4.0:Information of module
Pst-DC3000(hrpA)-4hpi
In comparison with pif4pif5 mut dark help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0042545 cell wall modification BP 2.957e-05
GO:0071555 cell wall organization BP 2.973e-04
GO:0071554 cell wall organization or biogenesis BP 7.301e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006505 GPI anchor metabolic process BP 1.920e-02
GO:0009636 response to toxic substance BP 2.586e-02
GO:0042127 regulation of cell proliferation BP 2.595e-02
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Pst-DC3000(hrpA)-4hpi		 Log2 signal ratio
pif4pif5 mut dark
1 255186_at AT4G07750 [CACTA-like transposase family (Tnp2/En/Spm), has a 2.9e-168 P-value blast match to gb|AAG52024.1|AC022456_5 Tam1-homologous transposon protein TNP2, putative] 0.662 -0.173
2 247297_at AT5G64100 [Peroxidase superfamily protein] 0.237 0.015
3 257779_at AT3G26940 CDG1, CONSTITUTIVE DIFFERENTIAL GROWTH 1 0.225 -0.099
4 253527_at AT4G31470 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.223 -0.071
5 262002_at AT1G64450 [Glycine-rich protein family] 0.211 0.032
6 263154_at AT1G54110 [Membrane fusion protein Use1] 0.205 -0.006
7 250638_at AT5G07540 ATGRP-6, ATGRP16, GRP16, glycine-rich protein 16 0.204 -0.159
8 259262_at AT3G01020 ATISU2, ISCU-LIKE 2, ISU2, ISCU-like 2 0.201 -0.112
9 247958_at AT5G57070 [hydroxyproline-rich glycoprotein family protein] 0.195 -0.018
10 254323_at AT4G22620 SAUR34, SMALL AUXIN UPREGULATED RNA 34 0.195 -0.018
11 255581_at AT4G01490 [non-LTR retrotransposon family (LINE), has a 2.4e-44 P-value blast match to GB:AAB41224 ORF2 (LINE-element) (Rattus norvegicus)] 0.191 -0.072
12 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 0.191 -0.065
13 249648_at AT5G37050 unknown 0.191 -0.050
14 246697_at AT5G29210 unknown 0.190 -0.060
15 260158_at AT1G79910 [Regulator of Vps4 activity in the MVB pathway protein] 0.190 -0.176
16 246637_at AT5G34870 [zinc knuckle (CCHC-type) family protein] 0.189 -0.059
17 266330_at AT2G01530 MLP329, MLP-like protein 329, ZCE2, (Zusammen-CA)-enhanced 2 0.188 -0.026
18 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.188 -0.012
19 267372_at AT2G26290 ARSK1, root-specific kinase 1 0.179 -0.103
20 266917_at AT2G45830 DTA2, downstream target of AGL15 2 0.177 -0.085
21 266764_at AT2G47050 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.176 -0.061
22 247128_at AT5G66110 HIPP27, heavy metal associated isoprenylated plant protein 27 0.169 -0.057
23 248257_at AT5G53410 unknown 0.169 -0.143
24 266088_at AT2G37780 [Cysteine/Histidine-rich C1 domain family protein] 0.168 -0.082
25 256521_at AT1G66120 AAE11, acyl-activating enzyme 11, AtAAE11 0.168 -0.117
26 260888_at AT1G29140 [Pollen Ole e 1 allergen and extensin family protein] 0.166 -0.212
27 262585_at AT1G15460 ATBOR4, ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, BOR4, REQUIRES HIGH BORON 4 0.164 -0.029
28 253681_at AT4G29630 [Cytidine/deoxycytidylate deaminase family protein] 0.162 -0.072
29 252510_at AT3G46270 [receptor protein kinase-related] 0.159 -0.071
30 259781_at AT1G29650 [non-LTR retrotransposon family (LINE), has a 1.5e-28 P-value blast match to GB:NP_038603 L1 repeat, Tf subfamily, member 23 (LINE-element) (Mus musculus)] 0.158 -0.026
31 267610_at AT2G26650 AKT1, K+ transporter 1, ATAKT1, KT1, K+ transporter 1 0.157 -0.042
32 259078_at AT3G05040 HST, HASTY, HST1, HASTY 1 -0.172 0.055
33 261271_at AT1G26795 [Plant self-incompatibility protein S1 family] -0.164 0.019
34 261681_at AT1G47340 [F-box and associated interaction domains-containing protein] -0.162 -0.001
35 267564_at AT2G30740 [Protein kinase superfamily protein] -0.154 -0.049
36 253835_at AT4G27820 BGLU9, beta glucosidase 9 -0.153 -0.014
37 255599_at AT4G01010 ATCNGC13, CYCLIC NUCLEOTIDE-GATED CHANNEL 13, CNGC13, cyclic nucleotide-gated channel 13 -0.144 0.038
38 255402_at AT4G03205 hemf2 -0.142 0.055
39 246464_at AT5G16980 [Zinc-binding dehydrogenase family protein] -0.139 -0.076
40 247408_at AT5G62760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.134 -0.020
41 266962_at AT2G39435 TRM18, TON1 Recruiting Motif 18 -0.133 -0.035
42 247985_at AT5G56790 [Protein kinase superfamily protein] -0.133 0.036
43 262653_at AT1G14130 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.130 -0.042
44 264393_at AT1G11880 [transferases, transferring hexosyl groups] -0.129 0.042
45 260041_at AT1G68780 [RNI-like superfamily protein] -0.126 0.174
46 247746_at AT5G58970 ATUCP2, uncoupling protein 2, UCP2, uncoupling protein 2 -0.121 -0.015
47 261255_at AT1G05900 ATNTH2, NTH2, endonuclease III 2 -0.118 0.035
48 249647_at AT5G37040 [F-box family protein] -0.117 0.062
49 257270_at AT3G28140 [RNA ligase/cyclic nucleotide phosphodiesterase family protein] -0.117 0.032
50 252023_at AT3G52920 unknown -0.117 -0.010
51 251903_at AT3G54120 [Reticulon family protein] -0.116 0.093
52 259784_at AT1G29450 SAUR64, SMALL AUXIN UPREGULATED RNA 64 -0.112 -0.015
53 266760_at AT2G46870 NGA1, NGATHA1 -0.110 -0.026
54 266333_at AT2G32410 AXL, AXR1-like, AXL1, AXR1- like 1 -0.108 0.010
55 265267_at AT2G42920 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.107 0.050
56 250642_at AT5G07180 ERL2, ERECTA-like 2 -0.107 0.034
57 260098_at AT1G73320 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.105 0.099
58 247687_at AT5G59740 [UDP-N-acetylglucosamine (UAA) transporter family] -0.104 0.093
59 256412_at AT3G11220 ELO1, ELONGATA 1 -0.102 -0.024
60 263465_at AT2G31940 unknown -0.100 0.018
61 254611_at AT4G19095 unknown -0.098 0.007