4.0:Information of module
col-5 hrpA 2h
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0071705 nitrogen compound transport BP 2.021e-19
GO:0006865 amino acid transport BP 3.508e-19
GO:0015711 organic anion transport BP 4.471e-19
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006790 sulfur compound metabolic process BP 2.914e-11
GO:0000096 sulfur amino acid metabolic process BP 1.697e-09
GO:0044272 sulfur compound biosynthetic process BP 2.637e-09
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
col-5 hrpA 2h		 Log2 signal ratio
Leafminer damaged seedlings
1 248090_at AT5G55090 MAPKKK15, mitogen-activated protein kinase kinase kinase 15 1.019 0.318
2 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] 0.807 0.056
3 266975_at AT2G39380 ATEXO70H2, exocyst subunit exo70 family protein H2, EXO70H2, exocyst subunit exo70 family protein H2 0.650 0.345
4 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 0.622 -0.018
5 254249_at AT4G23280 CRK20, cysteine-rich RLK (RECEPTOR-like protein kinase) 20 0.530 0.222
6 267588_at AT2G42060 [Cysteine/Histidine-rich C1 domain family protein] 0.521 0.131
7 248700_at AT5G48400 ATGLR1.2, GLR1.2, GLUTAMATE RECEPTOR 1.2 0.517 0.316
8 256044_at AT1G07160 [Protein phosphatase 2C family protein] 0.505 0.024
9 249001_at AT5G44990 [Glutathione S-transferase family protein] 0.483 0.211
10 265208_at AT2G36690 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.467 0.325
11 249045_at AT5G44380 [FAD-binding Berberine family protein] 0.438 0.612
12 256370_at AT1G66780 [MATE efflux family protein] 0.437 0.126
13 263411_at AT2G28710 [C2H2-type zinc finger family protein] 0.399 0.373
14 254819_at AT4G12500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.394 1.094
15 245556_at AT4G15400 ABS1, ABNORMAL SHOOT 1, BIA1, BRASSINOSTEROID INACTIVATOR1 0.393 0.014
16 249618_at AT5G37490 [ARM repeat superfamily protein] 0.383 -0.010
17 263378_at AT2G40180 ATHPP2C5, phosphatase 2C5, PP2C5, phosphatase 2C5 0.382 0.257
18 260276_at AT1G80450 [VQ motif-containing protein] 0.368 0.697
19 251097_at AT5G01560 LecRK-VI.4, L-type lectin receptor kinase VI.4, LECRKA4.3, lectin receptor kinase a4.3 0.361 0.156
20 251832_at AT3G55150 ATEXO70H1, exocyst subunit exo70 family protein H1, EXO70H1, exocyst subunit exo70 family protein H1 0.353 0.012
21 252958_at AT4G38620 ATMYB4, myb domain protein 4, MYB4, myb domain protein 4 0.337 0.013
22 256192_at AT1G30110 ATNUDX25, nudix hydrolase homolog 25, NUDX25, nudix hydrolase homolog 25 0.332 0.014
23 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.314 0.117
24 253067_at AT4G37780 ATMYB87, MYB87, myb domain protein 87 0.301 0.048
25 261501_at AT1G28390 [Protein kinase superfamily protein] 0.298 0.295
26 258984_at AT3G08970 ATERDJ3A, TMS1, THERMOSENSITIVE MALE STERILE 1 0.293 -0.070
27 254060_at AT4G25350 SHB1, SHORT HYPOCOTYL UNDER BLUE1 0.290 0.102
28 260468_at AT1G11100 [SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related] 0.286 -0.024
29 254469_at AT4G20470 unknown 0.264 -0.007
30 257815_at AT3G25130 unknown 0.261 -0.281
31 258167_at AT3G21560 BRT1, Bright Trichomes 1, UGT84A2, UDP-glucosyl transferase 84A2 0.261 -0.317
32 248971_at AT5G45000 [Disease resistance protein (TIR-NBS-LRR class) family] 0.261 0.220
