4.0:Information of module
col-5 DC3000 4h
In comparison with cat2-2; harvested 8h continiously maintained in high CO2; help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0001510 RNA methylation BP 2.049e-21
GO:0006865 amino acid transport BP 3.175e-18
GO:0009451 RNA modification BP 6.275e-18
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0000023 maltose metabolic process BP 1.478e-08
GO:0005982 starch metabolic process BP 5.260e-08
GO:0005984 disaccharide metabolic process BP 6.627e-08
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
col-5 DC3000 4h		 Log2 signal ratio
cat2-2; harvested 8h continiously maintained in high CO2;
1 256181_at AT1G51820 [Leucine-rich repeat protein kinase family protein] 0.692 -0.169
2 266975_at AT2G39380 ATEXO70H2, exocyst subunit exo70 family protein H2, EXO70H2, exocyst subunit exo70 family protein H2 0.597 -0.105
3 255568_at AT4G01250 AtWRKY22, WRKY22 0.533 -0.246
4 263228_at AT1G30700 [FAD-binding Berberine family protein] 0.503 -0.298
5 256378_at AT1G66830 [Leucine-rich repeat protein kinase family protein] 0.499 -0.032
6 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 0.492 -0.032
7 266779_at AT2G29100 ATGLR2.9, glutamate receptor 2.9, GLR2.9, GLUTAMATE RECEPTOR 2.9, GLR2.9, glutamate receptor 2.9 0.485 -0.066
8 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 0.472 -0.106
9 263797_at AT2G24570 ATWRKY17, WRKY17, WRKY DNA-binding protein 17 0.470 -0.062
10 261006_at AT1G26410 [FAD-binding Berberine family protein] 0.437 -0.219
11 259443_at AT1G02360 [Chitinase family protein] 0.420 -0.195
12 245151_at AT2G47550 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.408 -0.026
13 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.405 -0.202
14 263411_at AT2G28710 [C2H2-type zinc finger family protein] 0.405 -0.050
15 245556_at AT4G15400 ABS1, ABNORMAL SHOOT 1, BIA1, BRASSINOSTEROID INACTIVATOR1 0.386 -0.049
16 260432_at AT1G68150 ATWRKY9, WRKY9, WRKY DNA-binding protein 9 0.385 -0.015
17 261474_at AT1G14540 PER4, peroxidase 4 0.372 -0.030
18 248980_at AT5G45090 AtPP2-A7, phloem protein 2-A7, PP2-A7, phloem protein 2-A7 0.371 -0.094
19 249459_at AT5G39580 [Peroxidase superfamily protein] 0.351 -0.507
20 246071_at AT5G20150 ATSPX1, ARABIDOPSIS THALIANA SPX DOMAIN GENE 1, SPX1, SPX domain gene 1 0.347 -0.004
21 254905_at AT4G11170 RMG1, Resistance Methylated Gene 1 0.345 -0.328
22 260276_at AT1G80450 [VQ motif-containing protein] 0.339 -0.117
23 258856_at AT3G02040 AtGDPD1, GDPD1, Glycerophosphodiester phosphodiesterase 1, SRG3, senescence-related gene 3 0.333 -0.050
24 254468_at AT4G20460 [NAD(P)-binding Rossmann-fold superfamily protein] 0.327 -0.110
25 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.326 0.059
26 255884_at AT1G20310 unknown 0.323 -0.012
27 250821_at AT5G05190 unknown 0.314 -0.101
28 246228_at AT4G36430 [Peroxidase superfamily protein] 0.310 -0.151
29 248701_at AT5G48410 ATGLR1.3, ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 1.3, GLR1.3, glutamate receptor 1.3 0.305 -0.037
30 253535_at AT4G31550 ATWRKY11, WRKY11, WRKY DNA-binding protein 11 0.298 0.006
31 263937_at AT2G35910 [RING/U-box superfamily protein] 0.295 -0.029
32 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.293 -0.237
33 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.292 0.012
34 256169_at AT1G51800 IOS1, IMPAIRED OOMYCETE SUSCEPTIBILITY 1 0.290 -0.414
35 259120_at AT3G02240 GLV4, GOLVEN 4, RGF7, root meristem growth factor 7 0.290 -0.234
36 257061_at AT3G18250 [Putative membrane lipoprotein] 0.289 -0.324
37 252511_at AT3G46280 [protein kinase-related] 0.284 -0.427
38 255595_at AT4G01700 [Chitinase family protein] 0.282 -0.174
39 251096_at AT5G01550 LecRK-VI.3, L-type lectin receptor kinase VI.3, LECRKA4.2, lectin receptor kinase a4.1 0.272 -0.100
