4.0:Information of module
roots IAA
In comparison with root epidermis and lateral root cap pH4.6 help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006220 pyrimidine nucleotide metabolic process BP 5.736e-13
GO:0006221 pyrimidine nucleotide biosynthetic proce... BP 5.736e-13
GO:0072594 establishment of protein localization to... BP 8.364e-13
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010817 regulation of hormone levels BP 1.249e-07
GO:0010167 response to nitrate BP 1.397e-07
GO:0015706 nitrate transport BP 1.426e-07
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
roots IAA		 Log2 signal ratio
root epidermis and lateral root cap pH4.6
1 259735_at AT1G64405 unknown 0.970 -0.075
2 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 0.889 -0.033
3 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 0.852 0.011
4 266611_at AT2G14960 GH3.1 0.835 -0.138
5 245076_at AT2G23170 GH3.3 0.792 0.042
6 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 0.744 0.030
7 245140_at AT2G45420 LBD18, LOB domain-containing protein 18 0.718 -0.004
8 253047_at AT4G37295 unknown 0.619 -0.030
9 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.595 -0.053
10 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 0.552 -0.002
11 264773_at AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] 0.538 -0.050
12 245397_at AT4G14560 AXR5, AUXIN RESISTANT 5, IAA1, indole-3-acetic acid inducible 1 0.535 -0.101
13 248164_at AT5G54490 PBP1, pinoid-binding protein 1 0.518 -0.004
14 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.489 0.018
15 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.466 -0.237
16 259027_at AT3G09280 unknown 0.445 0.137
17 251612_at AT3G57950 unknown 0.440 -0.045
18 252417_at AT3G47480 [Calcium-binding EF-hand family protein] 0.436 0.052
19 253908_at AT4G27260 GH3.5, WES1 0.435 -0.141
20 251751_at AT3G55720 unknown 0.428 0.064
21 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 0.425 0.026
22 253070_at AT4G37850 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] 0.391 -0.226
23 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 0.387 0.077
24 263576_at AT2G17080 unknown 0.387 -0.170
25 263436_at AT2G28690 unknown 0.385 0.149
26 248763_at AT5G47550 [Cystatin/monellin superfamily protein] 0.379 0.105
27 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 0.372 0.005
28 267250_at AT2G23060 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.365 -0.006
29 246798_at AT5G26930 GATA23, GATA transcription factor 23 0.350 -0.076
30 253791_at AT4G28640 IAA11, indole-3-acetic acid inducible 11 0.349 -0.234
31 246992_at AT5G67430 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.345 -0.210
32 258399_at AT3G15540 IAA19, indole-3-acetic acid inducible 19, MSG2, MASSUGU 2 0.326 -0.065
33 266908_at AT2G34650 ABR, ABRUPTUS, PID, PINOID 0.309 0.039
34 265955_at AT2G37280 ABCG33, ATP-binding cassette G33, ATPDR5, PLEIOTROPIC DRUG RESISTANCE 5, PDR5, pleiotropic drug resistance 5 0.298 0.057
35 263363_at AT2G03850 [Late embryogenesis abundant protein (LEA) family protein] 0.294 -0.003
36 263360_at AT2G03830 GLV6, GOLVEN 6, RGF8, root meristem growth factor 8 0.293 -0.025
37 246576_at AT1G31650 ATROPGEF14, ROPGEF14, ROP (rho of plants) guanine nucleotide exchange factor 14 0.284 0.168
38 266507_at AT2G47860 SETH6 0.282 0.118