33 248896_at AT5G46350 ATWRKY8, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 8, WRKY8, WRKY DNA-binding protein 8 0.258 0.764
34 258336_at AT3G16050 A37, ATPDX1.2, ARABIDOPSIS THALIANA PYRIDOXINE BIOSYNTHESIS 1.2, PDX1.2, pyridoxine biosynthesis 1.2 0.257 -0.291
35 248703_at AT5G48430 [Eukaryotic aspartyl protease family protein] 0.254 0.500
36 248708_at AT5G48560 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.254 0.006
37 251096_at AT5G01550 LecRK-VI.3, L-type lectin receptor kinase VI.3, LECRKA4.2, lectin receptor kinase a4.1 0.251 0.299
38 263283_at AT2G36090 [F-box family protein] 0.250 0.138
39 263937_at AT2G35910 [RING/U-box superfamily protein] 0.250 0.044
40 254468_at AT4G20460 [NAD(P)-binding Rossmann-fold superfamily protein] 0.248 0.163
41 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.245 0.061
42 267384_at AT2G44370 [Cysteine/Histidine-rich C1 domain family protein] 0.245 0.514
43 246373_at AT1G51860 [Leucine-rich repeat protein kinase family protein] 0.244 0.266
44 248298_at AT5G53110 [RING/U-box superfamily protein] 0.243 0.404
45 258323_at AT3G22750 [Protein kinase superfamily protein] 0.242 -0.054
46 254964_at AT4G11080 3xHMG-box1, 3xHigh Mobility Group-box1 0.239 0.037
47 266757_at AT2G46940 unknown 0.235 0.079
48 260335_at AT1G74000 SS3, strictosidine synthase 3 0.229 0.237
49 252334_at AT3G48850 MPT2, mitochondrial phosphate transporter 2, PHT3;2, phosphate transporter 3;2 0.228 0.586
50 263797_at AT2G24570 ATWRKY17, WRKY17, WRKY DNA-binding protein 17 0.227 0.229
51 255568_at AT4G01250 AtWRKY22, WRKY22 0.223 0.542
52 251980_at AT3G53270 [Small nuclear RNA activating complex (SNAPc), subunit SNAP43 protein] 0.218 0.069
53 248306_at AT5G52830 ATWRKY27, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 27, WRKY27, WRKY DNA-binding protein 27 0.217 0.146
54 249779_at AT5G24230 [Lipase class 3-related protein] 0.215 0.133
55 251790_at AT3G55470 [Calcium-dependent lipid-binding (CaLB domain) family protein] 0.215 0.256
56 252414_at AT3G47420 AtG3Pp1, Glycerol-3-phosphate permease 1, ATPS3, phosphate starvation-induced gene 3, G3Pp1, Glycerol-3-phosphate permease 1, PS3, phosphate starvation-induced gene 3 0.214 -0.106
57 262090_at AT1G55970 HAC04, HAC4, histone acetyltransferase of the CBP family 4, HAC6, HISTONE ACETYLTRANSFERASE OF THE CBP FAMILY 6, HAG04, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 04, HAG4, HISTONE ACETYLTRANSFERASE OF THE GNAT/MYST SUPERFAMILY 4 0.214 -0.179
58 250499_at AT5G09730 ATBX3, ATBXL3, BETA-XYLOSIDASE 3, BX3, BXL3, beta-xylosidase 3, XYL3 0.211 -0.140
59 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.205 0.824
60 249032_at AT5G44910 [Toll-Interleukin-Resistance (TIR) domain family protein] 0.199 0.286
61 247014_at AT5G67630 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.199 0.021
62 259037_at AT3G09350 Fes1A, Fes1A 0.193 -0.110
63 245846_at AT1G26130 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.192 0.048
64 265852_at AT2G42350 [RING/U-box superfamily protein] 0.192 0.356
65 266581_at AT2G46140 [Late embryogenesis abundant protein] 0.191 0.321
66 250449_at AT5G10830 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.190 0.235
67 262548_at AT1G31280 AGO2, argonaute 2, AtAGO2 0.190 -0.221
