4.0:Information of module
WT polysome
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 1.006e-21
GO:0006090 pyruvate metabolic process BP 4.996e-18
GO:0044711 single-organism biosynthetic process BP 7.167e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048193 Golgi vesicle transport BP 1.501e-09
GO:0016192 vesicle-mediated transport BP 3.930e-07
GO:0046907 intracellular transport BP 3.321e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT polysome		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 0.692 -0.900
2 267645_at AT2G32860 BGLU33, beta glucosidase 33 0.673 -0.750
3 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.658 0.364
4 245007_at ATCG00350 PSAA 0.622 -1.199
5 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.565 -0.574
6 257822_at AT3G25230 ATFKBP62, FKBP62, FK506 BINDING PROTEIN 62, ROF1, rotamase FKBP 1 0.530 1.010
7 262086_at AT1G56050 [GTP-binding protein-related] 0.529 0.335
8 260343_at AT1G69200 FLN2, fructokinase-like 2 0.508 1.129
9 245076_at AT2G23170 GH3.3 0.487 -0.319
10 247392_at AT5G63570 GSA1, glutamate-1-semialdehyde-2,1-aminomutase 0.476 0.413
11 264673_at AT1G09795 ATATP-PRT2, ATP phosphoribosyl transferase 2, ATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B 0.471 0.361
12 266804_at AT2G29960 ATCYP5, ARABIDOPSIS THALIANA CYCLOPHILIN 5, CYP19-4, CYCLOPHILIN 19-4, CYP5, cyclophilin 5 0.453 0.480
13 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 0.451 0.789
14 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.438 0.185
15 251075_at AT5G01890 PXC2, PXY/TDR-correlated 2 0.426 -0.253
16 262800_at AT1G20960 emb1507, embryo defective 1507 0.423 0.655
17 265389_at AT2G20690 [lumazine-binding family protein] 0.402 0.583
18 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 0.400 0.882
19 249874_at AT5G23070 AtTK1b, TK1b, thymidine kinase 1b 0.393 1.463
20 266055_at AT2G40650 [PRP38 family protein] 0.391 0.739
21 253925_at AT4G26690 GDPDL3, Glycerophosphodiester phosphodiesterase (GDPD) like 3, GPDL2, GLYCEROPHOSPHODIESTERASE-LIKE 2, MRH5, MUTANT ROOT HAIR 5, SHV3, SHAVEN 3 0.388 0.651
22 248070_at AT5G55660 [DEK domain-containing chromatin associated protein] 0.385 -0.515
23 257759_at AT3G23070 ATCFM3A, CFM3A, CRM family member 3A 0.379 -0.108
24 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.371 0.678
25 260047_at AT1G73740 [UDP-Glycosyltransferase superfamily protein] 0.364 -0.433
26 248032_at AT5G55860 unknown 0.362 0.594
27 262706_at AT1G16280 AtRH36, Arabidopsis thaliana RNA helicase 36, RH36, RNA helicase 36, SWA3, SLOW WALKER 3 0.361 1.423
28 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.357 0.663
29 246157_at AT5G20080 [FAD/NAD(P)-binding oxidoreductase] 0.355 0.313
30 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 0.350 0.811
31 256675_at AT3G52170 [DNA binding] 0.350 0.026
32 248454_at AT5G51350 MOL1, MORE LATERAL GROWTH1 0.349 0.292
33 260000_at AT1G68060 ATMAP70-1, microtubule-associated proteins 70-1, MAP70-1, microtubule-associated proteins 70-1 0.344 0.485
34 261500_at AT1G28400 unknown 0.339 0.335
35 262504_at AT1G21750 ATPDI5, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDIL1-1, PDI-like 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5, PDIL1-1, PDI-like 1-1 0.338 1.250
36 264443_at AT1G27385 unknown 0.337 1.242
37 245002_at ATCG00270 PSBD, photosystem II reaction center protein D 0.336 -0.964
38 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.334 1.328
39 248552_at AT5G50250 CP31B, chloroplast RNA-binding protein 31B 0.333 0.648
40 260028_at AT1G29980 unknown 0.330 0.382
41 251920_at AT3G53900 PYRR, PYRIMIDINE R, UPP, uracil phosphoribosyltransferase 0.328 1.029
42 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.327 0.371
43 251948_at AT3G53580 [diaminopimelate epimerase family protein] 0.327 0.992
44 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.325 0.713
45 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 0.321 -0.035
46 256868_at AT3G26400 EIF4B1, eukaryotic translation initiation factor 4B1 0.320 -0.306
47 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.315 0.493
48 253308_at AT4G33680 AGD2, ABERRANT GROWTH AND DEATH 2 0.313 0.152
49 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] 0.310 0.759
50 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 0.309 0.820
