4.0:Information of module
ATR1 OE
In comparison with Elevated CO2 LIMITING N DAY help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009056 catabolic process BP 2.385e-06
GO:0030258 lipid modification BP 9.399e-06
GO:0006520 cellular amino acid metabolic process BP 1.180e-05
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0006996 organelle organization BP 3.340e-20
GO:0071840 cellular component organization or bioge... BP 7.015e-20
GO:0006725 cellular aromatic compound metabolic pro... BP 1.421e-17
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
ATR1 OE		 Log2 signal ratio
Elevated CO2 LIMITING N DAY
1 251428_at AT3G60140 BGLU30, BETA GLUCOSIDASE 30, DIN2, DARK INDUCIBLE 2, SRG2, SENESCENCE-RELATED GENE 2 1.501 0.001
2 252269_at AT3G49580 LSU1, RESPONSE TO LOW SULFUR 1 1.484 -0.150
3 248676_at AT5G48850 ATSDI1, SULPHUR DEFICIENCY-INDUCED 1 1.306 -0.121
4 267389_at AT2G44460 BGLU28, beta glucosidase 28 1.206 -0.025
5 246884_at AT5G26220 AtGGCT2;1, GGCT2;1, gamma-glutamyl cyclotransferase 2;1 1.176 -0.009
6 255302_at AT4G04830 ATMSRB5, methionine sulfoxide reductase B5, MSRB5, methionine sulfoxide reductase B5 1.148 -0.027
7 258983_at AT3G08860 PYD4, PYRIMIDINE 4 0.946 -0.039
8 254201_at AT4G24130 unknown 0.934 -0.069
9 264887_at AT1G23120 [Polyketide cyclase/dehydrase and lipid transport superfamily protein] 0.916 0.016
10 262646_at AT1G62800 ASP4, aspartate aminotransferase 4 0.909 -0.047
11 262133_at AT1G78000 SEL1, SELENATE RESISTANT 1, SULTR1;2, sulfate transporter 1;2 0.895 -0.046
12 258322_at AT3G22740 HMT3, homocysteine S-methyltransferase 3 0.876 -0.026
13 262607_at AT1G13990 unknown 0.860 0.091
14 245550_at AT4G15330 CYP705A1, cytochrome P450, family 705, subfamily A, polypeptide 1 0.835 -0.043
15 245528_at AT4G15530 PPDK, pyruvate orthophosphate dikinase 0.774 0.057
16 263890_at AT2G37030 SAUR46, SMALL AUXIN UPREGULATED RNA 46 0.739 -0.012
17 249752_at AT5G24660 LSU2, RESPONSE TO LOW SULFUR 2 0.732 -0.020
18 258975_at AT3G01970 ATWRKY45, WRKY DNA-BINDING PROTEIN 45, WRKY45, WRKY DNA-binding protein 45 0.732 0.022
19 261181_at AT1G34580 [Major facilitator superfamily protein] 0.646 0.055
20 247600_at AT5G60890 ATMYB34, ATR1, ALTERED TRYPTOPHAN REGULATION 1, MYB34, myb domain protein 34 0.628 -0.065
21 259596_at AT1G28130 GH3.17 0.572 0.012
22 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.560 -0.135
23 259773_at AT1G29500 SAUR66, SMALL AUXIN UPREGULATED RNA 66 0.557 0.104
24 250455_at AT5G09980 PROPEP4, elicitor peptide 4 precursor 0.555 -0.033
25 266525_at AT2G16970 MEE15, maternal effect embryo arrest 15 0.553 0.036
26 266915_at AT2G45870 [Bestrophin-like protein] 0.525 -0.010
27 267464_at AT2G19150 [Pectin lyase-like superfamily protein] 0.492 -0.022
28 256300_at AT1G69490 ANAC029, Arabidopsis NAC domain containing protein 29, ATNAP, NAC-LIKE, ACTIVATED BY AP3/PI, NAP, NAC-like, activated by AP3/PI 0.489 0.055
29 246595_at AT5G14780 FDH, formate dehydrogenase 0.484 -0.020
30 246789_at AT5G27600 ATLACS7, LACS7, long-chain acyl-CoA synthetase 7 0.471 0.043
31 266167_at AT2G38860 DJ-1e, DJ1E, YLS5 0.466 0.028
32 254343_at AT4G21990 APR3, APS reductase 3, ATAPR3, PRH-26, PRH26, PAPS REDUCTASE HOMOLOG 26 0.466 0.039
