4.0:Information of module
2h KNO3 Whole root
In comparison with Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg) help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0006875 cellular metal ion homeostasis BP 1.188e-03
GO:0055065 metal ion homeostasis BP 3.079e-03
GO:0098771 inorganic ion homeostasis BP 4.467e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0002831 regulation of response to biotic stimulu... BP 8.929e-04
GO:0032101 regulation of response to external stimu... BP 1.534e-03
GO:0006352 DNA-templated transcription, initiation BP 3.306e-03
･･･ ･･･ ･･･ ･･･
View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2h KNO3 Whole root		 Log2 signal ratio
Regenerating Stump Root Tip Cut 130 mm andn Recut 0 hrs Taking 70 mm of Stump (8 dpg)
1 262325_at AT1G64160 AtDIR5, DIR5, dirigent protein 5 0.593 -0.738
2 259388_at AT1G13420 ATST4B, ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, ST4B, sulfotransferase 4B 0.559 -0.578
3 262516_at AT1G17190 ATGSTU26, glutathione S-transferase tau 26, GSTU26, glutathione S-transferase tau 26 0.522 1.172
4 267526_at AT2G30570 PSBW, photosystem II reaction center W 0.517 0.282
5 265204_at AT2G36650 unknown 0.440 0.187
6 255886_at AT1G20340 DRT112, DNA-DAMAGE-REPAIR/TOLERATION PROTEIN 112, PETE2, PLASTOCYANIN 2 0.393 0.712
7 260831_at AT1G06830 [Glutaredoxin family protein] 0.391 -0.628
8 263539_at AT2G24850 TAT, TYROSINE AMINOTRANSFERASE, TAT3, tyrosine aminotransferase 3 0.377 0.004
9 253515_at AT4G31320 SAUR37, SMALL AUXIN UPREGULATED RNA 37 0.375 1.104
10 253161_at AT4G35770 ATSEN1, ARABIDOPSIS THALIANA SENESCENCE 1, DIN1, DARK INDUCIBLE 1, SEN1, SENESCENCE 1, SEN1, SENESCENCE ASSOCIATED GENE 1 0.343 0.222
11 249934_at AT5G22410 RHS18, root hair specific 18 0.336 0.438
12 248681_at AT5G48900 [Pectin lyase-like superfamily protein] 0.323 0.923
13 266391_at AT2G41290 SSL2, strictosidine synthase-like 2 0.313 1.017
14 247208_at AT5G64870 [SPFH/Band 7/PHB domain-containing membrane-associated protein family] 0.303 -0.001
15 253440_at AT4G32570 TIFY8, TIFY domain protein 8 0.276 -0.041
16 250034_at AT5G18280 APY2, apyrase 2, ATAPY2, apyrase 2 0.268 0.532
17 252442_at AT3G46940 DUT1, DUTP-PYROPHOSPHATASE-LIKE 1 0.264 0.473
18 260100_at AT1G73177 APC13, anaphase-promoting complex 13, BNS, BONSAI 0.251 0.206
19 253815_at AT4G28250 ATEXPB3, expansin B3, ATHEXP BETA 1.6, EXPB3, expansin B3 0.247 -0.004
20 247634_at AT5G60520 [Late embryogenesis abundant (LEA) protein-related] 0.247 1.083
21 250793_at AT5G05600 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] 0.247 -0.048
22 260529_at AT2G47400 CP12, CP12 DOMAIN-CONTAINING PROTEIN 1, CP12-1, CP12 domain-containing protein 1 0.244 -0.186
23 247074_at AT5G66590 [CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein] 0.243 0.976
24 267093_at AT2G38170 ATCAX1, CAX1, cation exchanger 1, RCI4, RARE COLD INDUCIBLE 4 0.237 0.084
25 251911_at AT3G53820 [C2H2 and C2HC zinc fingers superfamily protein] 0.237 -0.623
26 257704_at AT3G12720 ATMYB67, myb domain protein 67, ATY53, MYB67, MYB67, myb domain protein 67 -0.498 -0.157
27 262894_at AT1G59780 [NB-ARC domain-containing disease resistance protein] -0.346 -1.000
28 263013_at AT1G23380 KNAT6, KNOTTED1-like homeobox gene 6, KNAT6L, KNAT6S -0.339 -0.895
29 247179_at AT5G65320 [basic helix-loop-helix (bHLH) DNA-binding superfamily protein] -0.335 -0.581
30 255148_at AT4G08470 MAPKKK10, MEKK3, MAPK/ERK kinase kinase 3 -0.306 0.556
31 259455_x_at AT1G44030 [Cysteine/Histidine-rich C1 domain family protein] -0.293 -1.371
32 255059_at AT4G09420 [Disease resistance protein (TIR-NBS class)] -0.277 -0.059
33 261292_at AT1G36940 unknown -0.263 -0.599
34 265151_at AT1G51340 [MATE efflux family protein] -0.263 -1.072
35 249992_at AT5G18560 PUCHI -0.260 -1.186
36 255512_at AT4G02195 ATSYP42, ATTLG2B, SYP42, syntaxin of plants 42, TLG2B -0.253 -0.086
37 251820_at AT3G55040 GSTL2, glutathione transferase lambda 2 -0.246 -0.102
38 254147_at AT4G24270 EMB140, EMBRYO DEFECTIVE 140 -0.245 0.494
39 249422_at AT5G39760 AtHB23, homeobox protein 23, HB23, homeobox protein 23, ZHD10, ZINC FINGER HOMEODOMAIN 10 -0.242 0.061
40 260341_at AT1G69170 AtSPL6, SPL6, SQUAMOSA PROMOTER BINDING PROTEIN (SBP)-domain transcription factor 6 -0.226 0.325
41 262183_at AT1G77890 [DNA-directed RNA polymerase II protein] -0.222 -0.109
42 254944_at AT4G10930 unknown -0.222 -0.499
43 255870_at AT2G30280 DMS4, DEFECTIVE IN MERISTEM SILENCING 4, RDM4, RNA-directed DNA methylation 4 -0.218 -0.095
44 261654_at AT1G01920 [SET domain-containing protein] -0.213 1.014
45 264389_at AT1G11960 [ERD (early-responsive to dehydration stress) family protein] -0.213 -0.218
46 249907_at AT5G22750 RAD5, RAD5A -0.212 -0.394
47 248835_at AT5G47250 [LRR and NB-ARC domains-containing disease resistance protein] -0.208 -0.296
48 255730_at AT1G25460 [NAD(P)-binding Rossmann-fold superfamily protein] -0.208 -0.133
49 249293_at AT5G41260 BSK8, brassinosteroid-signaling kinase 8 -0.201 -0.866