4.0:Information of module
syd-2
In comparison with CCA1-ox 6am non-polysomal help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044237 cellular metabolic process BP 7.086e-06
GO:0071704 organic substance metabolic process BP 1.397e-05
GO:0008152 metabolic process BP 1.815e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010817 regulation of hormone levels BP 1.324e-08
GO:0005975 carbohydrate metabolic process BP 2.392e-08
GO:0016126 sterol biosynthetic process BP 3.313e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
syd-2		 Log2 signal ratio
CCA1-ox 6am non-polysomal
1 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B 0.804 0.014
2 257365_x_at AT2G26020 PDF1.2b, plant defensin 1.2b 0.510 0.132
3 250942_at AT5G03350 [Legume lectin family protein] 0.410 0.021
4 256780_at AT3G13640 ABCE1, ATP-binding cassette E1, ATRLI1, RNAse l inhibitor protein 1, RLI1, RNAse l inhibitor protein 1 0.408 -0.021
5 257518_at AT3G03880 unknown 0.404 0.284
6 254371_at AT4G21760 BGLU47, beta-glucosidase 47 0.357 -0.061
7 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 0.350 -0.248
8 251668_at AT3G57010 [Calcium-dependent phosphotriesterase superfamily protein] 0.346 0.078
9 266719_at AT2G46830 AtCCA1, CCA1, circadian clock associated 1 0.335 0.013
10 259199_at AT3G08980 [Peptidase S24/S26A/S26B/S26C family protein] 0.332 0.072
11 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 0.331 0.061
12 260170_at AT1G71890 ATSUC5, SUCROSE-PROTON SYMPORTER 5, SUC5 0.326 0.167
13 248315_at AT5G52630 MEF1, mitochondrial RNA editing factor 1 0.301 -0.034
14 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.289 0.025
15 247691_at AT5G59720 HSP18.2, heat shock protein 18.2 0.286 -0.079
16 262705_at AT1G16260 [Wall-associated kinase family protein] 0.272 0.032
17 255422_at AT4G03270 CYCD6;1, Cyclin D6;1 0.249 0.016
18 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.248 0.018
19 248873_at AT5G46450 [Disease resistance protein (TIR-NBS-LRR class) family] 0.248 -0.020
20 260416_at AT1G69670 ATCUL3B, ARABIDOPSIS THALIANA CULLIN 3B, CUL3B, cullin 3B 0.247 0.212
21 263046_at AT2G05380 GRP3S, glycine-rich protein 3 short isoform 0.247 -0.158
22 246786_at AT5G27410 [D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein] 0.247 0.146
23 257206_at AT3G16530 [Legume lectin family protein] 0.241 0.098
24 249895_at AT5G22500 FAR1, fatty acid reductase 1 0.235 0.238
25 245193_at AT1G67810 SUFE2, sulfur E2 0.233 0.056
26 262760_at AT1G10770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.230 -0.007
27 259040_at AT3G09270 ATGSTU8, glutathione S-transferase TAU 8, GSTU8, glutathione S-transferase TAU 8 0.223 -0.175
28 254451_at AT4G21090 ATMFDX2, ARABIDOPSIS MITOCHONDRIAL FERREDOXIN 2, MFDX2, MITOCHONDRIAL FERREDOXIN 2 0.222 -0.138
29 264625_at AT1G09020 ATSNF4, SNF4, homolog of yeast sucrose nonfermenting 4 0.218 -0.057
30 260148_at AT1G52800 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.215 0.096
31 250066_at AT5G17930 [MIF4G domain-containing protein / MA3 domain-containing protein] 0.209 0.166
32 262461_at AT1G50360 ATVIIIA, MYOSIN VIII A, VIIIA 0.204 -0.110
33 252188_at AT3G50860 [Clathrin adaptor complex small chain family protein] 0.202 -0.149
34 249321_at AT5G40920 [pseudogene] 0.202 -0.230
35 246344_at AT3G56730 [Putative endonuclease or glycosyl hydrolase] 0.199 -0.086
