4.0:Information of module
aux1 mutant roots air
In comparison with root callus inducing medium 12 h help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 5.449e-10
GO:0051234 establishment of localization BP 6.591e-10
GO:1901700 response to oxygen-containing compound BP 9.619e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 8.424e-11
GO:0009719 response to endogenous stimulus BP 5.876e-08
GO:0009725 response to hormone BP 6.020e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
aux1 mutant roots air		 Log2 signal ratio
root callus inducing medium 12 h
1 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 1.138 -0.186
2 254949_at AT4G11020 unknown 0.622 -0.038
3 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.558 -0.222
4 252502_at AT3G46900 COPT2, copper transporter 2 0.545 -0.507
5 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.522 -0.021
6 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.512 -0.056
7 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.503 0.055
8 248316_at AT5G52670 [Copper transport protein family] 0.435 -0.934
9 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.415 -0.354
10 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.412 0.221
11 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 0.399 -0.599
12 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.393 -0.456
13 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] 0.386 -0.109
14 259653_at AT1G55240 unknown 0.376 -0.187
15 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 0.376 -0.334
16 263915_at AT2G36430 unknown 0.371 -0.407
17 257720_at AT3G18450 [PLAC8 family protein] 0.367 -0.076
18 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.367 -0.538
19 265543_at AT2G28270 [Cysteine/Histidine-rich C1 domain family protein] 0.367 -0.202
20 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.360 -0.375
21 259251_at AT3G07600 [Heavy metal transport/detoxification superfamily protein ] 0.352 -0.688
22 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.349 -0.149
23 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] 0.337 0.038
24 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] 0.336 -0.081
25 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.330 -0.115
26 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.330 -0.449
27 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.316 -0.005
28 255608_at AT4G01140 unknown 0.316 -0.224
29 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.313 0.603
30 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 0.305 -0.023
31 262304_at AT1G70890 MLP43, MLP-like protein 43 0.304 -0.680
32 258905_at AT3G06390 [Uncharacterised protein family (UPF0497)] 0.299 -0.071
33 266396_at AT2G38790 unknown 0.297 -0.729
34 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 0.280 -0.128
35 265246_at AT2G43050 ATPMEPCRD 0.278 -0.167
36 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.277 -0.748
37 257348_at AT2G42140 [VQ motif-containing protein] 0.277 -0.439
38 251079_at AT5G02000 unknown 0.273 -0.150
39 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] 0.265 -0.213
40 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 0.265 -0.297
41 255407_at AT4G03480 [Ankyrin repeat family protein] 0.263 -0.157
42 254938_at AT4G10770 ATOPT7, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, OPT7, oligopeptide transporter 7 0.262 -0.192
43 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 0.257 -0.499
44 266344_at AT2G01580 unknown 0.251 0.059
45 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.251 -0.345
46 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.248 -0.429
47 265817_at AT2G18050 HIS1-3, histone H1-3 0.240 0.100
48 262580_at AT1G15330 [Cystathionine beta-synthase (CBS) protein] 0.239 -0.299
49 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A 0.237 -0.346
50 256275_at AT3G12110 ACT11, actin-11 0.237 -0.476
51 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.235 0.157
52 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 0.235 -0.408
53 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 0.232 -0.269
54 267042_at AT2G34320 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.230 0.036
55 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 0.224 -0.114
56 252236_at AT3G49930 [C2H2 and C2HC zinc fingers superfamily protein] 0.223 -0.120
57 247205_at AT5G64890 PROPEP2, elicitor peptide 2 precursor 0.222 -0.311
58 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 0.221 -0.197
59 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] 0.220 0.053
60 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase 0.215 0.870
61 263919_at AT2G36470 unknown 0.212 -0.133
62 262533_at AT1G17090 unknown 0.212 0.607
63 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 0.212 -0.500
64 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 0.211 -0.188
65 247586_at AT5G60660 PIP2;4, plasma membrane intrinsic protein 2;4, PIP2F 0.207 -0.446
66 264434_at AT1G10340 [Ankyrin repeat family protein] 0.207 -0.487
67 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.205 -0.416
68 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 0.204 0.027
69 252536_at AT3G45700 [Major facilitator superfamily protein] 0.203 -0.288
70 261308_at AT1G48480 RKL1, receptor-like kinase 1 0.201 0.082
71 251401_at AT3G60270 [Cupredoxin superfamily protein] 0.200 -0.075
72 252987_at AT4G38390 RHS17, root hair specific 17 0.199 -0.028
73 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] 0.199 -0.620
74 253957_at AT4G26320 AGP13, arabinogalactan protein 13 0.196 -0.656
75 254344_at AT4G22110 [GroES-like zinc-binding dehydrogenase family protein] 0.195 0.075
76 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] 0.195 -0.038
77 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.193 -0.451
78 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.192 -0.050
79 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.190 -0.016
80 245034_at AT2G26390 [Serine protease inhibitor (SERPIN) family protein] 0.188 -0.617
81 267209_at AT2G30930 unknown 0.188 0.084
82 252217_at AT3G50140 unknown 0.188 0.028
83 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 0.185 0.154
84 267367_at AT2G44210 unknown 0.184 0.107
85 256600_at AT3G14850 TBL41, TRICHOME BIREFRINGENCE-LIKE 41 0.184 -0.072
86 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.183 -0.781
