4.0:Information of module
ein2 mutant roots mock
In comparison with root callus inducing medium 24h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009698 phenylpropanoid metabolic process BP 5.056e-06
GO:0000041 transition metal ion transport BP 9.096e-06
GO:0019748 secondary metabolic process BP 1.029e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0042221 response to chemical BP 1.575e-15
GO:0006970 response to osmotic stress BP 2.404e-14
GO:1901700 response to oxygen-containing compound BP 1.723e-13
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ein2 mutant roots mock		 Log2 signal ratio
root callus inducing medium 24h
1 260582_at AT2G47200 unknown 0.782 1.098
2 249686_at AT5G36140 CYP716A2, cytochrome P450, family 716, subfamily A, polypeptide 2 0.727 -0.035
3 249061_at AT5G44550 [Uncharacterised protein family (UPF0497)] 0.724 0.468
4 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.665 0.561
5 252639_at AT3G44550 FAR5, fatty acid reductase 5 0.638 0.450
6 260611_at AT2G43670 [Carbohydrate-binding X8 domain superfamily protein] 0.637 0.464
7 248621_at AT5G49350 [Glycine-rich protein family] 0.630 0.978
8 248333_at AT5G52390 [PAR1 protein] 0.601 0.983
9 260035_at AT1G68850 [Peroxidase superfamily protein] 0.599 0.689
10 252364_at AT3G48450 [RPM1-interacting protein 4 (RIN4) family protein] 0.598 -0.291
11 257428_at AT1G78990 [HXXXD-type acyl-transferase family protein] 0.597 -0.338
12 260438_at AT1G68290 ENDO2, endonuclease 2 0.594 0.392
13 253743_at AT4G28940 [Phosphorylase superfamily protein] 0.593 0.358
14 262414_at AT1G49430 LACS2, long-chain acyl-CoA synthetase 2, LRD2, LATERAL ROOT DEVELOPMENT 2 0.578 0.421
15 249687_at AT5G36150 ATPEN3, putative pentacyclic triterpene synthase 3, PEN3, putative pentacyclic triterpene synthase 3 0.573 -0.060
16 249881_at AT5G23190 CYP86B1, cytochrome P450, family 86, subfamily B, polypeptide 1 0.561 0.688
17 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.544 0.253
18 250576_at AT5G08250 [Cytochrome P450 superfamily protein] 0.537 0.206
19 252209_at AT3G50400 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.536 0.886
20 254474_at AT4G20390 [Uncharacterised protein family (UPF0497)] 0.527 0.377
21 260535_at AT2G43390 unknown 0.511 0.531
22 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] 0.508 0.362
23 259282_at AT3G11430 ATGPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5, GPAT5, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 5 0.504 0.515
24 265083_at AT1G03820 unknown 0.501 1.199
25 249894_at AT5G22580 [Stress responsive A/B Barrel Domain] 0.498 -0.357
26 250541_at AT5G09520 PELPK2, Pro-Glu-Leu|Ile|Val-Pro-Lys 2 0.487 0.525
27 250798_at AT5G05340 PRX52, peroxidase 52 0.469 0.874
28 257718_at AT3G18400 anac058, NAC domain containing protein 58, NAC058, NAC domain containing protein 58 0.467 0.364
29 246067_at AT5G19410 ABCG23, ATP-binding cassette G23 0.466 0.683
30 247492_at AT5G61890 [Integrase-type DNA-binding superfamily protein] 0.451 0.373
31 266006_at AT2G37360 ABCG2, ATP-binding cassette G2 0.449 0.609
32 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.435 0.036
33 262406_at AT1G34670 AtMYB93, myb domain protein 93, MYB93, myb domain protein 93 0.431 0.602
34 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 0.431 0.479
35 258625_at AT3G04370 PDLP4, plasmodesmata-located protein 4 0.431 0.662
36 250239_at AT5G13580 ABCG6, ATP-binding cassette G6 0.424 0.469
37 252638_at AT3G44540 FAR4, fatty acid reductase 4 0.423 0.747