36 260655_at AT1G19320 [Pathogenesis-related thaumatin superfamily protein] 0.197 -0.125
37 254924_at AT4G11330 ATMPK5, MAP kinase 5, MPK5, MAP kinase 5 0.192 0.079
38 261382_at AT1G05470 CVP2, COTYLEDON VASCULAR PATTERN 2 0.186 -0.143
39 263322_at AT2G04270 RNE, RNase E, RNEE/G, RNAse E/G-like 0.183 -0.040
40 255036_at AT4G09560 [Protease-associated (PA) RING/U-box zinc finger family protein] 0.183 -0.028
41 253343_at AT4G33540 [metallo-beta-lactamase family protein] 0.178 0.074
42 247436_at AT5G62530 ALDH12A1, aldehyde dehydrogenase 12A1, ATP5CDH, ARABIDOPSIS THALIANA DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE, P5CDH, DELTA1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 0.175 0.575
43 247814_at AT5G58310 ATMES18, ARABIDOPSIS THALIANA METHYL ESTERASE 18, MES18, methyl esterase 18 0.168 -0.166
44 247297_at AT5G64100 [Peroxidase superfamily protein] 0.165 -0.237
45 255763_at AT1G16730 unknown 0.165 0.000
46 253553_at AT4G31050 LIP2, octanoyl- transferase 0.164 0.067
47 250636_at AT5G07520 ATGRP-8, ATGRP18, GRP18, glycine-rich protein 18 0.162 0.022
48 252736_at AT3G43210 ATNACK2, ARABIDOPSIS NPK1-ACTIVATING KINESIN 2, NACK2, NPK1-ACTIVATING KINESIN 2, TES, TETRASPORE 0.161 0.320
49 252336_at AT3G48880 [RNI-like superfamily protein] 0.161 0.101
50 246282_at AT4G36580 [AAA-type ATPase family protein] 0.161 0.054
51 247426_at AT5G62570 CBP60a, calmodulin-binding protein 60a 0.156 -0.041
52 247335_at AT5G63630 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.156 0.120
53 256621_at AT3G24450 [Heavy metal transport/detoxification superfamily protein ] 0.155 0.030
54 267317_at AT2G34700 [Pollen Ole e 1 allergen and extensin family protein] 0.153 -0.299
55 248337_at AT5G52310 COR78, COLD REGULATED 78, LTI140, LTI78, LOW-TEMPERATURE-INDUCED 78, RD29A, RESPONSIVE TO DESSICATION 29A 0.153 0.015
56 267305_at AT2G30070 ATKT1, potassium transporter 1, ATKT1P, ATKUP1, KT1, potassium transporter 1, KUP1, POTASSIUM UPTAKE TRANSPORTER 1 0.151 0.011
57 251024_at AT5G02180 [Transmembrane amino acid transporter family protein] 0.147 -0.056
58 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.748 -0.003
59 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.737 0.148
60 259692_at AT1G63080 [Pentatricopeptide repeat (PPR) superfamily protein] -0.693 0.169
61 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 -0.522 0.200
62 249125_at AT5G43450 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.520 -0.072
63 260077_at AT1G73620 [Pathogenesis-related thaumatin superfamily protein] -0.460 -0.136
64 266007_at AT2G37380 MAKR3, MEMBRANE-ASSOCIATED KINASE REGULATOR 3 -0.447 -0.003
65 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.438 0.115
66 262682_at AT1G75900 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.386 0.016
67 260686_at AT1G17620 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.381 0.008
68 253579_at AT4G30610 BRS1, BRI1 SUPPRESSOR 1, SCPL24, SERINE CARBOXYPEPTIDASE 24 PRECURSOR -0.381 -0.219
69 266383_at AT2G14580 ATPRB1, basic pathogenesis-related protein 1, PRB1, basic pathogenesis-related protein 1 -0.378 -0.081
70 247162_at AT5G65730 XTH6, xyloglucan endotransglucosylase/hydrolase 6 -0.368 -0.040
71 262092_at AT1G56150 SAUR71, SMALL AUXIN UPREGULATED 71 -0.364 -0.193
72 265573_at AT2G28200 [C2H2-type zinc finger family protein] -0.360 -0.009
73 265441_at AT2G20870 [cell wall protein precursor, putative] -0.358 -0.039
