -0.678 -0.018
30 248549_at AT5G50310 [Galactose oxidase/kelch repeat superfamily protein] -0.457 -0.019
31 266118_at AT2G02130 LCR68, low-molecular-weight cysteine-rich 68, PDF2.3 -0.424 0.012
32 259252_at AT3G07610 IBM1, increase in bonsai methylation 1 -0.387 -0.055
33 261222_at AT1G20120 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.379 -0.040
34 263739_at AT2G21320 BBX18, B-box domain protein 18 -0.272 -0.042
35 255807_at AT4G10270 [Wound-responsive family protein] -0.264 0.181
36 263380_at AT2G40200 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.235 -0.019
37 263826_at AT2G40410 AtCaN2, Ca2+-dependent nuclease, CAN2, calcium dependent nuclease 2 -0.231 0.010
38 254998_at AT4G09760 [Protein kinase superfamily protein] -0.230 0.027
39 261441_at AT1G28470 ANAC010, NAC domain containing protein 10, NAC010, NAC domain containing protein 10, SND3, SECONDARY WALL-ASSOCIATED NAC DOMAIN PROTEIN 3 -0.229 0.037
40 253051_at AT4G37490 CYC1, CYCLIN 1, CYCB1, CYCB1;1, CYCLIN B1;1 -0.226 -0.046
41 263387_at AT2G40160 TBL30 -0.202 0.008
42 262261_at AT1G70895 CLE17, CLAVATA3/ESR-RELATED 17 -0.174 -0.012
43 255503_at AT4G02420 LecRK-IV.4, L-type lectin receptor kinase IV.4 -0.174 -0.010
44 246200_at AT4G37240 unknown -0.170 -0.130
45 267344_at AT2G44230 unknown -0.168 -0.146
46 258438_at AT3G17230 [invertase/pectin methylesterase inhibitor family protein] -0.168 0.019
47 267010_at AT2G39250 SNZ, SCHNARCHZAPFEN -0.160 -0.106
48 264528_at AT1G30810 JMJ18, Jumonji domain-containing protein 18 -0.156 -0.041
49 253930_at AT4G26740 AtCLO1, ATPXG1, ARABIDOPSIS THALIANA PEROXYGENASE 1, ATS1, seed gene 1, CLO1, CALEOSIN1 -0.153 0.057
50 251612_at AT3G57950 unknown -0.145 0.015
51 260128_at AT1G36310 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.139 -0.043
52 254123_at AT4G24640 APPB1 -0.138 -0.054
53 261930_at AT1G22440 [Zinc-binding alcohol dehydrogenase family protein] -0.138 -0.010
54 263105_at AT2G05320 [beta-1,2-N-acetylglucosaminyltransferase II] -0.133 -0.045
55 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] -0.132 -0.011