4.0:Information of module
aux1 mutant roots air
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006810 transport BP 5.449e-10
GO:0051234 establishment of localization BP 6.591e-10
GO:1901700 response to oxygen-containing compound BP 9.619e-10
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009733 response to auxin BP 8.424e-11
GO:0009719 response to endogenous stimulus BP 5.876e-08
GO:0009725 response to hormone BP 6.020e-08
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
aux1 mutant roots air		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 254098_at AT4G25100 ATFSD1, ARABIDOPSIS FE SUPEROXIDE DISMUTASE 1, FSD1, Fe superoxide dismutase 1 1.138 0.451
2 254949_at AT4G11020 unknown 0.622 -1.243
3 256940_at AT3G30720 QQS, QUA-QUINE STARCH 0.558 -0.328
4 252502_at AT3G46900 COPT2, copper transporter 2 0.545 -0.880
5 266996_at AT2G34490 CYP710A2, cytochrome P450, family 710, subfamily A, polypeptide 2 0.522 -0.286
6 256766_at AT3G22231 PCC1, PATHOGEN AND CIRCADIAN CONTROLLED 1 0.512 -0.616
7 259987_at AT1G75030 ATLP-3, thaumatin-like protein 3, TLP-3, thaumatin-like protein 3 0.503 -0.354
8 248316_at AT5G52670 [Copper transport protein family] 0.435 -1.345
9 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] 0.415 -0.498
10 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.412 0.835
11 256012_at AT1G19250 FMO1, flavin-dependent monooxygenase 1 0.399 -0.811
12 256306_at AT1G30370 DLAH, DAD1-like acylhydrolase 0.393 -0.624
13 265014_at AT1G24430 [HXXXD-type acyl-transferase family protein] 0.386 -0.699
14 259653_at AT1G55240 unknown 0.376 -1.144
15 248979_at AT5G45080 AtPP2-A6, phloem protein 2-A6, PP2-A6, phloem protein 2-A6 0.376 0.154
16 263915_at AT2G36430 unknown 0.371 -0.316
17 257720_at AT3G18450 [PLAC8 family protein] 0.367 -0.756
18 245689_at AT5G04120 [Phosphoglycerate mutase family protein] 0.367 -0.212
19 265543_at AT2G28270 [Cysteine/Histidine-rich C1 domain family protein] 0.367 -0.225
20 254324_at AT4G22640 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.360 -0.514
21 259251_at AT3G07600 [Heavy metal transport/detoxification superfamily protein ] 0.352 -0.922
22 265111_at AT1G62510 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.349 1.226
23 245889_at AT5G09480 [hydroxyproline-rich glycoprotein family protein] 0.337 -0.907
24 264403_at AT2G25150 [HXXXD-type acyl-transferase family protein] 0.336 -1.096
25 264375_at AT2G25090 AtCIPK16, CIPK16, CBL-interacting protein kinase 16, SnRK3.18, SNF1-RELATED PROTEIN KINASE 3.18 0.330 -1.072
26 260067_at AT1G73780 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.330 -0.975
27 257135_at AT3G12900 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.316 -0.288
28 255608_at AT4G01140 unknown 0.316 0.095
29 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.313 -0.705
30 262730_at AT1G16390 ATOCT3, organic cation/carnitine transporter 3, OCT3, organic cation/carnitine transporter 3 0.305 0.687
31 262304_at AT1G70890 MLP43, MLP-like protein 43 0.304 -1.014
32 258905_at AT3G06390 [Uncharacterised protein family (UPF0497)] 0.299 -0.591
33 266396_at AT2G38790 unknown 0.297 0.474
34 265418_at AT2G20880 AtERF53, ERF53, ERF domain 53 0.280 0.482
35 265246_at AT2G43050 ATPMEPCRD 0.278 -0.050
36 254056_at AT4G25250 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.277 0.496
37 257348_at AT2G42140 [VQ motif-containing protein] 0.277 0.007
38 251079_at AT5G02000 unknown 0.273 -0.478
39 246251_at AT4G37220 [Cold acclimation protein WCOR413 family] 0.265 -0.828
40 245736_at AT1G73330 ATDR4, drought-repressed 4, DR4, drought-repressed 4 0.265 -0.260
41 255407_at AT4G03480 [Ankyrin repeat family protein] 0.263 0.124
