4.0:Information of module
cngc1
In comparison with cat2-2; 8h switch to ambient CO2 concentrations; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009793 embryo development ending in seed dorman... BP 5.785e-06
GO:0009790 embryo development BP 6.455e-06
GO:0044767 single-organism developmental process BP 1.142e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010413 glucuronoxylan metabolic process BP 8.090e-03
GO:0045492 xylan biosynthetic process BP 8.618e-03
GO:0045491 xylan metabolic process BP 9.751e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
cngc1		 Log2 signal ratio
cat2-2; 8h switch to ambient CO2 concentrations;
1 258585_at AT3G04340 emb2458, embryo defective 2458 0.240 0.026
2 258746_at AT3G05950 [RmlC-like cupins superfamily protein] 0.223 0.010
3 256140_at AT1G48650 [DEA(D/H)-box RNA helicase family protein] 0.201 0.090
4 261800_at AT1G30490 ATHB9, PHV, PHAVOLUTA 0.198 0.001
5 253495_at AT4G31850 PGR3, proton gradient regulation 3 0.173 0.002
6 249800_at AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 0.165 0.074
7 253281_at AT4G34138 UGT73B1, UDP-glucosyl transferase 73B1 0.157 0.177
8 263037_at AT1G23230 unknown 0.157 0.088
9 259672_at AT1G68990 MGP3, male gametophyte defective 3 0.152 0.082
10 246159_at AT5G20935 CRR42, CHLORORESPIRATORY REDUCTION 42 0.148 -0.122
11 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 0.148 0.035
12 265902_at AT2G25590 [Plant Tudor-like protein] 0.146 0.113
13 255096_at AT4G08600 unknown 0.141 -0.023
14 263324_at AT2G04220 unknown 0.141 -0.045
15 252504_at AT3G46590 ATTRP2, TRFL1, TRF-like 1, TRP2 0.139 0.006
16 264126_at AT1G79280 AtTPR, TRANSLOCATED PROMOTER REGION, NUA, nuclear pore anchor 0.139 0.127
17 258966_at AT3G10690 GYRA, DNA GYRASE A 0.139 -0.012
18 264948_at AT1G77030 [hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides] 0.136 -0.006
19 257196_at AT3G23790 AAE16, acyl activating enzyme 16 0.134 0.058
20 246257_at AT4G36690 ATU2AF65A 0.133 0.044
21 252105_at AT3G51470 [Protein phosphatase 2C family protein] 0.129 -0.061
22 261404_at AT1G18690 XXT4, xyloglucan xylosyltransferase 4 0.128 -0.011
23 255078_at AT4G09010 APX4, ascorbate peroxidase 4, TL29, thylakoid lumen 29 0.126 -0.035
24 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.123 0.025
25 252182_at AT3G50670 U1-70K, U1 small nuclear ribonucleoprotein-70K, U1SNRNP 0.123 0.023
26 252492_at AT3G46740 MAR1, MODIFIER OF ARG1 1, TOC75-III, translocon at the outer envelope membrane of chloroplasts 75-III 0.122 -0.039
27 258766_at AT3G10700 GalAK, galacturonic acid kinase 0.122 -0.014
28 264709_at AT1G09770 ATCDC5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, ATMYBCDC5, ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, CDC5, cell division cycle 5 0.120 0.058
29 255382_at AT4G03430 EMB2770, EMBRYO DEFECTIVE 2770, STA1, STABILIZED 1 0.119 0.038
30 266033_at AT2G05830 MTI1, 5-METHYLTHIORIBOSE KINASE 1 0.119 -0.043
31 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 0.116 -0.024
32 250586_at AT5G07630 [lipid transporters] 0.114 -0.020
33 264977_at AT1G27090 [glycine-rich protein] -0.541 -0.025
34 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 -0.337 0.045
35 253188_at AT4G35300 TMT2, tonoplast monosaccharide transporter2 -0.327 0.010
36 253830_at AT4G27652 unknown -0.308 -0.050
37 258540_at AT3G06990 [Cysteine/Histidine-rich C1 domain family protein] -0.248 -0.069
38 245228_at AT3G29810 COBL2, COBRA-like protein 2 precursor -0.240 0.032
39 266419_at AT2G38760 ANN3, ANNEXIN 3, ANNAT3, annexin 3, AtANN3 -0.230 0.033
40 266803_at AT2G28930 APK1B, protein kinase 1B, PK1B, protein kinase 1B -0.191 -0.011
41 264574_at AT1G05300 ZIP5, zinc transporter 5 precursor -0.190 -0.070
42 251784_at AT3G55330 PPL1, PsbP-like protein 1 -0.188 -0.034
43 250431_at AT5G10440 CYCD4;2, cyclin d4;2 -0.185 -0.004
44 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.182 0.003
45 245242_at AT1G44446 ATCAO, ARABIDOPSIS THALIANA CHLOROPHYLL A OXYGENASE, CAO, CHLOROPHYLL A OXYGENASE, CH1, CHLORINA 1 -0.182 0.000
46 253946_at AT4G26790 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.181 -0.057
47 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 -0.174 0.081
48 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 -0.174 -0.018
49 250949_at AT5G03510 [C2H2-type zinc finger family protein] -0.172 0.007
50 252905_at AT4G39720 [VQ motif-containing protein] -0.162 0.004
51 254632_at AT4G18630 unknown -0.158 0.110
52 257371_at AT2G47810 NF-YB5, nuclear factor Y, subunit B5 -0.155 0.016
53 248250_at AT5G53130 ATCNGC1, CYCLIC NUCLEOTIDE-GATED CHANNEL 1, CNGC1, cyclic nucleotide gated channel 1 -0.145 0.025
54 261177_at AT1G04770 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.143 0.079
55 247970_at AT5G56720 c-NAD-MDH3, cytosolic-NAD-dependent malate dehydrogenase 3 -0.138 0.005
56 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] -0.136 -0.041
57 258631_at AT3G07970 QRT2, QUARTET 2 -0.135 0.052
58 250296_at AT5G12020 HSP17.6II, 17.6 kDa class II heat shock protein -0.132 0.783
59 259850_at AT1G72240 unknown -0.131 -0.063
60 264142_at AT1G78930 [Mitochondrial transcription termination factor family protein] -0.129 -0.035
61 246097_at AT5G20270 HHP1, heptahelical transmembrane protein1 -0.129 -0.048
62 247765_at AT5G58860 CYP86, CYP86A1, cytochrome P450, family 86, subfamily A, polypeptide 1, HORST, hydroxylase of root suberized tissue -0.128 -0.014
63 260941_at AT1G44970 [Peroxidase superfamily protein] -0.126 -0.017