87 259854_at AT1G72200 [RING/U-box superfamily protein] 0.182 -0.346
88 252594_at AT3G45680 [Major facilitator superfamily protein] 0.181 -0.175
89 251744_at AT3G56010 unknown 0.181 0.138
90 257670_at AT3G20340 unknown 0.181 -0.378
91 266611_at AT2G14960 GH3.1 -0.953 0.644
92 267411_at AT2G34930 [disease resistance family protein / LRR family protein] -0.843 -0.603
93 245140_at AT2G45420 LBD18, LOB domain-containing protein 18 -0.727 0.815
94 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 -0.718 -0.006
95 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 -0.715 0.962
96 245076_at AT2G23170 GH3.3 -0.653 0.583
97 259735_at AT1G64405 unknown -0.637 1.063
98 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.605 0.428
99 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.601 -0.058
100 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.569 0.641
101 253047_at AT4G37295 unknown -0.563 0.712
102 264773_at AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] -0.544 0.489
103 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.534 -0.133
104 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.473 -0.316
105 257026_at AT3G19200 unknown -0.466 0.200
106 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.466 0.193
107 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 -0.464 0.014
108 263575_at AT2G17070 unknown -0.444 -0.004
109 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] -0.443 0.212
110 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 -0.441 0.678
111 245567_at AT4G14630 GLP9, germin-like protein 9 -0.439 -0.366
112 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 -0.422 0.628
113 259027_at AT3G09280 unknown -0.407 0.255
114 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.383 -0.133
115 257386_at AT2G42440 ASL15, ASYMMETRIC LEAVES 2-like 15, LBD17, LOB domain-containing protein 17 -0.358 0.865
116 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.346 0.659
117 244936_at ATCG01100 NDHA -0.336 -0.055
118 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 -0.335 0.455
119 246798_at AT5G26930 GATA23, GATA transcription factor 23 -0.332 1.089
120 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 -0.325 1.119
121 256702_at AT3G30380 [alpha/beta-Hydrolases superfamily protein] -0.321 0.124
122 253908_at AT4G27260 GH3.5, WES1 -0.320 0.475
123 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 -0.309 0.029
124 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.304 0.471
125 255658_at AT4G00770 TRM9, TON1 Recruiting Motif 9 -0.302 -0.056
126 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 -0.291 0.108
127 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 -0.289 0.227
128 249992_at AT5G18560 PUCHI -0.287 0.385
129 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.284 -0.175
130 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.281 -0.143
131 247450_at AT5G62350 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.273 0.053
132 258718_at AT3G09760 [RING/U-box superfamily protein] -0.272 0.413
133 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.269 0.453
134 260528_at AT2G47260 ATWRKY23, WRKY DNA-BINDING PROTEIN 23, WRKY23, WRKY DNA-binding protein 23 -0.268 0.149
135 262001_at AT1G33790 [jacalin lectin family protein] -0.266 0.379
136 265828_at AT2G14520 unknown -0.255 0.137
137 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 -0.254 -0.362
138 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.253 -0.072
139 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.253 0.399
140 266507_at AT2G47860 SETH6 -0.251 0.683
141 266908_at AT2G34650 ABR, ABRUPTUS, PID, PINOID -0.250 0.243
142 254020_at AT4G25700 B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, BETA-OHASE 1, beta-hydroxylase 1, chy1 -0.249 0.196
143 253180_at AT4G35210 unknown -0.249 -0.142
144 252133_at AT3G50900 unknown -0.242 0.141
145 247953_at AT5G57260 CYP71B10, cytochrome P450, family 71, subfamily B, polypeptide 10 -0.233 0.128
146 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 -0.233 -0.104
147 254756_at AT4G13235 EDA21, embryo sac development arrest 21 -0.232 0.124
148 255911_at AT1G66930 [Protein kinase superfamily protein] -0.232 -0.037
149 246488_at AT5G16010 [3-oxo-5-alpha-steroid 4-dehydrogenase family protein] -0.227 0.056
150 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.226 -0.137
151 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.225 -0.061
152 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 -0.216 0.133
153 245416_at AT4G17350 unknown -0.214 0.247
154 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A -0.213 -0.273
155 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 -0.211 -0.104
156 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] -0.210 -0.229
157 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.208 0.267
158 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.206 0.315
159 247802_at AT5G58580 ATL63, TOXICOS EN LEVADURA 63, TL63, TOXICOS EN LEVADURA 63 -0.205 0.366
160 259426_at AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 -0.205 -0.057
161 248205_at AT5G54300 unknown -0.204 0.017
162 252305_at AT3G49240 emb1796, embryo defective 1796 -0.201 0.256
163 254667_at AT4G18280 [glycine-rich cell wall protein-related] -0.200 -0.217
164 247178_at AT5G65205 [NAD(P)-binding Rossmann-fold superfamily protein] -0.196 -0.088
165 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 -0.195 0.472
166 260841_at AT1G29195 unknown -0.194 0.274
167 256030_at AT1G34110 [Leucine-rich receptor-like protein kinase family protein] -0.194 0.424
168 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.194 0.436
169 263931_at AT2G36220 unknown -0.191 -0.210
170 255064_at AT4G08950 EXO, EXORDIUM -0.191 -0.304
171 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 -0.191 -0.198
172 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] -0.190 -0.401
173 250091_at AT5G17340 [Putative membrane lipoprotein] -0.188 -0.296
174 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.188 0.394
175 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 -0.188 0.401
176 261970_at AT1G65960 GAD2, glutamate decarboxylase 2 -0.186 0.025
177 247944_at AT5G57100 [Nucleotide/sugar transporter family protein] -0.186 0.053
178 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 -0.184 0.585
179 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B -0.180 -0.004