4.0:Information of module
tcp13/+ tcp14/+
In comparison with seed coat help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0055062 phosphate ion homeostasis BP 1.497e-03
GO:0055083 monovalent inorganic anion homeostasis BP 1.497e-03
GO:0072505 divalent inorganic anion homeostasis BP 1.497e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009826 unidimensional cell growth BP 1.389e-15
GO:0009860 pollen tube growth BP 5.336e-15
GO:0048868 pollen tube development BP 2.489e-14
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
tcp13/+ tcp14/+		 Log2 signal ratio
seed coat
1 248545_at AT5G50260 CEP1, cysteine endopeptidase 1 0.452 1.017
2 262916_at AT1G59700 ATGSTU16, glutathione S-transferase TAU 16, GSTU16, glutathione S-transferase TAU 16 0.216 0.745
3 245993_at AT5G20700 unknown 0.207 1.566
4 261930_at AT1G22440 [Zinc-binding alcohol dehydrogenase family protein] 0.162 -0.266
5 250498_at AT5G09660 PMDH2, peroxisomal NAD-malate dehydrogenase 2 0.158 -0.419
6 259058_at AT3G03470 CYP89A9, cytochrome P450, family 87, subfamily A, polypeptide 9 0.156 0.784
7 262505_at AT1G21680 [DPP6 N-terminal domain-like protein] 0.152 0.339
8 266530_at AT2G16910 AMS, ABORTED MICROSPORES 0.150 -0.311
9 266362_at AT2G32430 [Galactosyltransferase family protein] 0.150 0.652
10 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 0.150 -1.079
11 249139_at AT5G43170 AZF3, zinc-finger protein 3, ZF3, zinc-finger protein 3 0.147 0.008
12 261135_at AT1G19610 LCR78, LOW-MOLECULAR-WEIGHT CYSTEINE-RICH 78, PDF1.4 0.144 -0.436
13 260690_at AT1G32340 NHL8, NDR1/HIN1-like 8 0.132 0.431
14 255707_at AT4G00231 MEE50, maternal effect embryo arrest 50 0.129 0.294
15 250429_at AT5G10470 KAC1, kinesin like protein for actin based chloroplast movement 1, KCA1, KINESIN CDKA;1 ASSOCIATED 1 0.122 0.569
16 246567_at AT5G14950 ATGMII, GMII, golgi alpha-mannosidase II 0.121 -0.214
17 255648_at AT4G00910 [Aluminium activated malate transporter family protein] 0.115 0.356
18 264801_at AT1G08840 emb2411, embryo defective 2411 0.113 0.345
19 267549_at AT2G32640 [Lycopene beta/epsilon cyclase protein] 0.112 0.283
20 260015_at AT1G67980 CCOAMT, caffeoyl-CoA 3-O-methyltransferase 0.108 -0.076
21 251530_at AT3G58520 [Ubiquitin carboxyl-terminal hydrolase family protein] 0.107 -0.115
22 261505_at AT1G71696 SOL1, SUPPRESSOR OF LLP1 1 0.105 0.261
23 246947_at AT5G25120 CYP71B11, ytochrome p450, family 71, subfamily B, polypeptide 11 0.104 0.760
24 252514_at AT3G46060 ARA-3, ARA3, ATRAB8A, RAB GTPase homolog 8A, ATRABE1C, RAB8A, RAB GTPase homolog 8A, RABE1c 0.104 1.502
25 250419_at AT5G11250 [Disease resistance protein (TIR-NBS-LRR class)] 0.103 -0.543
26 267490_at AT2G19130 [S-locus lectin protein kinase family protein] 0.103 0.267
27 253533_at AT4G31590 ATCSLC05, CELLULOSE-SYNTHASE LIKE C5, ATCSLC5, Cellulose-synthase-like C5, CSLC05, CELLULOSE-SYNTHASE LIKE C5, CSLC5, Cellulose-synthase-like C5 0.099 -0.993
28 259266_at AT3G01240 unknown -1.093 -0.743
29 248714_at AT5G48140 [Pectin lyase-like superfamily protein] -1.009 -0.354
30 248470_at AT5G50830 unknown -1.001 -0.256
31 249429_at AT5G39880 unknown -0.996 -0.577
32 253831_at AT4G27580 unknown -0.951 -0.825
33 257819_at AT3G25165 RALFL25, ralf-like 25 -0.901 -0.520
34 246545_at AT5G15110 [Pectate lyase family protein] -0.892 -0.845
35 257821_at AT3G25170 RALFL26, ralf-like 26 -0.889 0.120
36 261528_at AT1G14420 AT59 -0.870 -0.726
37 256945_at AT3G19020 [Leucine-rich repeat (LRR) family protein] -0.858 0.233
38 261623_at AT1G01980 [ATSEC1A] -0.857 -0.303
39 262022_at AT1G35490 [bZIP family transcription factor] -0.853 -0.818
40 248194_at AT5G54095 unknown -0.851 -0.862
41 248822_at AT5G47000 [Peroxidase superfamily protein] -0.845 -0.519
42 267476_at AT2G02720 [Pectate lyase family protein] -0.831 -0.790
43 245501_at AT4G15620 [Uncharacterised protein family (UPF0497)] -0.795 -0.504
44 262664_at AT1G13970 unknown -0.793 0.426
45 251854_at AT3G54800 [Pleckstrin homology (PH) and lipid-binding START domains-containing protein] -0.791 -0.394
46 250631_at AT5G07430 [Pectin lyase-like superfamily protein] -0.784 -0.570
47 251252_at AT3G62230 DAF1, DUO1-activated F-box 1 -0.777 -0.538
48 251180_at AT3G62640 unknown -0.772 -1.284
49 265368_at AT2G13350 [Calcium-dependent lipid-binding (CaLB domain) family protein] -0.764 -0.227
50 263450_at AT2G31500 CPK24, calcium-dependent protein kinase 24 -0.756 0.042
51 266918_at AT2G45800 PLIM2a, PLIM2a -0.750 -0.491
52 257090_at AT3G20530 [Protein kinase superfamily protein] -0.738 0.172
53 262696_at AT1G75870 unknown -0.727 0.047
54 245700_at AT5G04180 ACA3, alpha carbonic anhydrase 3, ATACA3, ALPHA CARBONIC ANHYDRASE 3 -0.724 0.366