38 250500_at AT5G09530 PELPK1, Pro-Glu-Leu|Ile|Val-Pro-Lys 1, PRP10, proline-rich protein 10 0.414 0.280
39 256217_at AT1G56320 unknown 0.412 0.537
40 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] 0.403 0.418
41 264635_at AT1G65500 unknown 0.394 -0.462
42 252395_at AT3G47950 AHA4, H(+)-ATPase 4, HA4, H(+)-ATPase 4 0.390 0.149
43 264842_at AT1G03700 [Uncharacterised protein family (UPF0497)] 0.388 0.454
44 247718_at AT5G59310 LTP4, lipid transfer protein 4 0.387 0.073
45 258905_at AT3G06390 [Uncharacterised protein family (UPF0497)] 0.387 0.180
46 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 0.384 0.346
47 263650_at AT1G04360 [RING/U-box superfamily protein] 0.376 0.638
48 254652_at AT4G18170 ATWRKY28, WRKY28, WRKY DNA-binding protein 28 0.376 -0.003
49 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 0.375 -0.015
50 255690_at AT4G00360 ATT1, ABERRANT INDUCTION OF TYPE THREE 1, CYP86A2, cytochrome P450, family 86, subfamily A, polypeptide 2 0.374 0.440
51 267344_at AT2G44230 unknown 0.369 0.259
52 248761_at AT5G47635 [Pollen Ole e 1 allergen and extensin family protein] 0.367 0.562
53 261545_at AT1G63530 unknown 0.367 -0.543
54 257021_at AT3G19710 BCAT4, branched-chain aminotransferase4 0.365 -1.156
55 245612_at AT4G14440 ATECI3, ARABIDOPSIS THALIANA DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, ECI3, DELTA(3), DELTA(2)-ENOYL COA ISOMERASE 3, HCD1, 3-hydroxyacyl-CoA dehydratase 1 0.341 0.537
56 267472_at AT2G02850 ARPN, plantacyanin 0.340 0.525
57 247467_at AT5G62130 [Per1-like family protein] 0.339 0.114
58 266708_at AT2G03200 [Eukaryotic aspartyl protease family protein] 0.334 0.517
59 262312_at AT1G70830 MLP28, MLP-like protein 28 0.328 -0.332
60 253195_at AT4G35420 DRL1, dihydroflavonol 4-reductase-like1, TKPR1, tetraketide alpha-pyrone reductase 1 0.326 0.355
61 248732_at AT5G48070 ATXTH20, XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 20, XTH20, xyloglucan endotransglucosylase/hydrolase 20 0.322 -0.051
62 266597_at AT2G46130 ATWRKY43, WRKY DNA-BINDING PROTEIN 43, WRKY43, WRKY DNA-binding protein 43 0.315 0.592
63 259735_at AT1G64405 unknown 0.296 1.199
64 261899_at AT1G80820 ATCCR2, CCR2, cinnamoyl coa reductase 0.287 -0.327
65 265685_at AT2G24430 ANAC038, NAC domain containing protein 38, ANAC039, Arabidopsis NAC domain containing protein 39, NAC038, NAC domain containing protein 38 0.286 0.307
66 252533_at AT3G46110 [LOCATED IN: plasma membrane] 0.282 0.166
67 251481_at AT3G59730 LecRK-V.6, L-type lectin receptor kinase V.6 0.280 -0.183
68 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 0.277 -0.530
69 253999_at AT4G26200 ACCS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ACS7, 1-amino-cyclopropane-1-carboxylate synthase 7, ATACS7 0.274 -0.067
70 259429_at AT1G01600 CYP86A4, cytochrome P450, family 86, subfamily A, polypeptide 4 0.268 0.450
71 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 0.253 -0.620
72 256128_at AT1G18140 ATLAC1, LAC1, laccase 1 0.246 0.053
73 252905_at AT4G39720 [VQ motif-containing protein] 0.245 0.259
74 258620_at AT3G02940 AtMYB107, myb domain protein 107, MYB107, myb domain protein 107 0.245 0.122
75 247769_at AT5G58910 LAC16, laccase 16 0.244 0.171
76 260541_at AT2G43530 [Scorpion toxin-like knottin superfamily protein] 0.240 -0.462
77 247925_at AT5G57560 TCH4, Touch 4, XTH22, xyloglucan endotransglucosylase/hydrolase 22 0.239 -0.823
78 257512_at AT1G35250 ALT2, acyl-lipid thioesterase 2 0.237 0.139
79 254512_at AT4G20230 [Terpenoid cyclases/Protein prenyltransferases superfamily protein] 0.237 -0.295