68 252311_at AT3G49370 [Calcium-dependent protein kinase (CDPK) family protein] 0.183 0.185
69 260392_at AT1G74030 ENO1, enolase 1 0.182 0.179
70 256177_at AT1G51620 [Protein kinase superfamily protein] 0.182 0.394
71 265306_at AT2G20320 [DENN (AEX-3) domain-containing protein] 0.181 0.138
72 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 0.176 0.971
73 250448_at AT5G10820 [Major facilitator superfamily protein] 0.175 0.279
74 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.409 -0.438
75 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A -0.350 0.837
76 255774_at AT1G18620 TRM3, TON1 Recruiting Motif 3 -0.290 -0.463
77 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 -0.275 0.027
78 258804_at AT3G04760 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.257 -0.179
79 256870_at AT3G26300 CYP71B34, cytochrome P450, family 71, subfamily B, polypeptide 34 -0.251 -0.142
80 255436_at AT4G03150 unknown -0.245 -0.236
81 258742_at AT3G05800 AIF1, AtBS1(activation-tagged BRI1 suppressor 1)-interacting factor 1 -0.245 0.447
82 249472_at AT5G39210 CRR7, CHLORORESPIRATORY REDUCTION 7 -0.243 -0.420
83 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] -0.242 -0.553
84 258263_at AT3G15780 unknown -0.241 0.028
85 248095_at AT5G55230 ATMAP65-1, microtubule-associated proteins 65-1, MAP65-1, MAP65-1, microtubule-associated proteins 65-1 -0.239 -0.213
86 247422_at AT5G62810 ATPEX14, PED2, PEROXISOME DEFECTIVE 2, PEX14, peroxin 14 -0.223 -0.167
87 262882_at AT1G64900 CYP89, CYP89A2, cytochrome P450, family 89, subfamily A, polypeptide 2 -0.221 0.071
88 260347_at AT1G69420 [DHHC-type zinc finger family protein] -0.216 -0.300
89 246995_at AT5G67470 ATFH6, ARABIDOPSIS FORMIN HOMOLOG 6, FH6, formin homolog 6 -0.210 -0.261
90 264930_at AT1G60800 AtNIK3, NIK3, NSP-interacting kinase 3 -0.209 -0.499
91 255913_at AT1G66980 GDPDL2, Glycerophosphodiester phosphodiesterase (GDPD) like 2, SNC4, suppressor of npr1-1 constitutive 4 -0.206 -0.012
92 262728_at AT1G75820 ATCLV1, CLV1, CLAVATA 1, FAS3, FASCIATA 3, FLO5, FLOWER DEVELOPMENT 5 -0.205 -0.117
93 260266_at AT1G68520 BBX14, B-box domain protein 14 -0.204 -0.459
94 264696_at AT1G70230 AXY4, ALTERED XYLOGLUCAN 4, TBL27, TRICHOME BIREFRINGENCE-LIKE 27 -0.203 -0.065
95 260799_at AT1G78270 AtUGT85A4, UDP-glucosyl transferase 85A4, UGT85A4, UDP-glucosyl transferase 85A4 -0.203 -0.026
96 261608_at AT1G49650 [alpha/beta-Hydrolases superfamily protein] -0.200 0.145
97 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 -0.199 -0.239
98 255128_at AT4G08310 unknown -0.197 -0.050
99 264442_at AT1G27480 [alpha/beta-Hydrolases superfamily protein] -0.197 -0.379
100 245352_at AT4G15490 UGT84A3 -0.196 0.344
101 257294_at AT3G15570 [Phototropic-responsive NPH3 family protein] -0.192 -0.361
102 264704_at AT1G70090 GATL9, GALACTURONOSYLTRANSFERASE-LIKE 9, LGT8, glucosyl transferase family 8 -0.189 -0.156
103 251413_at AT3G60320 unknown -0.187 -0.289
104 257137_at AT3G28860 ABCB19, ATP-binding cassette B19, ATABCB19, Arabidopsis thaliana ATP-binding cassette B19, ATMDR1, ATMDR11, MULTIDRUG RESISTANCE PROTEIN 11, ATPGP19, MDR1, MDR11, PGP19, P-GLYCOPROTEIN 19 -0.185 -0.168
105 246313_at AT1G31920 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.184 -0.368
