4.0:Information of module
Pst-DC3000(avrRpm1)-4hpi
In comparison with Red/FR Light45min help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009753 response to jasmonic acid BP 5.434e-59
GO:0009719 response to endogenous stimulus BP 5.583e-57
GO:0009611 response to wounding BP 7.485e-55
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0048509 regulation of meristem development BP 3.262e-05
GO:0048638 regulation of developmental growth BP 7.194e-05
GO:0040008 regulation of growth BP 7.757e-05
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
Pst-DC3000(avrRpm1)-4hpi		 Log2 signal ratio
Red/FR Light45min
1 264415_at AT1G43160 RAP2.6, related to AP2 6 0.894 0.049
2 256159_at AT1G30135 JAZ8, jasmonate-zim-domain protein 8, TIFY5A 0.845 0.014
3 264886_at AT1G61120 GES, GERANYLLINALOOL SYNTHASE, TPS04, terpene synthase 04, TPS4, TERPENE SYNTHASE 4 0.794 0.008
4 257835_at AT3G25180 CYP82G1, cytochrome P450, family 82, subfamily G, polypeptide 1 0.724 -0.005
5 245209_at AT5G12340 unknown 0.723 -0.070
6 253697_at AT4G29700 [Alkaline-phosphatase-like family protein] 0.710 -0.007
7 261037_at AT1G17420 ATLOX3, Arabidopsis thaliana lipoxygenase 3, LOX3, lipoxygenase 3 0.705 -0.014
8 249071_at AT5G44050 [MATE efflux family protein] 0.691 -0.053
9 252265_at AT3G49620 DIN11, DARK INDUCIBLE 11 0.679 0.030
10 263161_at AT1G54020 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.677 -0.019
11 250292_at AT5G13220 JAS1, JASMONATE-ASSOCIATED 1, JAZ10, jasmonate-zim-domain protein 10, TIFY9, TIFY DOMAIN PROTEIN 9 0.669 -0.024
12 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.657 0.053
13 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.654 0.020
14 266800_at AT2G22880 [VQ motif-containing protein] 0.649 -0.020
15 254996_at AT4G10390 [Protein kinase superfamily protein] 0.636 0.008
16 266246_at AT2G27690 CYP94C1, cytochrome P450, family 94, subfamily C, polypeptide 1 0.635 0.053
17 260399_at AT1G72520 ATLOX4, Arabidopsis thaliana lipoxygenase 4, LOX4, lipoxygenase 4 0.622 -0.013
18 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 0.612 0.016
19 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.608 -0.070
20 261033_at AT1G17380 JAZ5, jasmonate-zim-domain protein 5, TIFY11A 0.601 0.007
21 255527_at AT4G02360 unknown 0.601 0.002
22 266271_at AT2G29440 ATGSTU6, glutathione S-transferase tau 6, GST24, GLUTATHIONE S-TRANSFERASE 24, GSTU6, glutathione S-transferase tau 6 0.591 -0.043
23 264400_at AT1G61800 ATGPT2, ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, GPT2, glucose-6-phosphate/phosphate translocator 2 0.580 -0.078
24 249732_at AT5G24420 PGL5, 6-phosphogluconolactonase 5 0.569 0.005
25 266456_at AT2G22770 NAI1 0.565 0.030
26 251770_at AT3G55970 ATJRG21, JRG21, jasmonate-regulated gene 21 0.555 -0.026
27 247175_at AT5G65280 GCL1, GCR2-like 1 0.547 0.043
28 257644_at AT3G25780 AOC3, allene oxide cyclase 3 0.545 -0.011
29 247723_at AT5G59220 HAI1, highly ABA-induced PP2C gene 1, SAG113, senescence associated gene 113 0.542 0.064
30 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.541 -0.009
31 247933_at AT5G56980 unknown 0.532 -0.001
32 265723_at AT2G32140 [transmembrane receptors] 0.531 0.032
33 265305_at AT2G20340 AAS, aromatic aldehyde synthase, AtAAS 0.527 -0.011
34 266977_at AT2G39420 [alpha/beta-Hydrolases superfamily protein] 0.524 0.024
35 261892_at AT1G80840 ATWRKY40, WRKY40, WRKY DNA-binding protein 40 0.518 -0.044
36 259878_at AT1G76790 IGMT5, indole glucosinolate O-methyltransferase 5 0.492 0.004
37 261431_at AT1G18710 AtMYB47, myb domain protein 47, MYB47, myb domain protein 47 0.489 -0.040
38 260237_at AT1G74430 ATMYB95, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 95, ATMYBCP66, ARABIDOPSIS THALIANA MYB DOMAIN CONTAINING PROTEIN 66, MYB95, myb domain protein 95 0.479 0.013
39 247030_at AT5G67210 IRX15-L, IRX15-LIKE 0.475 0.014
40 261826_at AT1G11580 ATPMEPCRA, PMEPCRA, methylesterase PCR A 0.463 0.017
41 257875_at AT3G17120 unknown 0.463 0.005
42 254387_at AT4G21850 ATMSRB9, methionine sulfoxide reductase B9, MSRB9, methionine sulfoxide reductase B9 0.462 -0.006
43 263182_at AT1G05575 unknown 0.457 -0.015
44 249910_at AT5G22630 ADT5, arogenate dehydratase 5 0.452 0.001
45 267425_at AT2G34810 [FAD-binding Berberine family protein] 0.443 0.002
46 246779_at AT5G27520 AtPNC2, PNC2, peroxisomal adenine nucleotide carrier 2 0.443 -0.020
