4.0:Information of module
Shoot -K
In comparison with Elevated CO2 fully expanded leaf help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 4.977e-40
GO:0010033 response to organic substance BP 2.067e-39
GO:0009719 response to endogenous stimulus BP 3.296e-37
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006081 cellular aldehyde metabolic process BP 3.148e-16
GO:0019682 glyceraldehyde-3-phosphate metabolic pro... BP 7.586e-16
GO:0044281 small molecule metabolic process BP 4.295e-14
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Shoot -K		 Log2 signal ratio
Elevated CO2 fully expanded leaf
1 252136_at AT3G50770 CML41, calmodulin-like 41 1.076 0.233
2 258947_at AT3G01830 [Calcium-binding EF-hand family protein] 1.030 0.291
3 248333_at AT5G52390 [PAR1 protein] 1.017 0.369
4 254101_at AT4G25000 AMY1, alpha-amylase-like, ATAMY1 1.007 0.035
5 260881_at AT1G21550 [Calcium-binding EF-hand family protein] 0.979 0.151
6 255341_at AT4G04500 CRK37, cysteine-rich RLK (RECEPTOR-like protein kinase) 37 0.947 0.204
7 252102_at AT3G50970 LTI30, LOW TEMPERATURE-INDUCED 30, XERO2 0.925 0.094
8 245840_at AT1G58420 [Uncharacterised conserved protein UCP031279] 0.906 0.210
9 264580_at AT1G05340 unknown 0.892 0.159
10 250090_at AT5G17330 GAD, glutamate decarboxylase, GAD1, GLUTAMATE DECARBOXYLASE 1 0.878 0.181
11 249626_at AT5G37540 [Eukaryotic aspartyl protease family protein] 0.873 0.054
12 266545_at AT2G35290 SAUR79, SMALL AUXIN UPREGULATED RNA 79 0.843 0.062
13 265853_at AT2G42360 [RING/U-box superfamily protein] 0.838 0.184
14 260804_at AT1G78410 [VQ motif-containing protein] 0.831 0.270
15 249940_at AT5G22380 anac090, NAC domain containing protein 90, NAC090, NAC domain containing protein 90 0.820 0.158
16 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.801 0.048
17 247314_at AT5G64000 ATSAL2, SAL2 0.799 0.190
18 254667_at AT4G18280 [glycine-rich cell wall protein-related] 0.790 0.120
19 247095_at AT5G66400 ATDI8, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, RAB18, RESPONSIVE TO ABA 18 0.784 -0.128
20 254229_at AT4G23610 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.783 0.170
21 259850_at AT1G72240 unknown 0.777 0.161
22 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 0.768 0.355
23 261366_at AT1G53100 [Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein] 0.762 0.051
24 254490_at AT4G20320 [CTP synthase family protein] 0.761 0.114
25 246842_at AT5G26731 unknown 0.745 0.139
26 250344_at AT5G11930 [Thioredoxin superfamily protein] 0.743 0.201
27 258203_at AT3G13950 unknown 0.739 0.338
28 248466_at AT5G50720 ATHVA22E, ARABIDOPSIS THALIANA HVA22 HOMOLOGUE E, HVA22E, HVA22 homologue E 0.735 -0.030
29 262930_at AT1G65690 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.734 0.200
30 255941_at AT1G20350 ATTIM17-1, translocase inner membrane subunit 17-1, TIM17-1, translocase inner membrane subunit 17-1 0.715 0.197
31 262518_at AT1G17170 ATGSTU24, glutathione S-transferase TAU 24, GST, Arabidopsis thaliana Glutathione S-transferase (class tau) 24, GSTU24, glutathione S-transferase TAU 24 0.708 0.206
32 246272_at AT4G37150 ATMES9, ARABIDOPSIS THALIANA METHYL ESTERASE 9, MES9, methyl esterase 9 0.699 0.071
33 248322_at AT5G52760 [Copper transport protein family] 0.696 0.125
