4.0:Information of module
WT polysome
In comparison with WT light help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0044281 small molecule metabolic process BP 1.006e-21
GO:0006090 pyruvate metabolic process BP 4.996e-18
GO:0044711 single-organism biosynthetic process BP 7.167e-15
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048193 Golgi vesicle transport BP 1.501e-09
GO:0016192 vesicle-mediated transport BP 3.930e-07
GO:0046907 intracellular transport BP 3.321e-06
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
WT polysome		 Log2 signal ratio
WT light
1 266353_at AT2G01520 MLP328, MLP-like protein 328, ZCE1, (Zusammen-CA)-enhanced 1 0.692 0.071
2 267645_at AT2G32860 BGLU33, beta glucosidase 33 0.673 0.637
3 259757_at AT1G77510 ATPDI6, PROTEIN DISULFIDE ISOMERASE 6, ATPDIL1-2, PDI-like 1-2, PDI6, PROTEIN DISULFIDE ISOMERASE 6, PDIL1-2, PDI-like 1-2 0.658 0.108
4 245007_at ATCG00350 PSAA 0.622 0.291
5 248075_at AT5G55740 CRR21, chlororespiratory reduction 21 0.565 0.489
6 257822_at AT3G25230 ATFKBP62, FKBP62, FK506 BINDING PROTEIN 62, ROF1, rotamase FKBP 1 0.530 0.199
7 262086_at AT1G56050 [GTP-binding protein-related] 0.529 0.630
8 260343_at AT1G69200 FLN2, fructokinase-like 2 0.508 0.621
9 245076_at AT2G23170 GH3.3 0.487 0.484
10 247392_at AT5G63570 GSA1, glutamate-1-semialdehyde-2,1-aminomutase 0.476 0.273
11 264673_at AT1G09795 ATATP-PRT2, ATP phosphoribosyl transferase 2, ATP-PRT2, ATP phosphoribosyl transferase 2, HISN1B 0.471 0.421
12 266804_at AT2G29960 ATCYP5, ARABIDOPSIS THALIANA CYCLOPHILIN 5, CYP19-4, CYCLOPHILIN 19-4, CYP5, cyclophilin 5 0.453 0.002
13 262796_at AT1G20850 XCP2, xylem cysteine peptidase 2 0.451 -0.048
14 264698_at AT1G70200 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.438 0.382
15 251075_at AT5G01890 PXC2, PXY/TDR-correlated 2 0.426 -0.030
16 262800_at AT1G20960 emb1507, embryo defective 1507 0.423 -0.013
17 265389_at AT2G20690 [lumazine-binding family protein] 0.402 0.404
18 266957_at AT2G34640 HMR, HEMERA, PTAC12, plastid transcriptionally active 12, TAC12 0.400 0.261
19 249874_at AT5G23070 AtTK1b, TK1b, thymidine kinase 1b 0.393 0.160
20 266055_at AT2G40650 [PRP38 family protein] 0.391 0.082
21 253925_at AT4G26690 GDPDL3, Glycerophosphodiester phosphodiesterase (GDPD) like 3, GPDL2, GLYCEROPHOSPHODIESTERASE-LIKE 2, MRH5, MUTANT ROOT HAIR 5, SHV3, SHAVEN 3 0.388 0.064
22 248070_at AT5G55660 [DEK domain-containing chromatin associated protein] 0.385 0.137
23 257759_at AT3G23070 ATCFM3A, CFM3A, CRM family member 3A 0.379 0.436
24 257730_at AT3G18420 [Protein prenylyltransferase superfamily protein] 0.371 0.349
25 260047_at AT1G73740 [UDP-Glycosyltransferase superfamily protein] 0.364 0.025
26 248032_at AT5G55860 unknown 0.362 0.087
27 262706_at AT1G16280 AtRH36, Arabidopsis thaliana RNA helicase 36, RH36, RNA helicase 36, SWA3, SLOW WALKER 3 0.361 0.148