33 245855_at AT5G13550 SULTR4;1, sulfate transporter 4.1 0.465 0.044
34 255037_at AT4G09460 AtMYB6, myb domain protein 6, MYB6, myb domain protein 6 0.463 -0.015
35 248282_at AT5G52900 MAKR6, MEMBRANE-ASSOCIATED KINASE REGULATOR 6 0.460 0.029
36 263900_at AT2G36290 [alpha/beta-Hydrolases superfamily protein] 0.455 -0.001
37 258038_at AT3G21260 GLTP3, GLYCOLIPID TRANSFER PROTEIN 3 0.447 -0.048
38 263098_at AT2G16005 [MD-2-related lipid recognition domain-containing protein] 0.431 -0.056
39 249910_at AT5G22630 ADT5, arogenate dehydratase 5 0.428 0.035
40 252921_at AT4G39030 EDS5, ENHANCED DISEASE SUSCEPTIBILITY 5, SCORD3, susceptible to coronatine-deficient Pst DC3000 3, SID1, SALICYLIC ACID INDUCTION DEFICIENT 1 0.427 0.074
41 253842_at AT4G27860 MEB1, MEMBRANE OF ER BODY 1 0.425 -0.002
42 249372_at AT5G40760 G6PD6, glucose-6-phosphate dehydrogenase 6 0.424 0.025
43 262444_at AT1G47480 [alpha/beta-Hydrolases superfamily protein] 0.423 0.006
44 251975_at AT3G53230 AtCDC48B, cell division cycle 48B 0.418 -0.059
45 254015_at AT4G26140 BGAL12, beta-galactosidase 12 0.418 0.017
46 262616_at AT1G06620 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.409 -0.004
47 264788_at AT2G17880 DJC24, DNA J protein C24 0.408 0.009
48 263807_at AT2G04400 [Aldolase-type TIM barrel family protein] 0.405 0.041
49 246432_at AT5G17490 AtRGL3, RGL3, RGA-like protein 3 0.402 0.008
50 264580_at AT1G05340 unknown 0.400 0.067
51 253332_at AT4G33420 [Peroxidase superfamily protein] 0.393 -0.029
52 250738_at AT5G05730 AMT1, A-METHYL TRYPTOPHAN RESISTANT 1, ASA1, anthranilate synthase alpha subunit 1, JDL1, JASMONATE-INDUCED DEFECTIVE LATERAL ROOT 1, TRP5, TRYPTOPHAN BIOSYNTHESIS 5, WEI2, WEAK ETHYLENE INSENSITIVE 2 0.392 0.028
53 255285_at AT4G04630 unknown 0.392 -0.056
54 248004_at AT5G56230 PRA1.G2, prenylated RAB acceptor 1.G2 0.384 0.040
55 258487_at AT3G02550 LBD41, LOB domain-containing protein 41 0.383 0.109
56 250476_at AT5G10140 AGL25, AGAMOUS-like 25, FLC, FLOWERING LOCUS C, FLF, FLOWERING LOCUS F, RSB6, REDUCED STEM BRANCHING 6 0.382 0.018
57 253343_at AT4G33540 [metallo-beta-lactamase family protein] 0.382 0.087
58 259708_at AT1G77420 [alpha/beta-Hydrolases superfamily protein] 0.373 0.050
59 262049_at AT1G80180 unknown 0.367 -0.011
60 252040_at AT3G52060 AtGnTL, GnTL, beta-1,6-N-acetylglucosaminyl transferase-like 0.359 0.002
61 253908_at AT4G27260 GH3.5, WES1 0.358 0.083
62 264447_at AT1G27300 unknown 0.356 0.004
63 258300_at AT3G23340 ckl10, casein kinase I-like 10 0.356 -0.024
64 261269_at AT1G26690 [emp24/gp25L/p24 family/GOLD family protein] 0.352 -0.010
65 252652_at AT3G44720 ADT4, arogenate dehydratase 4 0.344 0.020
66 257017_at AT3G19620 [Glycosyl hydrolase family protein] 0.344 0.149
67 245794_at AT1G32170 XTH30, xyloglucan endotransglucosylase/hydrolase 30, XTR4, xyloglucan endotransglycosylase 4 0.339 0.083
68 258815_at AT3G04000 [NAD(P)-binding Rossmann-fold superfamily protein] 0.337 -0.013
69 246476_at AT5G16730 [LOCATED IN: chloroplast] 0.336 0.005
70 252250_at AT3G49790 [Carbohydrate-binding protein] 0.331 -0.029
71 245277_at AT4G15550 IAGLU, indole-3-acetate beta-D-glucosyltransferase 0.329 0.022