42 254938_at AT4G10770 ATOPT7, ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, OPT7, oligopeptide transporter 7 0.262 0.684
43 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 0.257 0.843
44 266344_at AT2G01580 unknown 0.251 -0.576
45 246011_at AT5G08330 AtTCP11, TCP11, TCP domain protein 11 0.251 1.288
46 253088_at AT4G36220 CYP84A1, CYTOCHROME P450 84A1, FAH1, ferulic acid 5-hydroxylase 1 0.248 0.502
47 265817_at AT2G18050 HIS1-3, histone H1-3 0.240 0.012
48 262580_at AT1G15330 [Cystathionine beta-synthase (CBS) protein] 0.239 -0.015
49 263876_at AT2G21880 ATRAB7A, RAB GTPase homolog 7A, ATRABG2, ARABIDOPSIS RAB GTPASE HOMOLOG G2, RAB7A, RAB GTPase homolog 7A 0.237 -0.868
50 256275_at AT3G12110 ACT11, actin-11 0.237 0.535
51 254215_at AT4G23700 ATCHX17, cation/H+ exchanger 17, CHX17, cation/H+ exchanger 17 0.235 -0.283
52 247678_at AT5G59520 AtZIP2, ZIP2, ZRT/IRT-like protein 2 0.235 0.270
53 265443_at AT2G20750 ATEXPB1, expansin B1, ATHEXP BETA 1.5, EXPB1, expansin B1 0.232 0.331
54 267042_at AT2G34320 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] 0.230 -0.076
55 248104_at AT5G55250 AtIAMT1, IAMT1, IAA carboxylmethyltransferase 1 0.224 0.134
56 252236_at AT3G49930 [C2H2 and C2HC zinc fingers superfamily protein] 0.223 -1.098
57 247205_at AT5G64890 PROPEP2, elicitor peptide 2 precursor 0.222 -0.741
58 258241_at AT3G27650 LBD25, LOB domain-containing protein 25 0.221 0.475
59 263616_at AT2G04680 [Cysteine/Histidine-rich C1 domain family protein] 0.220 -0.973
60 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase 0.215 1.310
61 263919_at AT2G36470 unknown 0.212 -0.914
62 262533_at AT1G17090 unknown 0.212 -0.244
63 250832_at AT5G04950 ATNAS1, ARABIDOPSIS THALIANA NICOTIANAMINE SYNTHASE 1, NAS1, nicotianamine synthase 1 0.212 -0.309
64 258299_at AT3G23410 ATFAO3, ARABIDOPSIS FATTY ALCOHOL OXIDASE 3, FAO3, fatty alcohol oxidase 3 0.211 0.693
65 247586_at AT5G60660 PIP2;4, plasma membrane intrinsic protein 2;4, PIP2F 0.207 0.236
66 264434_at AT1G10340 [Ankyrin repeat family protein] 0.207 -0.287
67 252862_at AT4G39830 [Cupredoxin superfamily protein] 0.205 -0.087
68 260926_at AT1G21360 GLTP2, glycolipid transfer protein 2 0.204 -0.980
69 252536_at AT3G45700 [Major facilitator superfamily protein] 0.203 -0.021
70 261308_at AT1G48480 RKL1, receptor-like kinase 1 0.201 -0.225
71 251401_at AT3G60270 [Cupredoxin superfamily protein] 0.200 -0.714
72 252987_at AT4G38390 RHS17, root hair specific 17 0.199 0.224
73 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] 0.199 0.479
74 253957_at AT4G26320 AGP13, arabinogalactan protein 13 0.196 -0.080
75 254344_at AT4G22110 [GroES-like zinc-binding dehydrogenase family protein] 0.195 -0.576
76 265124_at AT1G55430 [Cysteine/Histidine-rich C1 domain family protein] 0.195 -0.670
77 254909_at AT4G11210 [Disease resistance-responsive (dirigent-like protein) family protein] 0.193 -0.553
78 254110_at AT4G25260 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.192 -0.208
79 252076_at AT3G51660 [Tautomerase/MIF superfamily protein] 0.190 -1.015
80 245034_at AT2G26390 [Serine protease inhibitor (SERPIN) family protein] 0.188 0.076
81 267209_at AT2G30930 unknown 0.188 -0.359
82 252217_at AT3G50140 unknown 0.188 -0.786
83 246510_at AT5G15410 ATCNGC2, CYCLIC NUCLEOTIDE-GATED CHANNEL 2, CNGC2, CYCLIC NUCLEOTIDE GATED CHANNEL 2, DND1, DEFENSE NO DEATH 1 0.185 -0.154
84 267367_at AT2G44210 unknown 0.184 0.165
85 256600_at AT3G14850 TBL41, TRICHOME BIREFRINGENCE-LIKE 41 0.184 0.168
86 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.183 -0.800
87 259854_at AT1G72200 [RING/U-box superfamily protein] 0.182 -0.208