106 259207_at AT3G09050 unknown -0.183 -0.265
107 252433_at AT3G47560 [alpha/beta-Hydrolases superfamily protein] -0.180 -0.184
108 259958_at AT1G53730 SRF6, STRUBBELIG-receptor family 6 -0.178 -0.323
109 260465_at AT1G10910 EMB3103, EMBRYO DEFECTIVE 3103 -0.177 -0.291
110 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 -0.177 -0.254
111 252199_at AT3G50270 [HXXXD-type acyl-transferase family protein] -0.175 0.104
112 267532_at AT2G42040 unknown -0.175 -0.109
113 259017_at AT3G07310 unknown -0.175 -0.179
114 263598_at AT2G01850 ATXTH27, EXGT-A3, endoxyloglucan transferase A3, XTH27, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 27 -0.174 -0.024
115 257879_at AT3G17160 unknown -0.173 -0.157
116 265939_at AT2G19650 [Cysteine/Histidine-rich C1 domain family protein] -0.170 -0.316
117 250865_at AT5G03900 [Iron-sulphur cluster biosynthesis family protein] -0.167 -0.163
118 257932_at AT3G17040 HCF107, high chlorophyll fluorescent 107 -0.167 -0.220
119 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] -0.164 0.698
120 257374_at AT2G43280 [Far-red impaired responsive (FAR1) family protein] -0.164 0.018
121 245347_at AT4G14890 FdC1, ferredoxin C 1 -0.163 -0.196
122 256805_at AT3G20930 ORRM1, Organelle RRM protein 1 -0.163 -0.130
123 265266_at AT2G42890 AML2, MEI2-like 2, ML2, MEI2-like 2 -0.163 0.013
124 247156_at AT5G65760 [Serine carboxypeptidase S28 family protein] -0.159 -0.024
125 256573_at AT3G14860 [NHL domain-containing protein] -0.156 -0.082
126 249216_at AT5G42240 scpl42, serine carboxypeptidase-like 42 -0.156 -0.105
127 252277_at AT3G49470 NACA2, nascent polypeptide-associated complex subunit alpha-like protein 2 -0.156 -0.146
128 245123_at AT2G47450 CAO, CHAOS, CPSRP43, CHLOROPLAST SIGNAL RECOGNITION PARTICLE 43 -0.153 -0.128
129 263067_at AT2G17550 TRM26, TON1 Recruiting Motif 26 -0.153 -0.121
130 262383_at AT1G72940 [Toll-Interleukin-Resistance (TIR) domain-containing protein] -0.152 0.139
131 253218_at AT4G34980 SLP2, subtilisin-like serine protease 2 -0.151 -0.229
132 259677_at AT1G77740 PIP5K2, phosphatidylinositol-4-phosphate 5-kinase 2 -0.150 -0.143
133 249849_at AT5G23230 NIC2, nicotinamidase 2 -0.150 0.170
134 262850_at AT1G14920 GAI, GIBBERELLIC ACID INSENSITIVE, RGA2, RESTORATION ON GROWTH ON AMMONIA 2 -0.150 -0.135
135 257771_at AT3G23000 ATSR2, ATSRPK1, CIPK7, CBL-interacting protein kinase 7, PKS7, SnRK3.10, SNF1-RELATED PROTEIN KINASE 3.10 -0.148 -0.234
136 252077_at AT3G51720 unknown -0.147 -0.222
137 264501_at AT1G09390 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.145 -0.173
138 255041_at AT4G09620 [Mitochondrial transcription termination factor family protein] -0.145 -0.146
139 256516_at AT1G66150 TMK1, transmembrane kinase 1 -0.143 -0.163
140 261337_at AT1G44810 [DNA-binding storekeeper protein-related transcriptional regulator] -0.143 -0.064
141 254860_at AT4G12110 ATSMO1-1, SMO1-1, sterol-4alpha-methyl oxidase 1-1 -0.142 -0.071
142 260511_at AT1G51570 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein -0.142 -0.267
143 263606_at AT2G16280 KCS9, 3-ketoacyl-CoA synthase 9 -0.138 -0.188
144 258250_at AT3G15850 ADS3, AtADS3, FAD5, fatty acid desaturase 5, FADB, FATTY ACID DESATURASE B, JB67 -0.138 -0.284
145 253185_at AT4G35240 unknown -0.138 -0.225