39 267075_at AT2G41070 ATBZIP12, DPBF4, EEL, ENHANCED EM LEVEL 0.282 -0.147
40 259729_at AT1G77640 [Integrase-type DNA-binding superfamily protein] 0.277 0.060
41 262912_at AT1G59740 AtNPF4.3, NPF4.3, NRT1/ PTR family 4.3 0.275 -0.023
42 245416_at AT4G17350 unknown 0.273 -0.041
43 258718_at AT3G09760 [RING/U-box superfamily protein] 0.272 -0.151
44 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.270 0.010
45 252638_at AT3G44540 FAR4, fatty acid reductase 4 0.269 0.015
46 258878_at AT3G03170 unknown 0.266 0.049
47 247151_at AT5G65640 bHLH093, beta HLH protein 93 0.266 0.088
48 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 0.263 -0.205
49 262971_at AT1G75640 [Leucine-rich receptor-like protein kinase family protein] 0.257 -0.053
50 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 0.256 -0.014
51 263931_at AT2G36220 unknown 0.244 0.039
52 265724_at AT2G32100 ATOFP16, RABIDOPSIS THALIANA OVATE FAMILY PROTEIN 16, OFP16, ovate family protein 16 0.229 -0.012
53 247953_at AT5G57260 CYP71B10, cytochrome P450, family 71, subfamily B, polypeptide 10 0.222 -0.059
54 256030_at AT1G34110 [Leucine-rich receptor-like protein kinase family protein] 0.221 -0.059
55 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.221 -0.024
56 250091_at AT5G17340 [Putative membrane lipoprotein] 0.221 -0.047
57 262303_at AT1G70920 ATHB18, homeobox-leucine zipper protein 18, HB18, homeobox-leucine zipper protein 18 0.220 -0.040
58 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 0.214 0.021
59 262263_at AT1G70940 ATPIN3, ARABIDOPSIS PIN-FORMED 3, PIN3, PIN-FORMED 3 0.206 -0.047
60 256018_at AT1G58300 HO4, heme oxygenase 4 0.205 -0.087
61 258253_at AT3G26760 [NAD(P)-binding Rossmann-fold superfamily protein] 0.202 -0.023
62 249983_at AT5G18470 [Curculin-like (mannose-binding) lectin family protein] 0.201 0.078
63 251925_at AT3G54000 unknown 0.199 -0.043
64 254983_at AT4G10560 MEE53, maternal effect embryo arrest 53 0.196 -0.087
65 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 0.195 -0.047
66 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 0.192 -0.003
67 256368_at AT1G66800 [NAD(P)-binding Rossmann-fold superfamily protein] 0.191 -0.290
68 262108_at AT1G02740 [MRG family protein] 0.191 -0.008
69 264479_at AT1G77280 [Protein kinase protein with adenine nucleotide alpha hydrolases-like domain] 0.190 -0.091
70 250728_at AT5G06440 unknown 0.190 0.051
71 261491_at AT1G14350 AtMYB124, myb domain protein 124, FLP, FOUR LIPS, MYB124 0.180 -0.048
72 250762_at AT5G05990 [Mitochondrial glycoprotein family protein] 0.180 0.166
73 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] 0.179 0.200
74 259268_at AT3G01070 AtENODL16, ENODL16, early nodulin-like protein 16 0.178 -0.141
75 249109_at AT5G43700 ATAUX2-11, AUXIN INDUCIBLE 2-11, IAA4, indole-3-acetic acid inducible 4 0.177 -0.092
76 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT 0.177 -0.014
77 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 0.176 0.031
78 252786_at AT3G42670 CHR38, chromatin remodeling 38, CLSY, CLASSY1, CLSY1, CLASSY 1 0.170 -0.040
79 264775_at AT1G22880 ATCEL5, ARABIDOPSIS THALIANA CELLULASE 5, ATGH9B4, ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9B4, CEL5, cellulase 5 0.168 -0.278
80 259091_at AT3G04890 [Uncharacterized conserved protein (DUF2358)] 0.165 -0.038