34 260005_at AT1G67920 unknown 0.689 0.241
35 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] 0.686 0.020
36 252437_at AT3G47380 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.679 0.052
37 265214_at AT1G05000 AtPFA-DSP1, PFA-DSP1, plant and fungi atypical dual-specificity phosphatase 1 0.678 0.093
38 253632_at AT4G30430 TET9, tetraspanin9 0.677 0.009
39 247487_at AT5G62150 [peptidoglycan-binding LysM domain-containing protein] 0.673 0.079
40 252068_at AT3G51440 [Calcium-dependent phosphotriesterase superfamily protein] 0.673 0.190
41 258209_at AT3G14060 unknown 0.672 -0.060
42 250286_at AT5G13320 AtGH3.12, GDG1, GH3-LIKE DEFENSE GENE 1, GH3.12, GRETCHEN HAGEN 3.12, PBS3, AVRPPHB SUSCEPTIBLE 3, WIN3, HOPW1-1-INTERACTING 3 0.664 0.206
43 266778_at AT2G29090 CYP707A2, cytochrome P450, family 707, subfamily A, polypeptide 2 0.663 0.144
44 260405_at AT1G69930 ATGSTU11, glutathione S-transferase TAU 11, GSTU11, glutathione S-transferase TAU 11 0.658 0.032
45 256252_at AT3G11340 UGT76B1, UDP-dependent glycosyltransferase 76B1 0.657 0.191
46 248819_at AT5G47050 [SBP (S-ribonuclease binding protein) family protein] 0.657 -0.076
47 267546_at AT2G32680 AtRLP23, receptor like protein 23, RLP23, receptor like protein 23 0.652 0.203
48 246125_at AT5G19875 unknown 0.652 0.132
49 250983_at AT5G02780 GSTL1, glutathione transferase lambda 1 0.648 0.268
50 264866_at AT1G24140 [Matrixin family protein] 0.646 0.171
51 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.644 0.275
52 255630_at AT4G00700 [C2 calcium/lipid-binding plant phosphoribosyltransferase family protein] 0.641 0.238
53 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.638 0.395
54 253608_at AT4G30290 ATXTH19, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 19, XTH19, xyloglucan endotransglucosylase/hydrolase 19 0.635 0.070
55 267565_at AT2G30750 CYP71A12, cytochrome P450, family 71, subfamily A, polypeptide 12 0.634 0.189
56 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 0.627 0.025
57 249417_at AT5G39670 [Calcium-binding EF-hand family protein] 0.627 0.158
58 264729_at AT1G22990 HIPP22, heavy metal associated isoprenylated plant protein 22 0.624 0.013
59 246302_at AT3G51860 ATCAX3, ATHCX1, CAX1-LIKE, CAX3, cation exchanger 3 0.623 0.195
60 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 0.620 0.081
61 256877_at AT3G26470 [Powdery mildew resistance protein, RPW8 domain] 0.617 0.131
62 252214_at AT3G50260 ATERF#011, CEJ1, cooperatively regulated by ethylene and jasmonate 1, DEAR1, DREB AND EAR MOTIF PROTEIN 1 0.613 0.153
63 259410_at AT1G13340 [Regulator of Vps4 activity in the MVB pathway protein] 0.609 0.213
64 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.607 0.156
65 254178_at AT4G23880 unknown 0.595 0.122
66 265725_at AT2G32030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.594 0.070
67 266799_at AT2G22860 ATPSK2, phytosulfokine 2 precursor, PSK2, phytosulfokine 2 precursor 0.594 0.071
68 265672_at AT2G31980 AtCYS2, PHYTOCYSTATIN 2, CYS2, PHYTOCYSTATIN 2 0.592 -0.041
69 262229_at AT1G68620 [alpha/beta-Hydrolases superfamily protein] 0.591 0.157
70 247109_at AT5G65870 ATPSK5, phytosulfokine 5 precursor, PSK5, PSK5, phytosulfokine 5 precursor 0.583 -0.001
71 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.580 0.040