28 264851_at AT2G17290 ATCDPK3, ARABIDOPSIS THALIANA CALMODULIN-DOMAIN PROTEIN KINASE 3, ATCPK6, ARABIDOPSIS THALIANA CALCIUM-DEPENDENT PROTEIN KINASE 6, CPK6, calcium dependent protein kinase 6 0.357 -0.134
29 246157_at AT5G20080 [FAD/NAD(P)-binding oxidoreductase] 0.355 0.145
30 254515_at AT4G20270 BAM3, BARELY ANY MERISTEM 3 0.350 -0.212
31 256675_at AT3G52170 [DNA binding] 0.350 0.323
32 248454_at AT5G51350 MOL1, MORE LATERAL GROWTH1 0.349 -0.041
33 260000_at AT1G68060 ATMAP70-1, microtubule-associated proteins 70-1, MAP70-1, microtubule-associated proteins 70-1 0.344 0.225
34 261500_at AT1G28400 unknown 0.339 -0.039
35 262504_at AT1G21750 ATPDI5, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, ATPDIL1-1, PDI-like 1-1, PDI5, PROTEIN DISULFIDE ISOMERASE 5, PDIL1-1, PDI-like 1-1 0.338 0.139
36 264443_at AT1G27385 unknown 0.337 0.194
37 245002_at ATCG00270 PSBD, photosystem II reaction center protein D 0.336 0.143
38 257066_at AT3G18280 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.334 -0.318
39 248552_at AT5G50250 CP31B, chloroplast RNA-binding protein 31B 0.333 0.303
40 260028_at AT1G29980 unknown 0.330 0.034
41 251920_at AT3G53900 PYRR, PYRIMIDINE R, UPP, uracil phosphoribosyltransferase 0.328 0.421
42 251899_at AT3G54400 [Eukaryotic aspartyl protease family protein] 0.327 0.104
43 251948_at AT3G53580 [diaminopimelate epimerase family protein] 0.327 0.044
44 262880_at AT1G64880 [Ribosomal protein S5 family protein] 0.325 0.096
45 257949_at AT3G21750 UGT71B1, UDP-glucosyl transferase 71B1 0.321 0.343
46 256868_at AT3G26400 EIF4B1, eukaryotic translation initiation factor 4B1 0.320 0.085
47 260565_at AT2G43800 [Actin-binding FH2 (formin homology 2) family protein] 0.315 0.174
48 253308_at AT4G33680 AGD2, ABERRANT GROWTH AND DEATH 2 0.313 0.275
49 261055_at AT1G01300 [Eukaryotic aspartyl protease family protein] 0.310 -0.015
50 266221_at AT2G28760 UXS6, UDP-XYL synthase 6 0.309 -0.220
51 250502_at AT5G09590 HSC70-5, HEAT SHOCK COGNATE, MTHSC70-2, mitochondrial HSO70 2 0.308 0.064
52 264611_at AT1G04680 [Pectin lyase-like superfamily protein] 0.307 -0.008
53 267481_at AT2G02780 Leucine-rich repeat protein kinase family protein 0.306 0.152
54 250324_at AT5G12040 [Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein] 0.304 0.179
55 264386_at AT1G12000 [Phosphofructokinase family protein] 0.304 0.082
56 255714_at AT4G00300 [fringe-related protein] 0.302 0.148
57 266950_at AT2G18910 [hydroxyproline-rich glycoprotein family protein] 0.298 0.323
58 263250_at AT2G31390 [pfkB-like carbohydrate kinase family protein] 0.294 -0.073
59 251989_at AT3G53110 LOS4, LOW EXPRESSION OF OSMOTICALLY RESPONSIVE GENES 4 0.294 0.083
60 257487_at AT1G71850 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.289 0.102