81 262056_at AT1G80245 [Spc97 / Spc98 family of spindle pole body (SBP) component] 0.165 0.078
82 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 0.164 0.536
83 254949_at AT4G11020 unknown -0.410 -0.837
84 257720_at AT3G18450 [PLAC8 family protein] -0.361 -0.744
85 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 -0.326 -0.135
86 255608_at AT4G01140 unknown -0.303 -0.111
87 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 -0.259 0.028
88 249768_at AT5G24100 [Leucine-rich repeat protein kinase family protein] -0.248 -0.106
89 260752_at AT1G49030 [PLAC8 family protein] -0.244 -0.081
90 251771_at AT3G56000 ATCSLA14, ARABIDOPSIS THALIANA CELLULOSE SYNTHASE LIKE A14, CSLA14, cellulose synthase like A14 -0.240 -0.136
91 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 -0.236 -0.017
92 254606_at AT4G19030 AT-NLM1, ATNLM1, NOD26-LIKE MAJOR INTRINSIC PROTEIN 1, NIP1;1, NOD26-LIKE INTRINSIC PROTEIN 1;1, NLM1, NOD26-like major intrinsic protein 1 -0.233 -0.002
93 265134_at AT1G51260 LPAT3, lysophosphatidyl acyltransferase 3 -0.231 -0.373
94 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 -0.225 -0.089
95 254294_at AT4G23070 ATRBL7, RHOMBOID-like protein 7, RBL7, RHOMBOID-like protein 7 -0.215 -0.064
96 252217_at AT3G50140 unknown -0.210 -0.254
97 263470_at AT2G31900 ATMYO5, MYOSIN 5, ATXIF, MYOSIN XI F, XIF, myosin-like protein XIF -0.210 -0.036
98 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 -0.205 -0.109
99 256275_at AT3G12110 ACT11, actin-11 -0.203 -0.145
100 258912_at AT3G06460 [GNS1/SUR4 membrane protein family] -0.199 -0.141
101 251116_at AT3G63470 scpl40, serine carboxypeptidase-like 40 -0.196 -0.020
102 258013_at AT3G19320 [Leucine-rich repeat (LRR) family protein] -0.195 -0.235
103 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A -0.191 -0.112
104 261480_at AT1G14280 PKS2, phytochrome kinase substrate 2 -0.188 -0.117
105 262134_at AT1G77990 AST56, SULTR2;2, SULPHATE TRANSPORTER 2;2 -0.187 -0.121
106 252302_at AT3G49190 [O-acyltransferase (WSD1-like) family protein] -0.185 -0.111
107 265246_at AT2G43050 ATPMEPCRD -0.185 -0.197
108 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] -0.184 -0.213
109 258901_at AT3G05640 [Protein phosphatase 2C family protein] -0.181 -0.102
110 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 -0.180 -0.197
111 264909_at AT2G17300 unknown -0.178 -0.133
112 266191_at AT2G39040 [Peroxidase superfamily protein] -0.175 -0.233
113 251060_at AT5G01820 ATCIPK14, ATSR1, serine/threonine protein kinase 1, CIPK14, CBL-INTERACTING PROTEIN KINASE 14, PKS24, SOS2-like protein kinase 24, SnRK3.15, SNF1-RELATED PROTEIN KINASE 3.15, SR1, serine/threonine protein kinase 1 -0.174 -0.036
114 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 -0.172 -0.018
115 263915_at AT2G36430 unknown -0.171 -0.254
116 253957_at AT4G26320 AGP13, arabinogalactan protein 13 -0.171 -0.212
117 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 -0.171 -0.008
118 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 -0.169 -0.080
119 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] -0.166 -0.007
120 261926_at AT1G22530 PATL2, PATELLIN 2 -0.165 -0.071
121 263765_at AT2G21540 ATSFH3, SEC14-LIKE 3, SFH3, SEC14-like 3 -0.163 -0.331
122 248343_at AT5G52260 AtMYB19, myb domain protein 19, MYB19, myb domain protein 19 -0.161 -0.043