72 251176_at AT3G63380 [ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein] 0.578 0.154
73 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.577 0.258
74 262482_at AT1G17020 ATSRG1, SENESCENCE-RELATED GENE 1, SRG1, senescence-related gene 1 0.577 0.049
75 256647_at AT3G13610 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein 0.569 0.256
76 259655_at AT1G55210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.566 0.077
77 250724_at AT5G06330 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.561 0.022
78 256114_at AT1G16850 unknown 0.560 0.063
79 250646_at AT5G06720 ATPA2, peroxidase 2, AtPRX53, PA2, peroxidase 2, PRX53, peroxidase 53 0.560 0.195
80 249096_at AT5G43910 [pfkB-like carbohydrate kinase family protein] 0.560 0.114
81 262703_at AT1G16510 SAUR41, SMALL AUXIN UPREGULATED 41 0.552 0.167
82 251137_at AT5G01300 [PEBP (phosphatidylethanolamine-binding protein) family protein] 0.550 0.007
83 246821_at AT5G26920 CBP60G, Cam-binding protein 60-like G 0.549 0.120
84 263411_at AT2G28710 [C2H2-type zinc finger family protein] 0.545 0.034
85 254869_at AT4G11890 ARCK1, ABA- AND OSMOTIC-STRESS-INDUCIBLE RECEPTOR-LIKE CYTOSOLIC KINASE1, CRK45, cysteine-rich receptor-like protein kinase 45 0.543 0.181
86 256839_at AT3G22930 AtCML11, CML11, calmodulin-like 11 0.539 0.131
87 260581_at AT2G47190 ATMYB2, MYB DOMAIN PROTEIN 2, MYB2, myb domain protein 2 0.538 0.007
88 266462_at AT2G47770 ATTSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related, TSPO, TSPO(outer membrane tryptophan-rich sensory protein)-related 0.535 0.050
89 247047_at AT5G66650 unknown 0.534 0.015
90 245982_at AT5G13170 AtSWEET15, SAG29, senescence-associated gene 29, SWEET15 0.527 0.063
91 252421_at AT3G47540 [Chitinase family protein] 0.525 0.069
92 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.525 0.124
93 259507_at AT1G43910 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.520 0.214
94 257964_at AT3G19850 [Phototropic-responsive NPH3 family protein] -0.801 -0.053
95 261873_at AT1G11350 CBRLK1, CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, RKS2, SD1-13, S-domain-1 13 -0.611 -0.007
96 253423_at AT4G32280 IAA29, indole-3-acetic acid inducible 29 -0.562 -0.070
97 248895_at AT5G46330 FLS2, FLAGELLIN-SENSITIVE 2 -0.523 0.047
98 257895_at AT3G16950 LPD1, lipoamide dehydrogenase 1, ptlpd1 -0.507 -0.076
99 251013_at AT5G02540 [NAD(P)-binding Rossmann-fold superfamily protein] -0.486 -0.092
100 247780_at AT5G58770 AtcPT4, cPT4, cis-prenyltransferase 4 -0.462 0.041
101 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 -0.452 -0.030
102 251402_at AT3G60290 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.452 -0.018
103 247348_at AT5G63810 AtBGAL10, Arabidopsis thaliana beta-galactosidase 10, BGAL10, beta-galactosidase 10 -0.444 -0.057
104 255652_at AT4G00950 MEE47, maternal effect embryo arrest 47 -0.437 -0.031
105 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 -0.432 -0.086
106 256060_at AT1G07050 [CCT motif family protein] -0.420 -0.054
107 261043_at AT1G01220 AtFKGP, Arabidopsis thaliana L-fucokinase/GDP-L-fucose pyrophosphorylase, FKGP, L-fucokinase/GDP-L-fucose pyrophosphorylase -0.416 -0.029
108 252391_at AT3G47860 CHL, chloroplastic lipocalin -0.413 -0.046