51 250502_at AT5G09590 HSC70-5, HEAT SHOCK COGNATE, MTHSC70-2, mitochondrial HSO70 2 0.308 0.123
52 264611_at AT1G04680 [Pectin lyase-like superfamily protein] 0.307 0.047
53 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein 0.306 0.562
54 250324_at AT5G12040 [Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein] 0.304 0.436
55 264386_at AT1G12000 [Phosphofructokinase family protein] 0.304 1.319
56 255714_at AT4G00300 [fringe-related protein] 0.302 0.521
57 266950_at AT2G18910 [hydroxyproline-rich glycoprotein family protein] 0.298 0.335
58 263250_at AT2G31390 [pfkB-like carbohydrate kinase family protein] 0.294 0.264
59 251989_at AT3G53110 LOS4, LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4 0.294 1.443
60 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.289 0.016
61 264568_at AT1G05150 [Calcium-binding tetratricopeptide family protein] 0.287 0.932
62 261498_at AT1G28440 HSL1, HAESA-like 1 0.287 -0.092
63 249863_at AT5G22950 VPS24.1 0.286 -0.216
64 263867_at AT2G36830 GAMMA-TIP, gamma tonoplast intrinsic protein, GAMMA-TIP1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, TIP1;1, TONOPLAST INTRINSIC PROTEIN 1;1 0.281 0.537
65 257033_at AT3G19170 ATPREP1, presequence protease 1, ATZNMP, PREP1, presequence protease 1 0.281 1.485
66 249380_at AT5G40370 GRXC2, glutaredoxin C2 0.279 1.088
67 263432_at AT2G22230 [Thioesterase superfamily protein] 0.278 1.660
68 261602_at AT1G49630 ATPREP2, presequence protease 2, PREP2, presequence protease 2 0.277 0.732
69 263278_at AT2G14120 DRP3B, dynamin related protein 0.277 0.050
70 263156_at AT1G54030 ERMO3, ENDOPLASMIC RETICULUM MORPHOLOGY 3, GOLD36, GOLGI DEFECTS 36, MVP1, MODIFIED VACUOLE PHENOTYPE 1, NUC, NUCLEAR CAGE 0.275 0.523
71 245164_at AT2G33210 HSP60-2, heat shock protein 60-2 0.272 1.073
72 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.270 0.824
73 261190_at AT1G32990 PRPL11, plastid ribosomal protein l11 0.269 0.528
74 248105_at AT5G55280 ATFTSZ1-1, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, CPFTSZ, CHLOROPLAST FTSZ, FTSZ1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 0.269 1.229
75 248721_at AT5G47780 GAUT4, galacturonosyltransferase 4 0.268 0.324
76 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C 0.268 1.061
77 250625_at AT5G07340 [Calreticulin family protein] 0.267 1.005
78 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.266 1.083
79 246946_at AT5G25070 unknown 0.265 0.861
80 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 0.263 0.988
81 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 0.263 0.926
82 257937_at AT3G19810 unknown 0.262 1.021
83 245864_at AT1G58070 unknown 0.262 -0.163
84 258966_at AT3G10690 GYRA, DNA GYRASE A 0.261 0.490
85 257741_at AT3G27340 unknown -0.989 0.565
86 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.827 0.924
87 257334_at ATMG01370 ORF111D -0.756 -0.262
88 264166_at AT1G65370 [TRAF-like family protein] -0.691 -0.824
89 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.617 0.343
90 249006_at AT5G44660 unknown -0.609 0.462
91 267397_at AT1G76170 [2-thiocytidine tRNA biosynthesis protein, TtcA] -0.600 0.486
92 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.597 1.068
93 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.584 -0.165
94 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 -0.569 0.819
95 244903_at ATMG00660 ORF149 -0.561 0.112
96 255232_at AT4G05330 AGD13, ARF-GAP domain 13 -0.557 -0.950
97 260103_at AT1G35430 unknown -0.553 -0.355
98 244974_at ATCG00700 PSBN, photosystem II reaction center protein N -0.536 -0.066
99 253422_at AT4G32240 unknown -0.513 0.064
100 248802_at AT5G47435 [formyltetrahydrofolate deformylase, putative] -0.491 0.375
101 246957_at AT5G24670 EMB2820, EMBRYO DEFECTIVE 2820, TAD3, tRNA adenosine deaminase 3 -0.491 1.133
102 261969_at AT1G65950 [Protein kinase superfamily protein] -0.486 0.614
103 265451_at AT2G46490 unknown -0.481 0.551
104 248016_at AT5G56380 [F-box/RNI-like/FBD-like domains-containing protein] -0.481 -0.039
105 249824_at AT5G23380 unknown -0.474 1.077
106 244950_at ATMG00160 COX2, cytochrome oxidase 2 -0.472 -0.031
107 258623_at AT3G02790 MBS1, METHYLENE BLUE SENSITIVITY 1 -0.471 1.029
108 254362_at AT4G22160 unknown -0.471 0.111
109 255682_at AT4G00560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.470 0.846
110 248509_at AT5G50335 unknown -0.469 -0.376
