4.0:Information of module
roots ethylene
In comparison with columella auxin help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0000160 phosphorelay signal transduction system BP 4.122e-11
GO:0009719 response to endogenous stimulus BP 2.675e-10
GO:0009873 ethylene-activated signaling pathway BP 5.265e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010053 root epidermal cell differentiation BP 2.042e-07
GO:0090627 plant epidermal cell differentiation BP 3.170e-07
GO:0022622 root system development BP 4.405e-07
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roots ethylene		 Log2 signal ratio
columella auxin
1 251436_at AT3G59900 ARGOS, AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE 1.025 0.252
2 266364_at AT2G41230 ORS1, ORGAN SIZE RELATED 1 0.891 0.096
3 246149_at AT5G19890 [Peroxidase superfamily protein] 0.829 -0.025
4 265170_at AT1G23730 ATBCA3, BETA CARBONIC ANHYDRASE 3, BCA3, beta carbonic anhydrase 3 0.609 0.258
5 259975_at AT1G76470 [NAD(P)-binding Rossmann-fold superfamily protein] 0.572 0.076
6 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] 0.542 -0.042
7 257927_at AT3G23240 ATERF1, ETHYLENE RESPONSE FACTOR 1, ERF1, ethylene response factor 1 0.460 0.027
8 265948_at AT2G19590 ACO1, ACC oxidase 1, ATACO1 0.459 0.110
9 248208_at AT5G53980 ATHB52, homeobox protein 52, HB52, homeobox protein 52 0.457 0.275
10 263970_at AT2G42850 CYP718, cytochrome P450, family 718 0.449 0.155
11 247020_at AT5G67020 unknown 0.436 -0.040
12 256415_at AT3G11210 [SGNH hydrolase-type esterase superfamily protein] 0.426 0.187
13 260783_at AT1G06160 ORA59, octadecanoid-responsive Arabidopsis AP2/ERF 59 0.415 -0.086
14 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.405 -0.101
15 266270_at AT2G29470 ATGSTU3, glutathione S-transferase tau 3, GST21, GLUTATHIONE S-TRANSFERASE 21, GSTU3, glutathione S-transferase tau 3 0.379 0.106
16 261470_at AT1G28370 ATERF11, ERF DOMAIN PROTEIN 11, ERF11, ERF domain protein 11 0.358 0.435
17 265084_at AT1G03790 AtTZF4, SOM, SOMNUS, TZF4, Tandem CCCH Zinc Finger protein 4 0.346 0.259
18 266893_at AT2G26070 AtRTE1, RTE1, REVERSION-TO-ETHYLENE SENSITIVITY1 0.337 0.493
19 263436_at AT2G28690 unknown 0.326 0.011
20 252103_at AT3G51410 unknown 0.322 0.887
21 258182_at AT3G21500 DXL1, DXS-like 1, DXPS1, 1-deoxy-D-xylulose 5-phosphate synthase 1, DXS2, 1-deoxy-D-xylulose 5-phosphate (DXP) synthase 2 0.316 0.133
22 251144_at AT5G01210 [HXXXD-type acyl-transferase family protein] 0.306 0.063
23 251423_at AT3G60550 CYCP3;2, cyclin p3;2 0.301 0.366
24 251017_at AT5G02760 APD7, Arabidopsis Pp2c clade D 7 0.288 0.446
25 251810_at AT3G55250 PDE329, PIGMENT DEFECTIVE 329 0.287 0.235
26 249065_at AT5G44260 AtTZF5, TZF5, Tandem CCCH Zinc Finger protein 5 0.286 -0.136
27 255413_at AT4G03140 [NAD(P)-binding Rossmann-fold superfamily protein] 0.281 0.264
28 253182_at AT4G35190 LOG5, LONELY GUY 5 0.269 0.005
29 255814_at AT1G19900 [glyoxal oxidase-related protein] 0.266 -0.484
30 266849_at AT2G25940 ALPHA-VPE, alpha-vacuolar processing enzyme, ALPHAVPE 0.252 -0.014
31 250395_at AT5G10950 [Tudor/PWWP/MBT superfamily protein] 0.250 0.034
32 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase 0.248 0.083
33 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.246 0.522
34 261658_at AT1G50040 unknown 0.245 0.044
35 260220_at AT1G74650 ATMYB31, ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 31, ATY13, MYB31, myb domain protein 31 0.244 0.068
36 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 0.236 -0.085
37 258367_at AT3G14370 WAG2 0.228 0.135
38 246401_at AT1G57560 AtMYB50, myb domain protein 50, MYB50, myb domain protein 50 0.225 0.413
39 261700_at AT1G32690 unknown 0.225 0.084
40 262915_at AT1G59940 ARR3, response regulator 3 0.224 -0.065
41 246595_at AT5G14780 FDH, formate dehydrogenase 0.220 0.049
42 261917_at AT1G65920 [Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain] 0.217 0.233
43 261395_at AT1G79700 WRI4, WRINKLED 4 0.214 0.094
44 260451_at AT1G72360 AtERF73, ERF73, ethylene response factor 73, HRE1, HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 1 0.214 0.222
45 253985_at AT4G26220 CCoAOMT7, caffeoyl coenzyme A ester O-methyltransferase 7 0.210 -0.094
46 256360_at AT1G66440 [Cysteine/Histidine-rich C1 domain family protein] 0.207 -0.016
47 245644_at AT1G25320 [Leucine-rich repeat protein kinase family protein] 0.201 0.284