88 252594_at AT3G45680 [Major facilitator superfamily protein] 0.181 -0.407
89 251744_at AT3G56010 unknown 0.181 0.536
90 257670_at AT3G20340 unknown 0.181 -0.492
91 266611_at AT2G14960 GH3.1 -0.953 -0.688
92 267411_at AT2G34930 [disease resistance family protein / LRR family protein] -0.843 -0.352
93 245140_at AT2G45420 LBD18, LOB domain-containing protein 18 -0.727 -0.855
94 255695_at AT4G00080 UNE11, unfertilized embryo sac 11 -0.718 -0.139
95 251565_at AT3G58190 ASL16, ASYMMETRIC LEAVES 2-LIKE 16, LBD29, lateral organ boundaries-domain 29 -0.715 -0.543
96 245076_at AT2G23170 GH3.3 -0.653 -0.319
97 259735_at AT1G64405 unknown -0.637 -0.501
98 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 -0.605 -1.057
99 267147_at AT2G38240 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.601 -0.617
100 258769_at AT3G10870 ATMES17, ARABIDOPSIS THALIANA METHYL ESTERASE 17, MES17, methyl esterase 17 -0.569 -0.674
101 253047_at AT4G37295 unknown -0.563 -0.469
102 264773_at AT1G22900 [Disease resistance-responsive (dirigent-like protein) family protein] -0.544 -0.099
103 248164_at AT5G54490 PBP1, pinoid-binding protein 1 -0.534 -0.355
104 260364_at AT1G70560 CKRC1, cytokinin induced root curling 1, SAV3, SHADE AVOIDANCE 3, TAA1, tryptophan aminotransferase of Arabidopsis 1, WEI8, WEAK ETHYLENE INSENSITIVE 8 -0.473 0.757
105 257026_at AT3G19200 unknown -0.466 -0.152
106 247151_at AT5G65640 bHLH093, beta HLH protein 93 -0.466 0.143
107 262045_at AT1G80240 DGR1, DUF642 L-GalL responsive gene 1 -0.464 -0.847
108 263575_at AT2G17070 unknown -0.444 -0.441
109 262448_at AT1G49450 [Transducin/WD40 repeat-like superfamily protein] -0.443 -0.024
110 263959_at AT2G36210 SAUR45, SMALL AUXIN UPREGULATED RNA 45 -0.441 -0.857
111 245567_at AT4G14630 GLP9, germin-like protein 9 -0.439 -0.722
112 258618_at AT3G02885 GASA5, GAST1 protein homolog 5 -0.422 -0.065
113 259027_at AT3G09280 unknown -0.407 -1.014
114 264953_at AT1G77120 ADH, ALCOHOL DEHYDROGENASE, ADH1, alcohol dehydrogenase 1, ATADH, ARABIDOPSIS THALIANA ALCOHOL DEHYDROGENASE, ATADH1 -0.383 0.527
115 257386_at AT2G42440 ASL15, ASYMMETRIC LEAVES 2-like 15, LBD17, LOB domain-containing protein 17 -0.358 0.116
116 254761_at AT4G13195 CLE44, CLAVATA3/ESR-RELATED 44 -0.346 -0.398
117 244936_at ATCG01100 NDHA -0.336 0.379
118 260394_at AT1G74080 ATMYB122, MYB DOMAIN PROTEIN 122, MYB122, myb domain protein 122 -0.335 -0.344
119 246798_at AT5G26930 GATA23, GATA transcription factor 23 -0.332 0.218
120 266974_at AT2G39370 MAKR4, MEMBRANE-ASSOCIATED KINASE REGULATOR 4 -0.325 -0.692
121 256702_at AT3G30380 [alpha/beta-Hydrolases superfamily protein] -0.321 -0.106
122 253908_at AT4G27260 GH3.5, WES1 -0.320 -0.363
123 253203_at AT4G34710 ADC2, arginine decarboxylase 2, ATADC2, SPE2 -0.309 1.325
124 262643_at AT1G62770 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.304 -0.145
125 255658_at AT4G00770 TRM9, TON1 Recruiting Motif 9 -0.302 -0.224
126 248163_at AT5G54510 DFL1, DWARF IN LIGHT 1, GH3.6, Gretchen Hagen3.6 -0.291 0.730
127 257643_at AT3G25730 EDF3, ethylene response DNA binding factor 3 -0.289 0.259
128 249992_at AT5G18560 PUCHI -0.287 -1.345
129 247362_at AT5G63140 ATPAP29, purple acid phosphatase 29, PAP29, PAP29, purple acid phosphatase 29 -0.284 0.431
130 265117_at AT1G62500 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] -0.281 0.061
131 247450_at AT5G62350 [Plant invertase/pectin methylesterase inhibitor superfamily protein] -0.273 0.637
132 258718_at AT3G09760 [RING/U-box superfamily protein] -0.272 -0.177
133 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.269 -0.272
134 260528_at AT2G47260 ATWRKY23, WRKY DNA-BINDING PROTEIN 23, WRKY23, WRKY DNA-binding protein 23 -0.268 0.295
