4.0:Information of module
35S:MYB28 like miR
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006354 DNA-templated transcription, elongation BP 1.171e-19
GO:0015979 photosynthesis BP 3.884e-14
GO:0006091 generation of precursor metabolites and ... BP 3.002e-09
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0010050 vegetative phase change BP 3.151e-04
GO:0044262 cellular carbohydrate metabolic process BP 4.958e-04
GO:0044038 cell wall macromolecule biosynthetic pro... BP 2.019e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
35S:MYB28 like miR		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 245013_at ATCG00470 ATPE, ATP synthase epsilon chain 1.614 -0.070
2 244960_at ATCG01020 RPL32, ribosomal protein L32 1.556 0.033
3 244935_at ATCG01090 NDHI 1.480 0.033
4 244969_at ATCG00650 RPS18, ribosomal protein S18 1.448 0.019
5 244986_at ATCG00820 RPS19, ribosomal protein S19 1.417 -0.182
6 244984_at ATCG00800 [RESISTANCE TO PSEUDOMONAS SYRINGAE 3 (RPS3)] 1.411 -0.045
7 244971_at ATCG00670 CLPP1, CASEINOLYTIC PROTEASE P 1, PCLPP, plastid-encoded CLP P 1.310 -0.059
8 244962_at ATCG01050 NDHD 1.293 0.051
9 245006_at ATCG00340 PSAB 1.278 -0.285
10 245017_at ATCG00510 PSAI, photsystem I subunit I 1.259 -0.148
11 244965_at ATCG00590 ORF31 1.257 -0.384
12 245014_at ATCG00480 ATPB, ATP synthase subunit beta, PB, ATP synthase subunit beta 1.249 -0.103
13 244976_at ATCG00720 PETB, photosynthetic electron transfer B 1.234 -0.062
14 245024_at ATCG00120 ATPA, ATP synthase subunit alpha 1.155 -0.601
15 245001_at ATCG00220 PSBM, photosystem II reaction center protein M 1.110 0.036
16 244968_at ATCG00640 RPL33, ribosomal protein L33 1.082 -0.040
17 245021_at ATCG00550 PSBJ, photosystem II reaction center protein J 1.030 0.053
18 244996_at ATCG00160 RPS2, ribosomal protein S2 1.009 -0.166
19 244998_at ATCG00180 RPOC1 0.998 -0.219
20 245010_at ATCG00420 NDHJ, NADH dehydrogenase subunit J 0.983 -0.118
21 245009_at ATCG00380 RPS4, chloroplast ribosomal protein S4 0.977 -0.168
22 244975_at ATCG00710 PSBH, photosystem II reaction center protein H 0.965 -0.155
23 254832_at AT4G12490 [Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein] 0.910 0.024
24 244964_at ATCG00580 PSBE, photosystem II reaction center protein E 0.884 0.070
25 245004_at ATCG00300 YCF9 0.875 -0.104
26 245020_at ATCG00540 PETA, photosynthetic electron transfer A 0.853 -0.220
27 244970_at ATCG00660 RPL20, ribosomal protein L20 0.852 -0.359
28 244938_at ATCG01120 RPS15, chloroplast ribosomal protein S15 0.768 -0.106
29 245023_at ATCG00080 PSBI, photosystem II reaction center protein I 0.662 -0.096
30 244929_at ATMG00580 NAD4, NADH dehydrogenase subunit 4 0.576 0.001
31 245012_at ATCG00440 NDHC 0.575 -0.002
32 244978_at ATCG00740 RPOA, RNA polymerase subunit alpha 0.521 0.029
33 252965_at AT4G38860 SAUR16, SMALL AUXIN UPREGULATED RNA 16 0.500 -0.060
34 260367_at AT1G69760 unknown 0.443 0.039
35 259783_at AT1G29510 SAUR67, SMALL AUXIN UPREGULATED RNA 67 0.432 0.038
36 246932_at AT5G25190 ESE3, ethylene and salt inducible 3 0.412 -0.015
37 254317_at AT4G22510 unknown 0.409 0.025
38 246519_at AT5G15780 [Pollen Ole e 1 allergen and extensin family protein] 0.406 -0.024