72 262844_at AT1G14890 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.328 -0.077
73 258021_at AT3G19380 PUB25, plant U-box 25 0.323 -0.084
74 264246_at AT1G60140 ATTPS10, trehalose phosphate synthase, TPS10, trehalose phosphate synthase, TPS10, TREHALOSE PHOSPHATE SYNTHASE 10 0.323 0.000
75 258275_at AT3G15760 unknown 0.317 -0.002
76 258895_at AT3G05600 [alpha/beta-Hydrolases superfamily protein] -0.698 -0.045
77 264758_at AT1G61340 AtFBS1, FBS1, F-box stress induced 1 -0.651 -0.015
78 261684_at AT1G47400 unknown -0.622 0.218
79 256675_at AT3G52170 [DNA binding] -0.581 -0.172
80 258034_at AT3G21300 [RNA methyltransferase family protein] -0.534 -0.148
81 250433_at AT5G10400 H3.1, histone 3.1 -0.526 -0.117
82 258419_at AT3G16670 [Pollen Ole e 1 allergen and extensin family protein] -0.455 0.235
83 251476_at AT3G59670 unknown -0.455 -0.096
84 248891_at AT5G46280 MCM3, MINICHROMOSOME MAINTENANCE 3 -0.454 -0.091
85 264188_at AT1G54690 G-H2AX, GAMMA H2AX, GAMMA-H2AX, gamma histone variant H2AX, H2AXB, HTA3, histone H2A 3 -0.438 -0.061
86 253788_at AT4G28680 AtTYDC, TYDC, L-tyrosine decarboxylase, TYRDC, L-tyrosine decarboxylase, TYRDC1, L-TYROSINE DECARBOXYLASE 1 -0.436 0.009
87 250418_at AT5G11240 [transducin family protein / WD-40 repeat family protein] -0.419 -0.031
88 257264_at AT3G22060 [Receptor-like protein kinase-related family protein] -0.408 -0.037
89 262098_at AT1G56170 ATHAP5B, HAP5B, NF-YC2, nuclear factor Y, subunit C2 -0.400 -0.030
90 261410_at AT1G07610 MT1C, metallothionein 1C -0.394 -0.043
91 254452_at AT4G21100 DDB1B, damaged DNA binding protein 1B -0.386 -0.070
92 263352_at AT2G22080 unknown -0.381 -0.079
93 246303_at AT3G51870 [Mitochondrial substrate carrier family protein] -0.381 -0.103
94 256787_at AT3G13790 ATBFRUCT1, ATCWINV1, ARABIDOPSIS THALIANA CELL WALL INVERTASE 1 -0.381 -0.094
95 267083_at AT2G41100 ATCAL4, ARABIDOPSIS THALIANA CALMODULIN LIKE 4, TCH3, TOUCH 3 -0.373 -0.000
96 261443_at AT1G28480 GRX480, roxy19 -0.372 -0.047
97 256144_at AT1G48630 RACK1B, receptor for activated C kinase 1B, RACK1B_AT, receptor for activated C kinase 1B -0.357 -0.059
98 246920_at AT5G25090 AtENODL13, ENODL13, early nodulin-like protein 13 -0.353 -0.000
99 264000_at AT2G22500 ATPUMP5, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, DIC1, DICARBOXYLATE CARRIER 1, UCP5, uncoupling protein 5 -0.350 -0.031
100 264262_at AT1G09200 H3.1, histone 3.1 -0.344 -0.094
101 264061_at AT2G27970 CKS2, CDK-subunit 2 -0.341 -0.085
102 255874_at AT2G40550 ETG1, E2F target gene 1 -0.339 -0.076
103 255513_at AT4G02060 MCM7, PRL, PROLIFERA -0.337 -0.079
104 265097_at AT1G04020 ATBARD1, BARD1, breast cancer associated RING 1, ROW1 -0.329 -0.135
105 263882_at AT2G21790 ATRNR1, RIBONUCLEOTIDE REDUCTASE LARGE SUBUNIT 1, CLS8, CRINKLY LEAVES 8, DPD2, defective in pollen organelle DNA degradation 2, R1, RIBONUCLEOTIDE REDUCTASE 1, RNR1, ribonucleotide reductase 1 -0.326 -0.079
106 247168_at AT5G65860 [ankyrin repeat family protein] -0.323 -0.032
107 266166_at AT2G28080 [UDP-Glycosyltransferase superfamily protein] -0.322 -0.008
108 247192_at AT5G65360 H3.1, histone 3.1 -0.318 -0.072