74 262615_at AT1G13950 ATELF5A-1, EUKARYOTIC ELONGATION FACTOR 5A-1, EIF-5A, EIF5A, EUKARYOTIC ELONGATION FACTOR 5A, ELF5A-1, eukaryotic elongation factor 5A-1 -0.341 -0.103
75 248622_at AT5G49360 ATBXL1, BETA-XYLOSIDASE 1, BXL1, beta-xylosidase 1 -0.340 0.333
76 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 -0.320 0.167
77 254697_at AT4G17970 ALMT12, aluminum-activated, malate transporter 12, ATALMT12, QUAC1, quick-activating anion channel 1 -0.315 -0.265
78 247954_at AT5G56870 BGAL4, beta-galactosidase 4 -0.307 -0.065
79 266600_at AT2G46070 ATMPK12, MAPK12, MPK12, mitogen-activated protein kinase 12 -0.304 -0.089
80 264195_at AT1G22690 [Gibberellin-regulated family protein] -0.297 -0.008
81 251181_at AT3G62820 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.289 0.030
82 262947_at AT1G75750 GASA1, GAST1 protein homolog 1 -0.282 -0.054
83 253736_at AT4G28780 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.275 -0.014
84 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.274 0.054
85 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 -0.272 0.039
86 252583_at AT3G45540 [RING/U-box protein with C6HC-type zinc finger] -0.270 0.248
87 263467_at AT2G31730 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.264 -0.071
88 250335_at AT5G11650 [alpha/beta-Hydrolases superfamily protein] -0.263 0.038
89 250155_at AT5G15160 BHLH134, BASIC HELIX-LOOP-HELIX PROTEIN 134, BNQ2, BANQUO 2 -0.258 -0.015
90 253253_at AT4G34750 SAUR49, SMALL AUXIN UPREGULATED RNA 49 -0.257 0.063
91 255186_at AT4G07750 [CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-168 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] -0.257 0.116
92 264590_at AT2G17710 unknown -0.256 0.032
93 265334_at AT2G18370 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.255 -0.034
94 253666_at AT4G30270 MERI-5, MERISTEM 5, MERI5B, meristem-5, SEN4, SENESCENCE 4, XTH24, xyloglucan endotransglucosylase/hydrolase 24 -0.254 0.129
95 258189_at AT3G17860 JAI3, JASMONATE-INSENSITIVE 3, JAZ3, jasmonate-zim-domain protein 3, TIFY6B -0.251 0.104
96 259235_at AT3G11600 unknown -0.249 -0.062
97 263108_at AT1G65240 [Eukaryotic aspartyl protease family protein] -0.247 0.030
98 265771_at AT2G48030 [DNAse I-like superfamily protein] -0.246 0.212
99 267121_at AT2G23540 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.245 0.004
100 264319_at AT1G04110 AtSDD1, SDD1, STOMATAL DENSITY AND DISTRIBUTION 1 -0.244 0.003
101 245672_at AT1G56710 [Pectin lyase-like superfamily protein] -0.241 0.103
102 256469_at AT1G32540 LOL1, lsd one like 1 -0.241 -0.079
103 255745_at AT1G32030 [FUNCTIONS IN: DNA binding] -0.230 -0.117
104 266352_at AT2G01610 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.230 0.001
105 260083_at AT1G63220 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.229 -0.048
106 261981_at AT1G33811 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.227 0.095
107 265922_at AT2G18480 [Major facilitator superfamily protein] -0.219 0.057
108 249037_at AT5G44130 FLA13, FASCICLIN-like arabinogalactan protein 13 precursor -0.218 -0.123
109 245196_at AT1G67750 [Pectate lyase family protein] -0.218 -0.063
110 264512_at AT1G09575 unknown -0.217 -0.106
111 264909_at AT2G17300 unknown -0.215 0.109
112 251996_at AT3G52840 BGAL2, beta-galactosidase 2 -0.214 -0.107
113 253934_at AT4G26830 [O-Glycosyl hydrolases family 17 protein] -0.212 0.201