39 265411_at AT2G16630 [Pollen Ole e 1 allergen and extensin family protein] 0.390 0.025
40 260287_at AT1G80440 KFB20, Kelch repeat F-box 20, KMD1, KISS ME DEADLY 1 0.374 -0.181
41 254954_at AT4G10910 unknown 0.367 0.057
42 247540_at AT5G61590 [Integrase-type DNA-binding superfamily protein] 0.360 -0.205
43 257615_at AT3G26510 [Octicosapeptide/Phox/Bem1p family protein] 0.354 -0.116
44 264898_at AT1G23205 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.349 0.008
45 258919_at AT3G10525 LGO, LOSS OF GIANT CELLS FROM ORGANS, SMR1, SIAMESE RELATED 1 0.348 0.120
46 248348_at AT5G52190 [Sugar isomerase (SIS) family protein] 0.348 0.048
47 251342_at AT3G60690 SAUR59, SMALL AUXIN UPREGULATED RNA 59 0.342 -0.005
48 263443_at AT2G28630 KCS12, 3-ketoacyl-CoA synthase 12 0.342 -0.024
49 253476_at AT4G32300 SD2-5, S-domain-2 5 0.327 -0.031
50 260522_x_at AT2G41730 unknown 0.289 0.033
51 248759_at AT5G47610 [RING/U-box superfamily protein] 0.283 -0.009
52 252740_at AT3G43270 [Plant invertase/pectin methylesterase inhibitor superfamily] 0.271 0.003
53 247013_at AT5G67480 ATBT4, BT4, BTB and TAZ domain protein 4 0.267 -0.044
54 263664_at AT1G04250 AXR3, AUXIN RESISTANT 3, IAA17, indole-3-acetic acid inducible 17 0.265 0.012
55 244901_at ATMG00640 ORF25 0.265 0.050
56 267238_at AT2G44130 KMD3, KISS ME DEADLY 3 0.262 -0.002
57 247488_at AT5G61820 unknown 0.262 -0.007
58 255193_at AT4G07400 VFB3, VIER F-box proteine 3 0.261 -0.050
59 253255_at AT4G34760 SAUR50, SMALL AUXIN UPREGULATED RNA 50 0.258 -0.020
60 264948_at AT1G77030 [hydrolases, acting on acid anhydrides, in phosphorus-containing anhydrides] -0.503 -0.012
61 262322_at AT1G27590 unknown -0.418 0.026
62 252986_at AT4G38380 [MATE efflux family protein] -0.372 -0.000
63 263258_at AT1G10540 ATNAT8, NAT8, nucleobase-ascorbate transporter 8 -0.343 0.019
64 253913_at AT4G27370 ATVIIIB, MYOSIN VIII B, VIIIB -0.343 0.016
65 251375_at AT3G60410 unknown -0.321 0.053
66 264191_at AT1G54730 [Major facilitator superfamily protein] -0.316 0.036
67 247854_at AT5G58200 [Calcineurin-like metallo-phosphoesterase superfamily protein] -0.303 0.045
68 265272_at AT2G28350 ARF10, auxin response factor 10 -0.299 0.052
69 250487_at AT5G09690 ATMGT7, ARABIDOPSIS THALIANA MAGNESIUM TRANSPORTER 7, MGT7, magnesium transporter 7, MRS2-7 -0.294 0.000
70 264835_at AT1G03550 AtSCAMP4, SCAMP4, Secretory carrier membrane protein 4 -0.288 0.120
71 261802_at AT1G30550 [S-adenosyl-L-methionine-dependent methyltransferases superfamily protein] -0.284 0.112
72 260999_at AT1G26580 unknown -0.267 0.007
73 263230_at AT1G05670 [Pentatricopeptide repeat (PPR-like) superfamily protein] -0.267 -0.009
74 254409_at AT4G21400 CRK28, cysteine-rich RLK (RECEPTOR-like protein kinase) 28 -0.265 0.018
75 256510_at AT1G33360 [ATP-dependent Clp protease] -0.258 -0.034
76 252679_at AT3G44260 AtCAF1a, CCR4- associated factor 1a, CAF1a, CCR4- associated factor 1a -0.255 0.073
77 264270_at AT1G60260 BGLU5, beta glucosidase 5 -0.255 0.098
78 262111_at AT1G02960 unknown -0.254 0.002
79 262671_at AT1G76040 CPK29, calcium-dependent protein kinase 29 -0.254 0.065
80 266108_at AT2G37900 [Major facilitator superfamily protein] -0.253 0.058