80 262317_at AT2G48140 EDA4, embryo sac development arrest 4 0.237 0.345
81 250200_at AT5G14130 [Peroxidase superfamily protein] 0.233 0.370
82 248100_at AT5G55180 [O-Glycosyl hydrolases family 17 protein] 0.231 0.134
83 263010_at AT1G23330 [alpha/beta-Hydrolases superfamily protein] 0.228 0.367
84 254805_at AT4G12480 EARLI1, EARLY ARABIDOPSIS ALUMINUM INDUCED 1, pEARLI 1 -1.368 0.317
85 254818_at AT4G12470 AZI1, azelaic acid induced 1 -1.023 0.244
86 264415_at AT1G43160 RAP2.6, related to AP2 6 -0.994 -0.406
87 246000_at AT5G20820 SAUR76, SMALL AUXIN UPREGULATED RNA 76 -0.949 0.409
88 251974_at AT3G53200 AtMYB27, myb domain protein 27, MYB27, myb domain protein 27 -0.800 0.020
89 255807_at AT4G10270 [Wound-responsive family protein] -0.779 -0.288
90 261606_at AT1G49570 [Peroxidase superfamily protein] -0.747 -0.391
91 258184_at AT3G21510 AHP1, histidine-containing phosphotransmitter 1 -0.634 -0.042
92 258930_at AT3G10040 [sequence-specific DNA binding transcription factors] -0.626 -0.584
93 258923_at AT3G10450 SCPL7, serine carboxypeptidase-like 7 -0.555 0.138
94 247679_at AT5G59540 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.525 0.093
95 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 -0.516 -0.170
96 260668_at AT1G19530 unknown -0.515 -0.288
97 250152_at AT5G15120 unknown -0.489 -0.100
98 267230_at AT2G44080 ARL, ARGOS-like -0.472 -0.218
99 249384_at AT5G39890 unknown -0.461 -0.213
100 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI -0.458 -0.006
101 257163_at AT3G24310 ATMYB71, MYB DOMAIN PROTEIN 71, MYB305, myb domain protein 305 -0.450 -0.749
102 252502_at AT3G46900 COPT2, copper transporter 2 -0.449 -0.560
103 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.439 -0.151
104 266526_at AT2G16980 [Major facilitator superfamily protein] -0.422 -0.517
105 266900_at AT2G34610 unknown -0.396 0.334
106 261567_at AT1G33055 unknown -0.394 -0.323
107 258570_at AT3G04530 ATPPCK2, PEPCK2, PHOSPHOENOLPYRUVATE CARBOXYLASE KINASE 2, PPCK2, phosphoenolpyruvate carboxylase kinase 2 -0.392 -0.709
108 267337_at AT2G39980 [HXXXD-type acyl-transferase family protein] -0.391 0.214
109 263436_at AT2G28690 unknown -0.387 0.757
110 265481_at AT2G15960 unknown -0.377 -0.766
111 263350_at AT2G13360 AGT, alanine:glyoxylate aminotransferase, AGT1, ALANINE:GLYOXYLATE AMINOTRANSFERASE 1, SGAT, L-serine:glyoxylate aminotransferase -0.367 -0.209
112 262638_at AT1G06650 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.366 -0.117
113 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.351 -0.307
114 250680_at AT5G06570 [alpha/beta-Hydrolases superfamily protein] -0.347 -0.349
115 250928_at AT5G03280 ATEIN2, CKR1, CYTOKININ RESISTANT 1, EIN2, ETHYLENE INSENSITIVE 2, ERA3, ENHANCED RESPONSE TO ABA3, ORE2, ORESARA 2, ORE3, ORESARA 3, PIR2 -0.344 0.045
116 248050_at AT5G56100 [glycine-rich protein / oleosin] -0.340 -0.230
117 253874_at AT4G27450 [Aluminium induced protein with YGL and LRDR motifs] -0.329 -0.125
118 246935_at AT5G25350 EBF2, EIN3-binding F box protein 2 -0.327 0.193
119 249467_at AT5G39610 ANAC092, Arabidopsis NAC domain containing protein 92, ATNAC2, NAC domain containing protein 2, ATNAC6, NAC domain containing protein 6, NAC2, NAC domain containing protein 2, NAC6, NAC domain containing protein 6, ORE1, ORESARA 1 -0.323 0.227
120 246595_at AT5G14780 FDH, formate dehydrogenase -0.313 0.230
121 248770_at AT5G47740 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.308 -0.685
122 262373_at AT1G73120 unknown -0.301 -0.022
