4.0:Information of module
CCA14 dark early
In comparison with 3d old, both 10mM sucrose and 0.2µM SMX help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0050826 response to freezing BP 1.990e-03
GO:0015802 basic amino acid transport BP 1.344e-02
GO:0048831 regulation of shoot system development BP 1.453e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043161 proteasome-mediated ubiquitin-dependent ... BP 1.001e-04
GO:0043248 proteasome assembly BP 1.193e-03
GO:0051788 response to misfolded protein BP 1.193e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
CCA14 dark early		 Log2 signal ratio
3d old, both 10mM sucrose and 0.2µM SMX
1 246267_at AT1G31812 ACBP, ACYL-COA-BINDING PROTEIN, ACBP6, acyl-CoA-binding protein 6 1.103 -0.106
2 255048_at AT4G09600 GASA3, GAST1 protein homolog 3 0.500 -0.171
3 246299_at AT3G51810 AT3, ATEM1, ARABIDOPSIS THALIANA LATE EMBRYOGENESIS ABUNDANT 1, EM1, LATE EMBRYOGENESIS ABUNDANT 1, GEA1, GUANINE NUCLEOTIDE EXCHANGE FACTOR FOR ADP RIBOSYLATION FACTORS 1 0.339 -0.288
4 246242_at AT4G36600 [Late embryogenesis abundant (LEA) protein] 0.294 -0.093
5 266274_at AT2G29380 HAI3, highly ABA-induced PP2C gene 3 0.283 -0.128
6 245976_at AT5G13080 ATWRKY75, ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY75, WRKY DNA-binding protein 75 0.237 -0.178
7 250158_at AT5G15190 unknown 0.226 -0.349
8 261936_at AT1G22600 [Late embryogenesis abundant protein (LEA) family protein] 0.206 -0.123
9 260090_at AT1G73310 scpl4, serine carboxypeptidase-like 4 0.185 -0.091
10 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] 0.185 -0.105
11 252314_at AT3G49400 [Transducin/WD40 repeat-like superfamily protein] 0.164 -0.071
12 262147_at AT1G52570 PLDALPHA2, phospholipase D alpha 2 0.155 -0.096
13 250493_at AT5G09800 [ARM repeat superfamily protein] 0.154 0.289
14 264734_at AT1G62280 SLAH1, SLAC1 homologue 1 0.152 0.017
15 257817_at AT3G25150 [Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain] -0.418 0.061
16 264565_at AT1G05280 unknown -0.324 0.107
17 266358_at AT2G32280 VCC, VASCULATURE COMPLEXITY AND CONNECTIVITY -0.253 -0.034
18 249255_at AT5G41610 ATCHX18, ARABIDOPSIS THALIANA CATION/H+ EXCHANGER 18, CHX18, cation/H+ exchanger 18 -0.218 0.236
19 249186_at AT5G43040 [Cysteine/Histidine-rich C1 domain family protein] -0.206 0.047
20 260012_at AT1G67865 unknown -0.184 -0.090
21 261504_at AT1G71692 AGL12, AGAMOUS-like 12, XAL1, XAANTAL1 -0.182 0.002
22 247581_at AT5G61350 [Protein kinase superfamily protein] -0.162 0.502
23 246189_at AT5G20910 AIP2, ABI3-interacting protein 2 -0.160 -0.040
24 256644_at AT3G32300 [pseudogene] -0.156 -0.065
25 261991_at AT1G33700 [Beta-glucosidase, GBA2 type family protein] -0.152 0.223
26 253084_at AT4G36260 SRS2, SHI RELATED SEQUENCE 2, STY2, STYLISH 2 -0.148 -0.084
27 259004_at AT3G01840 LYK2, LysM-containing receptor-like kinase 2 -0.146 -0.024