135 262001_at AT1G33790 [jacalin lectin family protein] -0.266 0.967
136 265828_at AT2G14520 unknown -0.255 0.001
137 257919_at AT3G23250 ATMYB15, MYB DOMAIN PROTEIN 15, ATY19, MYB15, myb domain protein 15 -0.254 0.416
138 245141_at AT2G45400 BEN1, BRI1-5 ENHANCED 1 -0.253 0.487
139 253975_at AT4G26600 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.253 -0.091
140 266507_at AT2G47860 SETH6 -0.251 -1.423
141 266908_at AT2G34650 ABR, ABRUPTUS, PID, PINOID -0.250 -0.003
142 254020_at AT4G25700 B1, BCH1, BETA CAROTENOID HYDROXYLASE 1, BETA-OHASE 1, beta-hydroxylase 1, chy1 -0.249 0.664
143 253180_at AT4G35210 unknown -0.249 -1.017
144 252133_at AT3G50900 unknown -0.242 1.053
145 247953_at AT5G57260 CYP71B10, cytochrome P450, family 71, subfamily B, polypeptide 10 -0.233 -0.441
146 250611_at AT5G07200 ATGA20OX3, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 3, GA20OX3, gibberellin 20-oxidase 3, YAP169 -0.233 -0.582
147 254756_at AT4G13235 EDA21, embryo sac development arrest 21 -0.232 0.225
148 255911_at AT1G66930 [Protein kinase superfamily protein] -0.232 -1.019
149 246488_at AT5G16010 [3-oxo-5-alpha-steroid 4-dehydrogenase family protein] -0.227 0.144
150 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.226 0.753
151 253660_at AT4G30140 CDEF1, CUTICLE DESTRUCTING FACTOR 1 -0.225 0.589
152 264471_at AT1G67120 AtMDN1, MDN1, MIDASIN 1 -0.216 0.869
153 245416_at AT4G17350 unknown -0.214 -0.050
154 250781_at AT5G05410 DREB2, DEHYDRATION-RESPONSIVE ELEMENT BINDING PROTEIN 2, DREB2A, DRE-binding protein 2A -0.213 -0.165
155 266269_at AT2G29480 ATGSTU2, glutathione S-transferase tau 2, GST20, GLUTATHIONE S-TRANSFERASE 20, GSTU2, glutathione S-transferase tau 2 -0.211 -1.486
156 253104_at AT4G36010 [Pathogenesis-related thaumatin superfamily protein] -0.210 -0.099
157 247097_at AT5G66460 AtMAN7, MAN7, endo-beta-mannase 7 -0.208 0.837
158 250062_at AT5G17760 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] -0.206 0.267
159 247802_at AT5G58580 ATL63, TOXICOS EN LEVADURA 63, TL63, TOXICOS EN LEVADURA 63 -0.205 -0.244
160 259426_at AT1G01470 LEA14, LATE EMBRYOGENESIS ABUNDANT 14, LSR3, LIGHT STRESS-REGULATED 3 -0.205 0.241
161 248205_at AT5G54300 unknown -0.204 0.820
162 252305_at AT3G49240 emb1796, embryo defective 1796 -0.201 0.678
163 254667_at AT4G18280 [glycine-rich cell wall protein-related] -0.200 -0.604
164 247178_at AT5G65205 [NAD(P)-binding Rossmann-fold superfamily protein] -0.196 1.007
165 261427_at AT1G18670 IBS1, IMPAIRED IN BABA-INDUCED STERILITY 1 -0.195 0.031
166 260841_at AT1G29195 unknown -0.194 0.405
167 256030_at AT1G34110 [Leucine-rich receptor-like protein kinase family protein] -0.194 -0.040
168 265588_at AT2G19970 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] -0.194 -0.305
169 263931_at AT2G36220 unknown -0.191 0.308
170 255064_at AT4G08950 EXO, EXORDIUM -0.191 1.041
171 262784_at AT1G10760 GWD, GWD1, SEX1, STARCH EXCESS 1, SOP, SOP1 -0.191 0.588
172 252114_at AT3G51450 [Calcium-dependent phosphotriesterase superfamily protein] -0.190 -0.275
173 250091_at AT5G17340 [Putative membrane lipoprotein] -0.188 -0.616
174 258277_at AT3G26830 CYP71B15, PAD3, PHYTOALEXIN DEFICIENT 3 -0.188 -0.247
175 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 -0.188 0.393
176 261970_at AT1G65960 GAD2, glutamate decarboxylase 2 -0.186 0.171
177 247944_at AT5G57100 [Nucleotide/sugar transporter family protein] -0.186 -0.324
178 266663_at AT2G25790 SKM1, STERILITY-REGULATING KINASE MEMBER 1 -0.184 -0.399
179 259363_at AT1G13270 MAP1B, METHIONINE AMINOPEPTIDASE 1B, MAP1C, methionine aminopeptidase 1B -0.180 0.722