40 258323_at AT3G22750 [Protein kinase superfamily protein] 0.270 -0.050
41 263935_at AT2G35930 AtPUB23, PUB23, plant U-box 23 0.259 -0.166
42 264357_at AT1G03360 ATRRP4, ribosomal RNA processing 4, RRP4, ribosomal RNA processing 4 0.258 0.023
43 256499_at AT1G36640 unknown 0.258 -0.037
44 266967_at AT2G39530 [Uncharacterised protein family (UPF0497)] 0.255 -0.348
45 256158_at AT1G13590 ATPSK1, phytosulfokine 1 precursor, PSK1, phytosulfokine 1 precursor 0.251 0.010
46 247532_at AT5G61560 [U-box domain-containing protein kinase family protein] 0.249 -0.125
47 263385_at AT2G40170 ATEM6, ARABIDOPSIS EARLY METHIONINE-LABELLED 6, EM6, EARLY METHIONINE-LABELLED 6, GEA6, LATE EMBRYOGENESIS ABUNDANT 6 0.248 -0.040
48 247297_at AT5G64100 [Peroxidase superfamily protein] 0.243 -0.455
49 257619_at AT3G24810 ICK3, KRP5, kip-related protein 5 0.241 0.027
50 257846_at AT3G12910 [NAC (No Apical Meristem) domain transcriptional regulator superfamily protein] 0.239 -0.034
51 247227_at AT5G65130 [Integrase-type DNA-binding superfamily protein] 0.238 -0.012
52 253493_at AT4G31820 ENP, ENHANCER OF PINOID, MAB4, MACCHI-BOU 4, NPY1, NAKED PINS IN YUC MUTANTS 1 0.237 0.083
53 264717_at AT1G70140 ATFH8, formin 8, FH8, formin 8 0.234 -0.134
54 258752_at AT3G09520 ATEXO70H4, exocyst subunit exo70 family protein H4, EXO70H4, exocyst subunit exo70 family protein H4 0.233 0.006
55 252625_at AT3G44750 ATHD2A, HD2A, HISTONE DEACETYLASE 2A, HDA3, histone deacetylase 3, HDT1 0.222 -0.009
56 249943_at AT5G22280 unknown 0.220 -0.033
57 246146_at AT5G20050 [Protein kinase superfamily protein] 0.220 -0.043
58 257377_at AT2G28890 PLL4, poltergeist like 4 0.217 -0.070
59 267226_at AT2G44010 unknown 0.217 -0.267
60 258396_at AT3G15460 [Ribosomal RNA processing Brix domain protein] 0.215 0.022
61 261005_at AT1G26420 [FAD-binding Berberine family protein] 0.212 -0.467
62 267547_at AT2G32670 ATVAMP725, vesicle-associated membrane protein 725, VAMP725, vesicle-associated membrane protein 725 0.210 0.084
63 253012_at AT4G37900 unknown 0.206 -0.042
64 252098_at AT3G51330 [Eukaryotic aspartyl protease family protein] 0.206 -0.390
65 253777_at AT4G28450 [nucleotide binding] 0.205 0.010
66 250257_at AT5G13770 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.447 0.009
67 250884_at AT5G03940 54CP, 54 CHLOROPLAST PROTEIN, CPSRP54, chloroplast signal recognition particle 54 kDa subunit, FFC, FIFTY-FOUR CHLOROPLAST HOMOLOGUE, SRP54CP, SIGNAL RECOGNITION PARTICLE 54 KDA SUBUNIT CHLOROPLAST PROTEIN -0.342 0.026
68 267592_at AT2G39710 [Eukaryotic aspartyl protease family protein] -0.330 0.041
69 258113_at AT3G14650 CYP72A11, cytochrome P450, family 72, subfamily A, polypeptide 11 -0.328 0.037
70 263473_at AT2G31750 UGT74D1, UDP-glucosyl transferase 74D1 -0.320 0.105
71 257076_at AT3G19680 unknown -0.296 0.061
72 261366_at AT1G53100 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] -0.271 -0.034
73 264247_at AT1G60160 [Potassium transporter family protein] -0.266 0.012
74 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 -0.249 -0.021
75 248082_at AT5G55400 [Actin binding Calponin homology (CH) domain-containing protein] -0.245 0.005
76 245861_at AT5G28300 AtGT2L, GT2L, GT-2Like protein -0.237 -0.037
77 247248_at AT5G64560 ATMGT9, MGT9, magnesium transporter 9, MRS2-2 -0.229 0.028
78 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.229 0.078
79 255818_at AT2G33570 GALS1, galactan synthase 1 -0.227 0.051
80 261407_at AT1G18810 [phytochrome kinase substrate-related] -0.225 0.070
81 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 -0.223 -0.008
82 251500_at AT3G59110 [Protein kinase superfamily protein] -0.223 0.070
83 251791_at AT3G55500 ATEXP16, ATEXPA16, expansin A16, ATHEXP ALPHA 1.7, EXP16, EXPANSIN 16, EXPA16, expansin A16 -0.222 0.129