48 251246_at AT3G62100 IAA30, indole-3-acetic acid inducible 30 0.200 0.795
49 254155_at AT4G24480 [Protein kinase superfamily protein] 0.200 0.216
50 258145_at AT3G18200 UMAMIT4, Usually multiple acids move in and out Transporters 4 0.198 0.083
51 254949_at AT4G11020 unknown -0.681 -0.322
52 255822_at AT2G40610 ATEXP8, ATEXPA8, expansin A8, ATHEXP ALPHA 1.11, EXP8, EXPA8, expansin A8 -0.591 -0.386
53 251517_at AT3G59370 [Vacuolar calcium-binding protein-related] -0.557 -0.391
54 255591_at AT4G01630 ATEXP17, EXPANSIN 17, ATEXPA17, expansin A17, ATHEXP ALPHA 1.13, EXPA17, expansin A17 -0.498 -1.027
55 245689_at AT5G04120 [Phosphoglycerate mutase family protein] -0.497 -0.919
56 247483_at AT5G62420 [NAD(P)-linked oxidoreductase superfamily protein] -0.488 -0.109
57 258178_at AT3G21680 unknown -0.465 -0.031
58 258013_at AT3G19320 [Leucine-rich repeat (LRR) family protein] -0.420 0.000
59 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.399 -0.381
60 247880_at AT5G57780 P1R1, P1R1 -0.359 -0.181
61 249202_at AT5G42580 CYP705A12, cytochrome P450, family 705, subfamily A, polypeptide 12 -0.342 -0.234
62 250149_at AT5G14700 [NAD(P)-binding Rossmann-fold superfamily protein] -0.342 -0.074
63 254313_at AT4G22460 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.331 -0.254
64 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] -0.323 -0.169
65 247070_at AT5G66815 unknown -0.319 -0.013
66 266596_at AT2G46150 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] -0.302 -0.153
67 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.296 -0.230
68 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] -0.294 0.020
69 267216_at AT2G02620 [Cysteine/Histidine-rich C1 domain family protein] -0.290 -0.138
70 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 -0.290 -0.255
71 255608_at AT4G01140 unknown -0.289 -0.253
72 259793_at AT1G64380 [Integrase-type DNA-binding superfamily protein] -0.273 -0.057
73 259753_at AT1G71050 HIPP20, heavy metal associated isoprenylated plant protein 20 -0.273 -0.197
74 254571_at AT4G19370 unknown -0.273 0.026
75 256584_at AT3G28750 unknown -0.263 0.156
76 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] -0.263 -0.104
77 261261_at AT1G26730 [EXS (ERD1/XPR1/SYG1) family protein] -0.260 -0.106
78 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 -0.252 -0.074
79 248729_at AT5G48010 AtTHAS1, Arabidopsis thaliana thalianol synthase 1, THAS, THALIANOL SYNTHASE, THAS1, thalianol synthase 1 -0.251 -0.060
80 264529_at AT1G30820 [CTP synthase family protein] -0.247 0.014
81 254907_at AT4G11190 [Disease resistance-responsive (dirigent-like protein) family protein] -0.244 -0.055
82 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 -0.235 -0.139
83 261275_at AT1G26700 ATMLO14, MILDEW RESISTANCE LOCUS O 14, MLO14, MILDEW RESISTANCE LOCUS O 14 -0.231 -0.505
84 251746_at AT3G56060 [Glucose-methanol-choline (GMC) oxidoreductase family protein] -0.222 -0.130
85 260475_at AT1G11080 scpl31, serine carboxypeptidase-like 31 -0.216 -0.071
86 249406_at AT5G40210 UMAMIT42, Usually multiple acids move in and out Transporters 42 -0.215 -0.158
87 262533_at AT1G17090 unknown -0.214 -0.059
88 247991_at AT5G56320 ATEXP14, ATEXPA14, expansin A14, ATHEXP ALPHA 1.5, EXP14, EXPANSIN 14, EXPA14, expansin A14 -0.212 -0.327
89 266447_at AT2G43290 MSS3, multicopy suppressors of snf4 deficiency in yeast 3 -0.210 -0.009
90 247533_at AT5G61570 [Protein kinase superfamily protein] -0.206 -0.128
91 257272_at AT3G28130 UMAMIT44, Usually multiple acids move in and out Transporters 44 -0.197 -0.074
92 263238_at AT2G16580 SAUR8, SMALL AUXIN UPREGULATED RNA 8 -0.197 0.016
93 264379_at AT2G25200 unknown -0.194 -0.293
94 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 -0.191 -0.580
95 255674_at AT4G00430 PIP1;4, plasma membrane intrinsic protein 1;4, PIP1E, PLASMA MEMBRANE INTRINSIC PROTEIN 1E, TMP-C, TRANSMEMBRANE PROTEIN C -0.191 -0.326
96 262830_at AT1G14700 ATPAP3, PAP3, purple acid phosphatase 3 -0.187 -0.124
97 255450_at AT4G02850 [phenazine biosynthesis PhzC/PhzF family protein] -0.183 0.065
98 259161_at AT3G01500 ATBCA1, BETA CARBONIC ANHYDRASE 1, ATSABP3, ARABIDOPSIS THALIANA SALICYLIC ACID-BINDING PROTEIN 3, CA1, carbonic anhydrase 1, SABP3, SALICYLIC ACID-BINDING PROTEIN 3 -0.180 0.003
99 254020_at AT4G25700 B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, BETA-OHASE 1, beta-hydroxylase 1, chy1 -0.179 -0.102