61 264568_at AT1G05150 [Calcium-binding tetratricopeptide family protein] 0.287 0.054
62 261498_at AT1G28440 HSL1, HAESA-like 1 0.287 0.091
63 249863_at AT5G22950 VPS24.1 0.286 0.012
64 263867_at AT2G36830 GAMMA-TIP, gamma tonoplast intrinsic protein, GAMMA-TIP1, GAMMA TONOPLAST INTRINSIC PROTEIN 1, TIP1;1, TONOPLAST INTRINSIC PROTEIN 1;1 0.281 -0.032
65 257033_at AT3G19170 ATPREP1, presequence protease 1, ATZNMP, PREP1, presequence protease 1 0.281 0.289
66 249380_at AT5G40370 GRXC2, glutaredoxin C2 0.279 0.056
67 263432_at AT2G22230 [Thioesterase superfamily protein] 0.278 0.196
68 261602_at AT1G49630 ATPREP2, presequence protease 2, PREP2, presequence protease 2 0.277 0.362
69 263278_at AT2G14120 DRP3B, dynamin related protein 0.277 0.005
70 263156_at AT1G54030 ERMO3, ENDOPLASMIC RETICULUM MORPHOLOGY 3, GOLD36, GOLGI DEFECTS 36, MVP1, MODIFIED VACUOLE PHENOTYPE 1, NUC, NUCLEAR CAGE 0.275 -0.013
71 245164_at AT2G33210 HSP60-2, heat shock protein 60-2 0.272 0.045
72 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.270 -0.172
73 261190_at AT1G32990 PRPL11, plastid ribosomal protein l11 0.269 0.367
74 248105_at AT5G55280 ATFTSZ1-1, ARABIDOPSIS THALIANA HOMOLOG OF BACTERIAL CYTOKINESIS Z-RING PROTEIN FTSZ 1-1, CPFTSZ, CHLOROPLAST FTSZ, FTSZ1-1, homolog of bacterial cytokinesis Z-ring protein FTSZ 1-1 0.269 0.303
75 248721_at AT5G47780 GAUT4, galacturonosyltransferase 4 0.268 0.094
76 258155_at AT3G18130 RACK1C, receptor for activated C kinase 1C, RACK1C_AT, receptor for activated C kinase 1C 0.268 0.109
77 250625_at AT5G07340 [Calreticulin family protein] 0.267 0.142
78 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 0.266 0.023
79 246946_at AT5G25070 unknown 0.265 0.089
80 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 0.263 -0.069
81 260944_at AT1G45130 AtBGAL5, BGAL5, beta-galactosidase 5 0.263 -0.133
82 257937_at AT3G19810 unknown 0.262 0.432
83 245864_at AT1G58070 unknown 0.262 -0.218
84 258966_at AT3G10690 GYRA, DNA GYRASE A 0.261 0.297
85 257741_at AT3G27340 unknown -0.989 -0.144
86 261317_at AT1G53030 [Cytochrome C oxidase copper chaperone (COX17)] -0.827 -0.270
87 257334_at ATMG01370 ORF111D -0.756 -0.168
88 264166_at AT1G65370 [TRAF-like family protein] -0.691 0.032
89 248415_at AT5G51620 [Uncharacterised protein family (UPF0172)] -0.617 -0.140
90 249006_at AT5G44660 unknown -0.609 0.284
91 267397_at AT1G76170 [2-thiocytidine tRNA biosynthesis protein, TtcA] -0.600 0.042
92 267349_at AT2G40010 [Ribosomal protein L10 family protein] -0.597 0.105
93 255923_at AT1G22180 [Sec14p-like phosphatidylinositol transfer family protein] -0.584 -0.309
94 262135_at AT1G78080 AtWIND1, RAP2.4, related to AP2 4, WIND1, wound induced dedifferentiation 1 -0.569 -0.188
95 244903_at ATMG00660 ORF149 -0.561 -0.205