109 258708_at AT3G09580 [FAD/NAD(P)-binding oxidoreductase family protein] -0.412 -0.040
110 267556_at AT2G32810 BGAL9, beta galactosidase 9, BGAL9, beta-galactosidase 9 -0.410 -0.033
111 248624_at AT5G48790 unknown -0.403 -0.037
112 246483_at AT5G16000 AtNIK1, NIK1, NSP-interacting kinase 1 -0.403 -0.079
113 254553_at AT4G19530 [disease resistance protein (TIR-NBS-LRR class) family] -0.403 -0.030
114 265414_at AT2G16660 [Major facilitator superfamily protein] -0.395 0.065
115 254218_at AT4G23740 [Leucine-rich repeat protein kinase family protein] -0.392 -0.065
116 248404_at AT5G51460 ATTPPA, TPPA, trehalose-6-phosphate phosphatase A -0.382 -0.001
117 264508_at AT1G09570 FHY2, FAR RED ELONGATED HYPOCOTYL 2, FRE1, FAR RED ELONGATED 1, HY8, ELONGATED HYPOCOTYL 8, PHYA, phytochrome A -0.379 -0.038
118 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.378 -0.089
119 251629_at AT3G57410 ATVLN3, VLN3, villin 3 -0.376 -0.042
120 263883_at AT2G21830 [Cysteine/Histidine-rich C1 domain family protein] -0.373 -0.038
121 250613_at AT5G07240 IQD24, IQ-domain 24 -0.372 -0.014
122 246371_at AT1G51940 LYK3, LysM-containing receptor-like kinase 3 -0.367 -0.033
123 248994_at AT5G45250 RPS4, RESISTANT TO P. SYRINGAE 4 -0.362 0.023
124 260974_at AT1G53440 [Leucine-rich repeat transmembrane protein kinase] -0.360 -0.009
125 263499_at AT2G42580 TTL3, tetratricopetide-repeat thioredoxin-like 3, VIT, VHI-INTERACTING TPR CONTAINING PROTEIN -0.359 -0.030
126 256772_at AT3G13750 BGAL1, beta galactosidase 1, BGAL1, beta-galactosidase 1 -0.348 -0.068
127 261395_at AT1G79700 WRI4, WRINKLED 4 -0.345 -0.059
128 261926_at AT1G22530 PATL2, PATELLIN 2 -0.343 -0.010
129 253947_at AT4G26760 MAP65-2, microtubule-associated protein 65-2 -0.343 -0.048
130 259104_at AT3G02170 LNG2, LONGIFOLIA2, TRM1, TON1 Recruiting Motif 1 -0.343 -0.065
131 250885_at AT5G03910 ABCB29, ATP-binding cassette B29, ATATH12, ARABIDOPSIS THALIANA ABC TRANSPORTER HOMOLOG 12, ATH12, ABC2 homolog 12 -0.341 -0.033
132 263612_at AT2G16440 MCM4, MINICHROMOSOME MAINTENANCE 4 -0.330 0.023
133 264990_at AT1G27210 [ARM repeat superfamily protein] -0.327 -0.087
134 256503_at AT1G75250 ATRL6, RAD-like 6, RL6, RAD-like 6, RSM3, RADIALIS-LIKE SANT/MYB 3 -0.324 -0.083
135 267606_at AT2G26640 KCS11, 3-ketoacyl-CoA synthase 11 -0.323 -0.056
136 258156_at AT3G18050 unknown -0.323 -0.052
137 264568_at AT1G05150 [Calcium-binding tetratricopeptide family protein] -0.322 -0.022
138 258006_at AT3G19400 [Cysteine proteinases superfamily protein] -0.320 -0.021
139 267465_at AT2G19170 SLP3, subtilisin-like serine protease 3 -0.319 -0.060
140 251996_at AT3G52840 BGAL2, beta-galactosidase 2 -0.319 -0.045
141 264521_at AT1G10020 unknown -0.318 0.009
142 260041_at AT1G68780 [RNI-like superfamily protein] -0.313 0.017
143 257651_at AT3G16850 [Pectin lyase-like superfamily protein] -0.309 -0.069
144 245696_at AT5G04190 PKS4, phytochrome kinase substrate 4 -0.307 -0.018
145 254221_at AT4G23820 [Pectin lyase-like superfamily protein] -0.306 -0.048
146 253337_at AT4G33470 ATHDA14, HDA14, histone deacetylase 14 -0.299 -0.048
147 255540_at AT4G01800 AGY1, Albino or Glassy Yellow 1, AtcpSecA, Arabidopsis thaliana chloroplast SecA, SECA1 -0.299 -0.042
148 260603_at AT1G55960 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.298 -0.010