109 258707_at AT3G09480 [Histone superfamily protein] -0.317 -0.078
110 253535_at AT4G31550 ATWRKY11, WRKY11, WRKY DNA-binding protein 11 -0.315 -0.019
111 262819_at AT1G11600 CYP77B1, cytochrome P450, family 77, subfamily B, polypeptide 1 -0.313 -0.012
112 260683_at AT1G17560 HLL, HUELLENLOS -0.310 -0.107
113 258089_at AT3G14740 [RING/FYVE/PHD zinc finger superfamily protein] -0.308 -0.085
114 246315_at AT3G56870 unknown -0.306 -0.091
115 247651_at AT5G59870 HTA6, histone H2A 6 -0.302 -0.091
116 263047_at AT2G17630 PSAT2, phosphoserine aminotransferase 2 -0.296 -0.017
117 257735_at AT3G27400 [Pectin lyase-like superfamily protein] -0.296 -0.181
118 261330_at AT1G44900 ATMCM2, MCM2, MINICHROMOSOME MAINTENANCE 2 -0.294 -0.109
119 249754_at AT5G24530 DMR6, DOWNY MILDEW RESISTANT 6 -0.291 -0.036
120 246088_at AT5G20600 unknown -0.290 0.004
121 251442_at AT3G59980 [Nucleic acid-binding, OB-fold-like protein] -0.282 -0.051
122 263452_at AT2G22190 TPPE, trehalose-6-phosphate phosphatase E -0.279 0.024
123 249276_at AT5G41880 POLA3, POLA4 -0.279 -0.101
124 253996_at AT4G26110 ATNAP1;1, ARABIDOPSIS THALIANA NUCLEOSOME ASSEMLY PROTEIN 1;1, NAP1;1, nucleosome assembly protein1;1 -0.276 -0.067
125 257809_at AT3G27060 ATTSO2, TSO2, TSO MEANING 'UGLY' IN CHINESE 2 -0.263 -0.052
126 262180_at AT1G78050 PGM, phosphoglycerate/bisphosphoglycerate mutase -0.261 -0.143
127 258480_at AT3G02640 unknown -0.261 -0.055
128 258554_at AT3G06980 [DEA(D/H)-box RNA helicase family protein] -0.258 -0.055
129 252361_at AT3G48490 unknown -0.258 -0.123
130 252661_at AT3G44450 unknown -0.258 0.043
131 264895_at AT1G23100 [GroES-like family protein] -0.256 -0.088
132 253490_at AT4G31790 [Tetrapyrrole (Corrin/Porphyrin) Methylases] -0.254 0.004
133 252915_at AT4G38810 [Calcium-binding EF-hand family protein] -0.253 -0.004
134 248984_at AT5G45140 NRPC2, nuclear RNA polymerase C2 -0.252 -0.023
135 247482_at AT5G62410 ATCAP-E1, ATSMC4, SMC2, structural maintenance of chromosomes 2, TTN3, TITAN 3 -0.251 -0.016
136 258534_at AT3G06730 TRX P, thioredoxin putative plastidic, TRX z, Thioredoxin z -0.247 -0.033
137 256230_at AT3G12340 [FKBP-like peptidyl-prolyl cis-trans isomerase family protein] -0.244 0.007
138 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.242 -0.115
139 253566_at AT4G31210 [DNA topoisomerase, type IA, core] -0.240 -0.047
140 256666_at AT3G20670 HTA13, histone H2A 13 -0.237 -0.066
141 263382_at AT2G40230 [HXXXD-type acyl-transferase family protein] -0.236 -0.025
142 266079_at AT2G37860 LCD1, LOWER CELL DENSITY 1 -0.235 -0.026
143 256633_at AT3G28340 GATL10, galacturonosyltransferase-like 10, GolS8, galactinol synthase 8 -0.233 -0.037
144 252147_at AT3G51270 [protein serine/threonine kinases] -0.233 -0.051
145 245404_at AT4G17610 [tRNA/rRNA methyltransferase (SpoU) family protein] -0.232 -0.090
146 263939_at AT2G36070 ATTIM44-2, translocase inner membrane subunit 44-2, TIM44-2, translocase inner membrane subunit 44-2 -0.232 -0.022
147 263379_at AT2G40140 ATSZF2, CZF1, SZF2, (SALT-INDUCIBLE ZINC FINGER 2, ZFAR1 -0.231 0.033
148 245296_at AT4G16370 oligopeptide transporter -0.229 0.080
149 249946_at AT5G19170 unknown -0.226 -0.034