96 255232_at AT4G05330 AGD13, ARF-GAP domain 13 -0.557 0.250
97 260103_at AT1G35430 unknown -0.553 -0.109
98 244974_at ATCG00700 PSBN, photosystem II reaction center protein N -0.536 0.052
99 253422_at AT4G32240 unknown -0.513 -0.198
100 248802_at AT5G47435 [formyltetrahydrofolate deformylase, putative] -0.491 0.083
101 246957_at AT5G24670 EMB2820, EMBRYO DEFECTIVE 2820, TAD3, tRNA adenosine deaminase 3 -0.491 -0.066
102 261969_at AT1G65950 [Protein kinase superfamily protein] -0.486 0.088
103 265451_at AT2G46490 unknown -0.481 -0.023
104 248016_at AT5G56380 [F-box/RNI-like/FBD-like domains-containing protein] -0.481 -0.106
105 249824_at AT5G23380 unknown -0.474 -0.305
106 244950_at ATMG00160 COX2, cytochrome oxidase 2 -0.472 -0.495
107 258623_at AT3G02790 MBS1, METHYLENE BLUE SENSITIVITY 1 -0.471 0.011
108 254362_at AT4G22160 unknown -0.471 -0.189
109 255682_at AT4G00560 [NAD(P)-binding Rossmann-fold superfamily protein] -0.470 -0.027
110 248509_at AT5G50335 unknown -0.469 -0.045
111 262299_at AT1G27520 [Glycosyl hydrolase family 47 protein] -0.459 -0.083
112 246962_s_at AT5G24800 ATBZIP9, ARABIDOPSIS THALIANA BASIC LEUCINE ZIPPER 9, BZIP9, basic leucine zipper 9, BZO2H2, BASIC LEUCINE ZIPPER O2 HOMOLOG 2 -0.459 -0.072
113 265847_at AT2G35750 unknown -0.459 -0.120
114 258124_at AT3G18215 unknown -0.458 -0.107
115 255926_at AT1G22190 RAP2.4, related to AP2 4 -0.458 -0.114
116 247735_at AT5G59440 ATTMPK.1, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.1, ATTMPK.2, ARABIDOPSIS THALIANA THYMIDYLATE KINASE.2, ZEU1, ZEUS1 -0.454 -0.098
117 257460_at AT1G75580 SAUR51, SMALL AUXIN UPREGULATED RNA 51 -0.454 0.123
118 252534_at AT3G46130 ATMYB48, myb domain protein 48, ATMYB48-1, ATMYB48-2, ATMYB48-3, MYB48, myb domain protein 48 -0.452 -0.609
119 249542_at AT5G38140 NF-YC12, nuclear factor Y, subunit C12 -0.452 0.191
120 266811_at AT2G44850 unknown -0.447 -0.303
121 250018_at AT5G18150 [Methyltransferase-related protein] -0.447 -0.119
122 252820_at AT3G42640 AHA8, H(+)-ATPase 8, HA8, H(+)-ATPase 8 -0.438 -0.117
123 251641_at AT3G57470 [Insulinase (Peptidase family M16) family protein] -0.438 0.404
124 250148_at AT5G14530 [Transducin/WD40 repeat-like superfamily protein] -0.435 -0.140
125 244943_at ATMG00070 NAD9, NADH dehydrogenase subunit 9 -0.435 -0.336
126 259515_at AT1G20430 unknown -0.434 -0.005
127 267569_at AT2G30790 PSBP-2, photosystem II subunit P-2 -0.434 0.347
128 248905_at AT5G46250 AtLARP6a, LARP6a, La related protein 6a -0.418 -0.150
129 256302_at AT1G69526 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.416 -0.736
130 246897_at AT5G25560 [CHY-type/CTCHY-type/RING-type Zinc finger protein] -0.414 -0.011
131 258424_at AT3G16750 unknown -0.411 0.020
132 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.405 0.140