123 255517_at AT4G02290 AtGH9B13, glycosyl hydrolase 9B13, GH9B13, glycosyl hydrolase 9B13 -0.158 -0.110
124 264598_at AT1G04610 YUC3, YUCCA 3 -0.158 -0.041
125 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.158 0.113
126 256968_at AT3G21070 ATNADK-1, NAD KINASE 1, NADK1, NAD kinase 1 -0.157 -0.029
127 252523_at AT3G46400 [Leucine-rich repeat protein kinase family protein] -0.156 -0.675
128 249718_at AT5G35740 [Carbohydrate-binding X8 domain superfamily protein] -0.155 0.019
129 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 -0.155 -0.083
130 251143_at AT5G01220 SQD2, sulfoquinovosyldiacylglycerol 2 -0.151 -0.143
131 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.149 -0.378
132 258528_at AT3G06770 [Pectin lyase-like superfamily protein] -0.148 -0.090
133 262385_at AT1G72960 [Root hair defective 3 GTP-binding protein (RHD3)] -0.146 -0.022
134 252536_at AT3G45700 [Major facilitator superfamily protein] -0.145 -0.212
135 254785_at AT4G12730 FLA2, FASCICLIN-like arabinogalactan 2 -0.143 -0.008
136 263226_at AT1G30690 [Sec14p-like phosphatidylinositol transfer family protein] -0.141 -0.024
137 252692_at AT3G43960 [Cysteine proteinases superfamily protein] -0.140 -0.192
138 248203_at AT5G54230 AtMYB49, myb domain protein 49, MYB49, myb domain protein 49 -0.139 0.078
139 255127_at AT4G08300 UMAMIT17, Usually multiple acids move in and out Transporters 17 -0.139 -0.079
140 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.138 0.006
141 265066_at AT1G03870 FLA9, FASCICLIN-like arabinoogalactan 9 -0.138 -0.027
142 248406_at AT5G51490 [Plant invertase/pectin methylesterase inhibitor superfamily] -0.137 -0.010
143 251723_at AT3G56230 [BTB/POZ domain-containing protein] -0.137 -0.231
144 254175_at AT4G24050 [NAD(P)-binding Rossmann-fold superfamily protein] -0.135 -0.017
145 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 -0.135 -0.176
146 247586_at AT5G60660 PIP2;4, plasma membrane intrinsic protein 2;4, PIP2F -0.134 -0.165
147 258158_at AT3G17790 ATACP5, ATPAP17, PAP17, purple acid phosphatase 17 -0.132 -0.083
148 264497_at AT1G30840 ATPUP4, purine permease 4, PUP4, purine permease 4 -0.129 -0.004
149 250892_at AT5G03760 ATCSLA09, ATCSLA9, CSLA09, CSLA9, CELLULOSE SYNTHASE LIKE A9, RAT4, RESISTANT TO AGROBACTERIUM TRANSFORMATION 4 -0.129 0.026
150 267209_at AT2G30930 unknown -0.127 -0.043
151 266444_at AT2G43150 [Proline-rich extensin-like family protein] -0.127 0.027
152 267318_at AT2G34770 ATFAH1, ARABIDOPSIS FATTY ACID HYDROXYLASE 1, FAH1, fatty acid hydroxylase 1 -0.126 -0.033
153 261745_at AT1G08500 AtENODL18, ENODL18, early nodulin-like protein 18 -0.125 -0.100
154 245776_at AT1G30260 unknown -0.124 0.004
155 251857_at AT3G54770 ARP1, ABA-regulated RNA-binding protein 1 -0.124 -0.041
156 265481_at AT2G15960 unknown -0.124 -0.105
157 250745_at AT5G05850 PIRL1, plant intracellular ras group-related LRR 1 -0.122 -0.149
158 246429_at AT5G17450 HIPP21, heavy metal associated isoprenylated plant protein 21 -0.122 -0.029
159 251722_at AT3G56200 [Transmembrane amino acid transporter family protein] -0.122 -0.096
160 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 -0.121 -0.029
161 255005_at AT4G09990 GXM2, glucuronoxylan methyltransferase 2 -0.120 -0.215
162 266703_at AT2G19880 [Nucleotide-diphospho-sugar transferases superfamily protein] -0.120 -0.090
163 267199_at AT2G30990 unknown -0.120 -0.020