111 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] -0.459 0.620
112 246962_s_at AT5G24800 ATBZIP9, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, BZIP9, basic leucine zipper 9, BZO2H2, BASIC LEUCINE ZIPPER O2 HOMOLOG 2 -0.459 0.203
113 265847_at AT2G35750 unknown -0.459 1.298
114 258124_at AT3G18215 unknown -0.458 -0.004
115 255926_at AT1G22190 RAP2.4, related to AP2 4 -0.458 0.117
116 247735_at AT5G59440 ATTMPK.1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, ATTMPK.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ZEU1, ZEUS1 -0.454 0.837
117 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 -0.454 1.008
118 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.452 -0.629
119 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.452 0.442
120 266811_at AT2G44850 unknown -0.447 -1.023
121 250018_at AT5G18150 [Methyltransferase-related protein] -0.447 0.102
122 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 -0.438 -0.556
123 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] -0.438 0.184
124 250148_at AT5G14530 [Transducin/WD40 repeat-like superfamily protein] -0.435 -0.067
125 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.435 -0.323
126 259515_at AT1G20430 unknown -0.434 0.830
127 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 -0.434 -0.572
128 248905_at AT5G46250 AtLARP6a, LARP6a, La related protein 6a -0.418 -0.254
129 256302_at AT1G69526 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.416 0.936
130 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.414 0.668
131 258424_at AT3G16750 unknown -0.411 -0.027
132 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.405 0.283
133 247979_at AT5G56750 NDL1, N-MYC downregulated-like 1 -0.399 -0.356
134 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 -0.399 0.707
135 249159_at AT5G43460 [HR-like lesion-inducing protein-related] -0.398 0.893
136 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.397 -0.607
137 262599_at AT1G15350 unknown -0.395 0.263
138 248585_at AT5G49640 unknown -0.394 -1.352
139 247742_at AT5G58980 [Neutral/alkaline non-lysosomal ceramidase] -0.393 -0.547
140 251403_at AT3G60300 [RWD domain-containing protein] -0.392 0.516
141 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.390 -0.408
142 253672_at AT4G29820 ATCFIM-25, ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, CFIM-25, homolog of CFIM-25 -0.390 -0.980
143 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.387 -0.914
144 261559_at AT1G01780 PLIM2b, PLIM2b -0.384 -0.557
145 250175_at AT5G14390 [alpha/beta-Hydrolases superfamily protein] -0.382 0.496
146 247106_at AT5G66240 [Transducin/WD40 repeat-like superfamily protein] -0.380 0.849
147 250128_at AT5G16540 ZFN3, zinc finger nuclease 3 -0.380 -0.551
148 265824_at AT2G35650 ATCSLA07, cellulose synthase like, ATCSLA7, CSLA07, CSLA07, cellulose synthase like, CSLA7, CELLULOSE SYNTHASE LIKE A7 -0.376 -0.346
149 263243_at AT2G31350 GLX2-5, glyoxalase 2-5 -0.369 0.677
150 265101_at AT1G30880 unknown -0.368 0.605
151 246888_at AT5G26270 unknown -0.367 0.325
152 255307_at AT4G04900 RIC10, ROP-interactive CRIB motif-containing protein 10 -0.365 -0.301
153 264271_at AT1G60270 BGLU6, beta glucosidase 6 -0.363 -0.728
154 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 -0.362 0.604
155 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.358 0.625
156 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.356 -1.145
157 261030_at AT1G17410 [Nucleoside diphosphate kinase family protein] -0.353 0.045
158 250586_at AT5G07630 [lipid transporters] -0.351 -0.066
159 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L -0.350 -0.334
160 267214_at AT2G43970 AtLARP6b, LARP6b, La related protein 6b -0.344 0.117
161 264586_at AT1G05160 ATKAO1, CYP88A3, cytochrome P450, family 88, subfamily A, polypeptide 3, KAO1, ENT-KAURENOIC ACID OXYDASE 1 -0.342 0.134
162 253462_at AT4G32150 ATVAMP711, vesicle-associated membrane protein 711, VAMP711, vesicle-associated membrane protein 711 -0.341 -0.013
163 261140_at AT1G19680 [RING/U-box superfamily protein] -0.341 0.170
164 251100_at AT5G01670 [NAD(P)-linked oxidoreductase superfamily protein] -0.340 0.682
165 252426_at AT3G47630 unknown -0.339 0.095
166 247883_at AT5G57790 unknown -0.339 -0.660
167 260307_at AT1G70620 [cyclin-related] -0.336 1.343