133 247979_at AT5G56750 NDL1, N-MYC downregulated-like 1 -0.399 -0.039
134 255403_at AT4G03400 DFL2, DWARF IN LIGHT 2, GH3-10 -0.399 0.360
135 249159_at AT5G43460 [HR-like lesion-inducing protein-related] -0.398 -0.077
136 247696_at AT5G59780 ATMYB59, MYB DOMAIN PROTEIN 59, ATMYB59-1, ATMYB59-2, ATMYB59-3, MYB59, myb domain protein 59 -0.397 -0.461
137 262599_at AT1G15350 unknown -0.395 -0.271
138 248585_at AT5G49640 unknown -0.394 -0.386
139 247742_at AT5G58980 [Neutral/alkaline non-lysosomal ceramidase] -0.393 -0.158
140 251403_at AT3G60300 [RWD domain-containing protein] -0.392 -0.093
141 262382_at AT1G72920 [Toll-Interleukin-Resistance (TIR) domain family protein] -0.390 0.227
142 253672_at AT4G29820 ATCFIM-25, ARABIDOPSIS THALIANA HOMOLOG OF CFIM-25, CFIM-25, homolog of CFIM-25 -0.390 -0.131
143 249058_at AT5G44510 TAO1, target of AVRB operation1 -0.387 -0.148
144 261559_at AT1G01780 PLIM2b, PLIM2b -0.384 -0.291
145 250175_at AT5G14390 [alpha/beta-Hydrolases superfamily protein] -0.382 -0.150
146 247106_at AT5G66240 [Transducin/WD40 repeat-like superfamily protein] -0.380 -0.113
147 250128_at AT5G16540 ZFN3, zinc finger nuclease 3 -0.380 0.243
148 265824_at AT2G35650 ATCSLA07, cellulose synthase like, ATCSLA7, CSLA07, CSLA07, cellulose synthase like, CSLA7, CELLULOSE SYNTHASE LIKE A7 -0.376 0.070
149 263243_at AT2G31350 GLX2-5, glyoxalase 2-5 -0.369 -0.251
150 265101_at AT1G30880 unknown -0.368 -0.114
151 246888_at AT5G26270 unknown -0.367 -0.409
152 255307_at AT4G04900 RIC10, ROP-interactive CRIB motif-containing protein 10 -0.365 0.086
153 264271_at AT1G60270 BGLU6, beta glucosidase 6 -0.363 0.124
154 257830_at AT3G26690 ATNUDT13, ARABIDOPSIS THALIANA NUDIX HYDROLASE HOMOLOG 13, ATNUDX13, nudix hydrolase homolog 13, NUDX13, nudix hydrolase homolog 13 -0.362 -0.187
155 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.358 -0.338
156 267265_at AT2G22980 SCPL13, serine carboxypeptidase-like 13 -0.356 -0.149
157 261030_at AT1G17410 [Nucleoside diphosphate kinase family protein] -0.353 -0.296
158 250586_at AT5G07630 [lipid transporters] -0.351 -0.019
159 244902_at ATMG00650 NAD4L, NADH dehydrogenase subunit 4L -0.350 -0.288
160 267214_at AT2G43970 AtLARP6b, LARP6b, La related protein 6b -0.344 -0.146
161 264586_at AT1G05160 ATKAO1, CYP88A3, cytochrome P450, family 88, subfamily A, polypeptide 3, KAO1, ENT-KAURENOIC ACID OXYDASE 1 -0.342 -0.064
162 253462_at AT4G32150 ATVAMP711, vesicle-associated membrane protein 711, VAMP711, vesicle-associated membrane protein 711 -0.341 -0.209
163 261140_at AT1G19680 [RING/U-box superfamily protein] -0.341 -0.201
164 251100_at AT5G01670 [NAD(P)-linked oxidoreductase superfamily protein] -0.340 -0.494
165 252426_at AT3G47630 unknown -0.339 0.019
166 247883_at AT5G57790 unknown -0.339 -0.083
167 260307_at AT1G70620 [cyclin-related] -0.336 0.076