123 257280_at AT3G14440 ATNCED3, NCED3, nine-cis-epoxycarotenoid dioxygenase 3, SIS7, SUGAR INSENSITIVE 7, STO1, SALT TOLERANT 1 -0.298 -0.731
124 251971_at AT3G53160 UGT73C7, UDP-glucosyl transferase 73C7 -0.287 0.180
125 257026_at AT3G19200 unknown -0.285 0.283
126 264425_at AT1G61750 [Receptor-like protein kinase-related family protein] -0.282 -0.281
127 252282_at AT3G49360 PGL2, 6-phosphogluconolactonase 2 -0.254 -0.392
128 260662_at AT1G19540 [NmrA-like negative transcriptional regulator family protein] -0.247 -0.209
129 248432_at AT5G51390 unknown -0.244 -0.540
130 254550_at AT4G19690 ATIRT1, ARABIDOPSIS IRON-REGULATED TRANSPORTER 1, IRT1, iron-regulated transporter 1 -0.244 -0.424
131 251443_at AT3G59940 KFB50, Kelch repeat F-box 50, KMD4, KISS ME DEADLY 4 -0.243 -0.331
132 266757_at AT2G46940 unknown -0.242 -0.416
133 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.237 0.000
134 251066_at AT5G01880 DAFL2, DAF-Like gene 2 -0.234 0.358
135 256681_at AT3G52340 ATSPP2, SUCROSE-PHOSPHATASE 2, SPP2, sucrose-6F-phosphate phosphohydrolase 2 -0.232 0.491
136 250952_at AT5G03570 ATIREG2, ARABIDOPSIS THALIANA IRON-REGULATED PROTEIN 2, FPN2, FERROPORTIN 2, IREG2, iron regulated 2 -0.230 -0.370
137 266983_at AT2G39400 [alpha/beta-Hydrolases superfamily protein] -0.227 -0.108
138 259982_at AT1G76410 ATL8 -0.223 0.287
139 247793_at AT5G58650 PSY1, plant peptide containing sulfated tyrosine 1 -0.223 0.334
140 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 -0.220 -0.221
141 256923_at AT3G29635 [HXXXD-type acyl-transferase family protein] -0.217 0.167
142 259743_at AT1G71140 [MATE efflux family protein] -0.214 0.704
143 261211_at AT1G12780 ATUGE1, A. THALIANA UDP-GLC 4-EPIMERASE 1, UGE1, UDP-D-glucose/UDP-D-galactose 4-epimerase 1 -0.213 -0.107
144 253872_at AT4G27410 ANAC072, Arabidopsis NAC domain containing protein 72, RD26, RESPONSIVE TO DESICCATION 26 -0.209 -0.508
145 250158_at AT5G15190 unknown -0.206 -0.345
146 266444_at AT2G43150 [Proline-rich extensin-like family protein] -0.202 -0.074
147 262916_at AT1G59700 ATGSTU16, glutathione S-transferase TAU 16, GSTU16, glutathione S-transferase TAU 16 -0.200 0.195
148 250937_at AT5G03230 unknown -0.198 -0.044
149 263320_at AT2G47180 AtGolS1, galactinol synthase 1, GolS1, galactinol synthase 1 -0.197 -0.436
150 264682_at AT1G65570 [Pectin lyase-like superfamily protein] -0.197 -0.509
151 258064_at AT3G14680 CYP72A14, cytochrome P450, family 72, subfamily A, polypeptide 14 -0.192 0.043
152 259502_at AT1G15670 KFB01, Kelch repeat F-box 1, KMD2, KISS ME DEADLY 2 -0.191 -0.128
153 249800_at AT5G23660 AtSWEET12, MTN3, homolog of Medicago truncatula MTN3, SWEET12 -0.187 -0.398
154 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 -0.187 -0.150
155 259694_at AT1G63180 UGE3, UDP-D-glucose/UDP-D-galactose 4-epimerase 3 -0.187 0.012
156 247005_at AT5G67520 adenosine-5'-phosphosulfate (APS) kinase 4 -0.186 0.088
157 259244_at AT3G07650 BBX7, B-box domain protein 7, COL9, CONSTANS-like 9 -0.185 -0.175
158 254681_at AT4G18140 SSP4b, SCP1-like small phosphatase 4b -0.184 -0.264
159 247710_at AT5G59260 LecRK-II.1, L-type lectin receptor kinase II.1 -0.180 -0.115
160 265995_at AT2G24140 unknown -0.178 -0.001
161 253994_at AT4G26080 ABI1, ABA INSENSITIVE 1, AtABI1 -0.175 0.140
162 248207_at AT5G53970 TAT7, tyrosine aminotransferase 7 -0.175 0.025
163 250649_at AT5G06690 WCRKC1, WCRKC thioredoxin 1 -0.174 -0.042
164 253997_at AT4G26090 RPS2, RESISTANT TO P. SYRINGAE 2 -0.174 0.019
165 246195_at AT4G36410 UBC17, ubiquitin-conjugating enzyme 17 -0.172 0.028