84 253876_at AT4G27430 CIP7, COP1-interacting protein 7 -0.214 0.049
85 266990_at AT2G39190 ATATH8 -0.212 0.051
86 261927_at AT1G22500 AtATL15, Arabidopsis thaliana Arabidopsis toxicos en levadura 15, ATL15, Arabidopsis toxicos en levadura 15 -0.208 -0.067
87 262164_at AT1G78070 [Transducin/WD40 repeat-like superfamily protein] -0.206 0.082
88 256598_at AT3G30180 BR6OX2, brassinosteroid-6-oxidase 2, CYP85A2 -0.204 -0.001
89 264781_at AT1G08540 ABC1, ATSIG1, SIGMA FACTOR 1, ATSIG2, SIGMA FACTOR 2, SIG1, RNA POLYMERASE SIGMA SUBUNIT 1, SIG2, RNApolymerase sigma subunit 2, SIGA, SIGB, SIGMA FACTOR B -0.203 0.023
90 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.202 0.021
91 246800_at AT5G26780 SHM2, serine hydroxymethyltransferase 2 -0.195 0.043
92 254496_at AT4G20070 AAH, allantoate amidohydrolase, ATAAH, allantoate amidohydrolase -0.191 0.054
93 262871_at AT1G65010 [INVOLVED IN: flower development] -0.190 0.043
94 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.186 0.036
95 259017_at AT3G07310 unknown -0.184 0.041
96 258663_at AT3G08670 unknown -0.184 0.027
97 262181_at AT1G78060 [Glycosyl hydrolase family protein] -0.181 0.036
98 252996_s_at AT4G38460 AtSSU, GGR, geranylgeranyl reductase, SSU, small subunit of Heterodimeric geranyl(geranyl)diphosphate synthase -0.179 -0.007
99 247356_at AT5G63800 BGAL6, beta-galactosidase 6, MUM2, MUCILAGE-MODIFIED 2 -0.175 0.019
100 248303_at AT5G53170 FTSH11, FTSH protease 11 -0.173 0.015
101 247861_at AT5G58160 [actin binding] -0.171 -0.005
102 258750_at AT3G05910 [Pectinacetylesterase family protein] -0.171 0.025
103 256140_at AT1G48650 [DEA(D/H)-box RNA helicase family protein] -0.170 0.038
104 250250_at AT5G13610 unknown -0.168 0.032
105 258696_at AT3G09650 CRM3, HCF152, HIGH CHLOROPHYLL FLUORESCENCE 152 -0.168 0.023
106 246829_at AT5G26570 ATGWD3, OK1, PWD, PHOSPHOGLUCAN WATER DIKINASE -0.164 0.021
107 247092_at AT5G66380 ATFOLT1, folate transporter 1, FOLT1, folate transporter 1 -0.162 -0.008
108 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.162 0.086
109 255673_at AT4G00340 RLK4, receptor-like protein kinase 4 -0.160 0.029
110 248560_at AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase -0.159 0.029
111 250441_at AT5G10540 TOP2, thimet metalloendopeptidase 2 -0.159 0.018
112 257999_at AT3G27540 [beta-1,4-N-acetylglucosaminyltransferase family protein] -0.159 0.046
113 251066_at AT5G01880 DAFL2, DAF-Like gene 2 -0.157 0.052
114 245427_at AT4G17550 AtG3Pp4, glycerol-3-phosphate permease 4, G3Pp4, glycerol-3-phosphate permease 4 -0.156 0.060
115 260474_at AT1G11090 [alpha/beta-Hydrolases superfamily protein] -0.153 0.023
116 246990_at AT5G67360 ARA12 -0.153 0.024
117 254878_at AT4G11660 AT-HSFB2B, HSF7, HSFB2B, HEAT SHOCK TRANSCRIPTION FACTOR B2B -0.151 0.016
118 246200_at AT4G37240 unknown -0.151 0.053
119 256754_at AT3G25690 AtCHUP1, Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, CHUP1, CHLOROPLAST UNUSUAL POSITIONING 1 -0.150 0.015
120 258151_at AT3G18080 BGLU44, B-S glucosidase 44 -0.147 0.003
121 246756_at AT5G27930 [Protein phosphatase 2C family protein] -0.145 0.007
122 247186_at AT5G65470 [O-fucosyltransferase family protein] -0.144 0.045
123 266438_at AT2G43180 [Phosphoenolpyruvate carboxylase family protein] -0.144 0.039
124 251068_at AT5G01920 STN8, State transition 8 -0.139 0.028
125 266417_at AT2G38550 [Transmembrane proteins 14C] -0.139 0.020
126 245776_at AT1G30260 unknown -0.139 -0.037
127 261909_at AT1G80680 MOS3, MODIFIER OF SNC1,3, NUP96, PRE, PRECOCIOUS, SAR3, SUPPRESSOR OF AUXIN RESISTANCE 3 -0.138 -0.013
128 250854_at AT5G04710 [Zn-dependent exopeptidases superfamily protein] -0.138 0.030
129 258291_at AT3G23310 [AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein] -0.137 0.043