4.0:Information of module
col-5 hrpA 4h
In comparison with aerial organ callus inducing medium 96 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0015711 organic anion transport BP 3.302e-32
GO:0071702 organic substance transport BP 6.451e-32
GO:0006820 anion transport BP 1.200e-31
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0050801 ion homeostasis BP 1.509e-04
GO:0015979 photosynthesis BP 1.518e-04
GO:0035304 regulation of protein dephosphorylation BP 1.860e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
col-5 hrpA 4h		 Log2 signal ratio
aerial organ callus inducing medium 96 h
1 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.728 -0.076
2 256044_at AT1G07160 [Protein phosphatase 2C family protein] 0.704 0.042
3 266975_at AT2G39380 ATEXO70H2, exocyst subunit exo70 family protein H2, EXO70H2, exocyst subunit exo70 family protein H2 0.600 0.192
4 255568_at AT4G01250 AtWRKY22, WRKY22 0.593 -0.088
5 245556_at AT4G15400 ABS1, ABNORMAL SHOOT 1, BIA1, BRASSINOSTEROID INACTIVATOR1 0.549 0.020
6 266779_at AT2G29100 ATGLR2.9, glutamate receptor 2.9, GLR2.9, GLUTAMATE RECEPTOR 2.9, GLR2.9, glutamate receptor 2.9 0.541 -0.126
7 263228_at AT1G30700 [FAD-binding Berberine family protein] 0.524 0.904
8 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.512 -0.064
9 256378_at AT1G66830 [Leucine-rich repeat protein kinase family protein] 0.505 0.357
10 253392_at AT4G32650 ATKC1, ARABIDOPSIS THALIANA K+ RECTIFYING CHANNEL 1, AtLKT1, A. thaliana low-K+-tolerant 1, KAT3, potassium channel in Arabidopsis thaliana 3, KC1 0.498 0.617
11 251097_at AT5G01560 LecRK-VI.4, L-type lectin receptor kinase VI.4, LECRKA4.3, lectin receptor kinase a4.3 0.492 0.003
12 259443_at AT1G02360 [Chitinase family protein] 0.487 0.339
13 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 0.481 0.171
14 263797_at AT2G24570 ATWRKY17, WRKY17, WRKY DNA-binding protein 17 0.471 0.196
15 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 0.467 -0.035
16 250153_at AT5G15130 ATWRKY72, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY72, WRKY DNA-binding protein 72 0.459 0.093
17 263411_at AT2G28710 [C2H2-type zinc finger family protein] 0.459 -0.076
18 261474_at AT1G14540 PER4, peroxidase 4 0.439 -0.015
19 248934_at AT5G46080 [Protein kinase superfamily protein] 0.429 0.189
20 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.413 0.881
21 249051_at AT5G44390 [FAD-binding Berberine family protein] 0.410 0.011
22 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.405 1.025
23 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 0.400 -0.031
24 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.398 0.232
25 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.387 0.172
26 254897_at AT4G11470 CRK31, cysteine-rich RLK (RECEPTOR-like protein kinase) 31 0.380 0.046
27 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.371 0.094
28 254468_at AT4G20460 [NAD(P)-binding Rossmann-fold superfamily protein] 0.367 0.072
29 252045_at AT3G52450 AtPUB22, PUB22, plant U-box 22 0.367 0.171
30 249459_at AT5G39580 [Peroxidase superfamily protein] 0.366 0.770
31 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.354 0.541
32 255884_at AT1G20310 unknown 0.354 -0.062
33 246228_at AT4G36430 [Peroxidase superfamily protein] 0.339 0.977
34 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.334 0.062
35 260276_at AT1G80450 [VQ motif-containing protein] 0.331 -0.059
36 263937_at AT2G35910 [RING/U-box superfamily protein] 0.328 0.044
37 255845_at AT2G33600 AtCRL2, CRL2, CCR(Cinnamoyl coA:NADP oxidoreductase)-like 2 0.324 -0.025
38 253535_at AT4G31550 ATWRKY11, WRKY11, WRKY DNA-binding protein 11 0.321 0.202
39 252511_at AT3G46280 [protein kinase-related] 0.320 1.005
40 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.311 0.641
41 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 0.302 0.354
42 250821_at AT5G05190 unknown 0.301 -0.079
43 251096_at AT5G01550 LecRK-VI.3, L-type lectin receptor kinase VI.3, LECRKA4.2, lectin receptor kinase a4.1 0.297 0.104
44 255595_at AT4G01700 [Chitinase family protein] 0.295 0.443
45 266247_at AT2G27660 [Cysteine/Histidine-rich C1 domain family protein] 0.293 0.049