47 246620_at AT5G36220 CYP81D1, cytochrome P450, family 81, subfamily D, polypeptide 1, CYP91A1, CYTOCHROME P450 91A1 0.441 0.022
48 259879_at AT1G76650 CML38, calmodulin-like 38 0.435 -0.040
49 254150_at AT4G24350 [Phosphorylase superfamily protein] 0.435 -0.011
50 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] 0.434 -0.094
51 252200_at AT3G50280 [HXXXD-type acyl-transferase family protein] 0.429 -0.039
52 251788_at AT3G55420 unknown -0.284 -0.002
53 263318_at AT2G24762 AtGDU4, glutamine dumper 4, GDU4, glutamine dumper 4 -0.249 -0.011
54 249008_at AT5G44680 [DNA glycosylase superfamily protein] -0.235 -0.007
55 260041_at AT1G68780 [RNI-like superfamily protein] -0.234 -0.032
56 260395_at AT1G69780 ATHB13 -0.214 -0.018
57 252612_at AT3G45160 [Putative membrane lipoprotein] -0.199 0.052
58 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.191 0.014
59 265250_at AT2G01950 BRL2, BRI1-like 2, VH1, VASCULAR HIGHWAY 1 -0.175 0.017
60 263384_at AT2G40130 SMXL8, SMAX1-like 8 -0.172 -0.023
61 262281_at AT1G68570 AtNPF3.1, NPF3.1, NRT1/ PTR family 3.1 -0.170 -0.026
62 250696_at AT5G06790 unknown -0.165 -0.048
63 248420_at AT5G51560 [Leucine-rich repeat protein kinase family protein] -0.162 0.001
64 254362_at AT4G22160 unknown -0.162 0.039
65 258332_at AT3G16180 NRT1.12, nitrate transporter 1.12 -0.158 0.008
66 253285_at AT4G34250 KCS16, 3-ketoacyl-CoA synthase 16 -0.154 -0.014
67 261594_at AT1G33240 AT-GTL1, GT2-LIKE 1, ATGTL1, GTL1, GT-2-like 1 -0.152 0.005
68 265175_at AT1G23480 ATCSLA03, cellulose synthase-like A3, ATCSLA3, CSLA03, CSLA03, cellulose synthase-like A3, CSLA3, CELLULOSE SYNTHASE-LIKE A3 -0.150 -0.016
69 264605_at AT1G04550 BDL, BODENLOS, IAA12, indole-3-acetic acid inducible 12 -0.150 -0.026
70 265918_at AT2G15090 KCS8, 3-ketoacyl-CoA synthase 8 -0.147 -0.011
71 248921_at AT5G45950 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.144 0.012
72 264501_at AT1G09390 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.144 0.017
73 248028_at AT5G55620 unknown -0.141 -0.057
74 254272_at AT4G22850 [SNARE associated Golgi protein family] -0.141 -0.014
75 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 -0.141 -0.037
76 254609_at AT4G18970 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.139 -0.001
77 248646_at AT5G49100 unknown -0.137 0.004
78 249750_at AT5G24570 unknown -0.137 0.001
79 257860_at AT3G13062 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] -0.132 0.029
80 252272_at AT3G49670 BAM2, BARELY ANY MERISTEM 2 -0.131 -0.012
81 247331_at AT5G63530 ATFP3, ARABIDOPSIS THALIANA FARNESYLATED PROTEIN 3, FP3, farnesylated protein 3 -0.130 0.050
82 253835_at AT4G27820 BGLU9, beta glucosidase 9 -0.129 0.012
83 253617_at AT4G30410 [sequence-specific DNA binding transcription factors] -0.129 0.005
84 249288_at AT5G41050 [Pollen Ole e 1 allergen and extensin family protein] -0.128 -0.010
85 253050_at AT4G37450 AGP18, arabinogalactan protein 18, ATAGP18 -0.127 0.001
86 253723_at AT4G29240 [Leucine-rich repeat (LRR) family protein] -0.123 -0.063
87 245326_at AT4G14100 [transferases, transferring glycosyl groups] -0.122 0.008
88 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.117 0.046
89 246917_at AT5G25280 [serine-rich protein-related] -0.117 0.008
90 254092_at AT4G25090 [Riboflavin synthase-like superfamily protein] -0.117 -0.042
91 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.114 0.042
92 265990_at AT2G24280 [alpha/beta-Hydrolases superfamily protein] -0.113 -0.026
93 252901_at AT4G39550 [Galactose oxidase/kelch repeat superfamily protein] -0.113 -0.001
94 250160_at AT5G15210 ATHB30, homeobox protein 30, HB30, homeobox protein 30, ZFHD3, ZINC FINGER HOMEODOMAIN 3, ZHD8, ZINC FINGER HOMEODOMAIN 8 -0.112 -0.029
95 256154_at AT3G08490 unknown -0.111 -0.041
96 249693_at AT5G35750 AHK2, histidine kinase 2, HK2, histidine kinase 2 -0.111 -0.009
97 250728_at AT5G06440 unknown -0.109 0.024
98 257297_at AT3G28040 [Leucine-rich receptor-like protein kinase family protein] -0.109 -0.007
99 262753_at AT1G16340 ATKDSA2, ATKSDA -0.107 -0.013
100 245607_at AT4G14330 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.106 0.011
101 248507_at AT5G50420 [O-fucosyltransferase family protein] -0.105 0.022
102 266921_at AT2G45970 CYP86A8, cytochrome P450, family 86, subfamily A, polypeptide 8, LCR, LACERATA -0.105 0.016