81 255529_at AT4G02120 [CTP synthase family protein] -0.249 -0.028
82 254094_at AT4G25120 ATSRS2, ARABIDOPSIS THALIANA SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2, SRS2, SUPPRESSOR OF RAD SIX-SCREEN MUTANT 2 -0.243 -0.033
83 259034_at AT3G09410 [Pectinacetylesterase family protein] -0.241 -0.013
84 266574_at AT2G23890 [HAD-superfamily hydrolase, subfamily IG, 5'-nucleotidase] -0.236 0.035
85 258663_at AT3G08670 unknown -0.233 -0.089
86 251968_at AT3G53100 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.231 -0.020
87 264697_at AT1G70210 ATCYCD1;1, CYCD1;1, CYCLIN D1;1 -0.230 0.019
88 260144_at AT1G71960 ABCG25, ATP-binding casette G25, ATABCG25, Arabidopsis thaliana ATP-binding cassette G25 -0.227 -0.019
89 250274_at AT5G13020 AtEML3, EML3, EMSY-like 3 -0.227 0.013
90 261294_at AT1G48430 [Dihydroxyacetone kinase] -0.226 -0.020
91 263538_at AT2G25010 [Aminotransferase-like, plant mobile domain family protein] -0.225 0.021
92 259049_at AT3G03370 unknown -0.223 -0.011
93 247389_at AT5G63490 [CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein] -0.216 -0.012
94 254445_at AT4G20930 [6-phosphogluconate dehydrogenase family protein] -0.214 0.031
95 267050_at AT2G41060 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.211 0.002
96 255703_at AT4G00040 [Chalcone and stilbene synthase family protein] -0.211 0.009
97 250572_at AT5G08210 MIR834A, microRNA834A -0.208 -0.066
98 245873_at AT1G26260 CIB5, cryptochrome-interacting basic-helix-loop-helix 5 -0.208 0.018
99 249391_at AT5G40140 [RING/U-box superfamily protein with ARM repeat domain] -0.208 0.052
100 264513_at AT1G09420 G6PD4, glucose-6-phosphate dehydrogenase 4 -0.207 -0.016
101 261013_at AT1G26440 ATUPS5, ureide permease 5, UPS5, UPS5, ureide permease 5 -0.206 0.033
102 257712_at AT3G27420 unknown -0.204 0.005
103 251594_at AT3G57630 [exostosin family protein] -0.204 0.016
104 261894_at AT1G80900 ATMGT1, MAGNESIUM TRANSPORTER 1, MGT1, magnesium transporter 1, MRS2-10 -0.202 0.015
105 249433_at AT5G39940 [FAD/NAD(P)-binding oxidoreductase family protein] -0.199 0.076
106 255236_at AT4G05520 ATEHD2, EPS15 homology domain 2, EHD2, EPS15 homology domain 2 -0.198 -0.022
107 254784_at AT4G12720 AtNUDT7, Arabidopsis thaliana Nudix hydrolase homolog 7, GFG1, GROWTH FACTOR GENE 1, NUDT7 -0.197 0.023
108 267331_at AT2G19280 [Pentatricopeptide repeat (PPR) superfamily protein] -0.196 0.024
109 261147_at AT1G19690 [NAD(P)-binding Rossmann-fold superfamily protein] -0.195 0.037
110 256888_at AT3G15160 unknown -0.195 -0.017
111 266783_at AT2G29130 ATLAC2, LAC2, laccase 2 -0.194 0.078
112 264049_at AT2G22390 ATRABA4E, RABA4E, RAB GTPase homolog A4E -0.192 0.058
113 263260_at AT1G10570 OTS2, OVERLY TOLERANT TO SALT 2, ULP1C, UB-LIKE PROTEASE 1C -0.192 0.008
114 246731_at AT5G27630 ACBP5, acyl-CoA binding protein 5, AtACBP5 -0.192 0.061
115 264780_at AT1G08720 ATEDR1, EDR1, ENHANCED DISEASE RESISTANCE 1 -0.191 -0.033
116 260974_at AT1G53440 [Leucine-rich repeat transmembrane protein kinase] -0.191 -0.025
117 255846_at AT2G33610 ATSWI3B, switch subunit 3, CHB2, CHROMATIN REMODELING COMPLEX SUBUNIT B, SWI3B, switch subunit 3 -0.191 0.041