149 257772_at AT3G23080 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.298 -0.027
150 267310_at AT2G34680 AIR9, AUXIN-INDUCED IN ROOT CULTURES 9 -0.297 -0.057
151 266302_at AT2G27050 AtEIL1, EIL1, ETHYLENE-INSENSITIVE3-like 1 -0.296 -0.035
152 252543_at AT3G45780 JK224, NPH1, NONPHOTOTROPIC HYPOCOTYL 1, PHOT1, phototropin 1, RPT1, ROOT PHOTOTROPISM 1 -0.295 -0.034
153 248177_at AT5G54630 [zinc finger protein-related] -0.294 -0.020
154 260152_at AT1G52830 IAA6, indole-3-acetic acid 6, SHY1, SHORT HYPOCOTYL 1 -0.293 -0.125
155 261783_at AT1G08190 ATVAM2, ATVPS41, VACUOLAR PROTEIN SORTING 41, VAM2, VPS41, vacuolar protein sorting 41, ZIP2, ZIGZAG SUPPRESSOR 2 -0.292 -0.040
156 263957_at AT2G35880 [TPX2 (targeting protein for Xklp2) protein family] -0.292 -0.062
157 261801_at AT1G30520 AAE14, acyl-activating enzyme 14 -0.292 -0.124
158 249354_at AT5G40480 EMB3012, embryo defective 3012 -0.292 -0.021
159 260465_at AT1G10910 EMB3103, EMBRYO DEFECTIVE 3103 -0.292 -0.053
160 258537_at AT3G04210 [Disease resistance protein (TIR-NBS class)] -0.289 0.044
161 253533_at AT4G31590 ATCSLC05, CELLULOSE-SYNTHASE LIKE C5, ATCSLC5, Cellulose-synthase-like C5, CSLC05, CELLULOSE-SYNTHASE LIKE C5, CSLC5, Cellulose-synthase-like C5 -0.287 -0.066
162 245176_at AT2G47440 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.286 -0.017
163 259083_at AT3G04810 ATNEK2, NIMA-related kinase 2, NEK2, NIMA-related kinase 2 -0.286 -0.066
164 254815_at AT4G12420 SKU5 -0.284 -0.048
165 249742_at AT5G24490 [30S ribosomal protein, putative] -0.283 -0.041
166 261834_at AT1G10640 [Pectin lyase-like superfamily protein] -0.283 -0.154
167 266642_at AT2G35410 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.282 -0.030
168 266489_at AT2G35190 ATNPSN11, NPSN11, novel plant snare 11, NSPN11 -0.281 -0.065
169 263558_at AT2G16380 [Sec14p-like phosphatidylinositol transfer family protein] -0.280 -0.009
170 250102_at AT5G16590 LRR1, Leucine rich repeat protein 1 -0.280 -0.033
171 263805_at AT2G40400 unknown -0.280 -0.037
172 254089_at AT4G24800 ECIP1, EIN2 C-terminus Interacting Protein 1 -0.276 -0.048
173 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.276 -0.032
174 267532_at AT2G42040 unknown -0.274 -0.057
175 255513_at AT4G02060 MCM7, PRL, PROLIFERA -0.274 0.032
176 266509_at AT2G47940 DEG2, degradation of periplasmic proteins 2, DEGP2, DEGP protease 2, EMB3117, EMBRYO DEFECTIVE 3117 -0.273 -0.049
177 246288_at AT1G31850 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.272 -0.085
178 261451_at AT1G21060 unknown -0.272 -0.118
179 245265_at AT4G14400 ACD6, ACCELERATED CELL DEATH 6 -0.270 0.067
180 266899_at AT2G34620 [Mitochondrial transcription termination factor family protein] -0.266 -0.090
181 263163_at AT1G03160 FZL, FZO-like -0.264 -0.051
182 249327_at AT5G40890 ATCLC-A, chloride channel A, ATCLCA, CLC-A, chloride channel A, CLC-A, CHLORIDE CHANNEL-A, CLCA, CHLORIDE CHANNEL A -0.262 -0.048
183 255617_at AT4G01330 [Protein kinase superfamily protein] -0.261 -0.049
184 251261_at AT3G62110 [Pectin lyase-like superfamily protein] -0.259 -0.030
185 264783_at AT1G08650 ATPPCK1, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 1, PPCK1, phosphoenolpyruvate carboxylase kinase 1 -0.257 0.081