46 253796_at AT4G28460 unknown 0.292 0.033
47 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.289 0.625
48 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] -0.290 0.016
49 245861_at AT5G28300 AtGT2L, GT2L, GT-2Like protein -0.287 0.040
50 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.283 0.097
51 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.259 0.044
52 245749_at AT1G51090 [Heavy metal transport/detoxification superfamily protein ] -0.256 -0.016
53 250613_at AT5G07240 IQD24, IQ-domain 24 -0.249 -0.514
54 264217_at AT1G60190 AtPUB19, PUB19, plant U-box 19 -0.241 -0.094
55 262644_at AT1G62710 BETA-VPE, beta vacuolar processing enzyme, BETAVPE -0.236 -0.192
56 245724_at AT1G73390 [Endosomal targeting BRO1-like domain-containing protein] -0.222 -0.305
57 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] -0.217 -0.109
58 261407_at AT1G18810 [phytochrome kinase substrate-related] -0.216 -0.893
59 246260_at AT1G31820 PUT1, POLYAMINE UPTAKE TRANSPORTER 1 -0.214 0.268
60 264661_at AT1G09950 RAS1, RESPONSE TO ABA AND SALT 1 -0.208 0.029
61 248537_at AT5G50100 [Putative thiol-disulphide oxidoreductase DCC] -0.206 -0.648
62 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.199 -0.048
63 247156_at AT5G65760 [Serine carboxypeptidase S28 family protein] -0.197 0.027
64 257954_at AT3G21760 HYR1, HYPOSTATIN RESISTANCE 1 -0.192 -0.580
65 252255_at AT3G49220 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.190 -0.051
66 247186_at AT5G65470 [O-fucosyltransferase family protein] -0.186 0.111
67 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.185 -0.140
68 257628_at AT3G26290 CYP71B26, cytochrome P450, family 71, subfamily B, polypeptide 26 -0.185 0.108
69 261315_at AT1G53170 ATERF-8, ATERF8, ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ERF8, ethylene response factor 8 -0.184 -0.062
70 262496_at AT1G21790 [TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein] -0.182 -0.110
71 261522_at AT1G71710 [DNAse I-like superfamily protein] -0.182 -0.156
72 245776_at AT1G30260 unknown -0.180 -0.556
73 258750_at AT3G05910 [Pectinacetylesterase family protein] -0.179 0.002
74 253048_at AT4G37560 [Acetamidase/Formamidase family protein] -0.170 -0.593
75 247025_at AT5G67030 ABA1, ABA DEFICIENT 1, ATABA1, ARABIDOPSIS THALIANA ABA DEFICIENT 1, ATZEP, ARABIDOPSIS THALIANA ZEAXANTHIN EPOXIDASE, IBS3, IMPAIRED IN BABA-INDUCED STERILITY 3, LOS6, LOW EXPRESSION OF OSMOTIC STRESS-RESPONSIVE GENES 6, NPQ2, NON-PHOTOCHEMICAL QUENCHING 2, ZEP, ZEAXANTHIN EPOXIDASE -0.170 -0.392
76 267093_at AT2G38170 ATCAX1, CAX1, cation exchanger 1, RCI4, RARE COLD INDUCIBLE 4 -0.169 -0.135
77 254085_at AT4G24960 ATHVA22D, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE D, HVA22D, HVA22 homologue D -0.166 0.116
78 247889_at AT5G57930 APO2, ACCUMULATION OF PHOTOSYSTEM ONE 2, emb1629, embryo defective 1629 -0.161 -0.414
79 254305_at AT4G22200 AKT2, AKT2/3, potassium transport 2/3, AKT3, KT2/3, potassium transport 2/3 -0.161 -0.608
80 246756_at AT5G27930 [Protein phosphatase 2C family protein] -0.161 0.185
81 248560_at AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase -0.158 -0.253
82 258813_at AT3G04060 anac046, NAC domain containing protein 46, NAC046, NAC domain containing protein 46 -0.158 0.255
83 265698_at AT2G32160 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.156 0.001
84 251719_at AT3G56140 unknown -0.156 -0.215
85 264250_at AT1G78680 ATGGH2, gamma-glutamyl hydrolase 2, GGH2, gamma-glutamyl hydrolase 2 -0.153 0.029
86 264315_at AT1G70370 PG2, polygalacturonase 2 -0.152 -0.035
87 257646_at AT3G25740 MAP1B, methionine aminopeptidase 1C, MAP1C, METHIONINE AMINOPEPTIDASE 1C -0.144 -0.274
88 266172_at AT2G39010 PIP2;6, PLASMA MEMBRANE INTRINSIC PROTEIN 2;6, PIP2E, plasma membrane intrinsic protein 2E -0.144 -0.045
89 251853_at AT3G54790 [ARM repeat superfamily protein] -0.142 -0.033
90 245427_at AT4G17550 AtG3Pp4, glycerol-3-phosphate permease 4, G3Pp4, glycerol-3-phosphate permease 4 -0.142 -0.175
91 254667_at AT4G18280 [glycine-rich cell wall protein-related] -0.140 0.154
92 258643_at AT3G08010 ATAB2 -0.140 -0.472
93 262181_at AT1G78060 [Glycosyl hydrolase family protein] -0.139 -0.021