4.0:Information of module
2hr transitory KNO3 SR cell
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009612 response to mechanical stimulus BP 8.912e-04
GO:0009407 toxin catabolic process BP 1.229e-03
GO:0090487 secondary metabolite catabolic process BP 1.229e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043094 cellular metabolic compound salvage BP 1.519e-13
GO:0009853 photorespiration BP 2.500e-13
GO:0007030 Golgi organization BP 1.155e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 SR cell		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 247649_at AT5G60030 unknown 0.907 0.420
2 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.850 -0.707
3 259394_at AT1G06420 unknown 0.767 -1.316
4 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 0.758 -0.519
5 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.731 0.120
6 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 0.714 -0.147
7 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.657 -1.145
8 254200_at AT4G24110 unknown 0.637 -0.184
9 255733_at AT1G25400 unknown 0.613 -0.644
10 245677_at AT1G56660 unknown 0.584 0.205
11 264879_at AT1G61260 unknown 0.574 0.209
12 261597_at AT1G49780 PUB26, plant U-box 26 0.563 -0.509
13 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.558 -1.086
14 263020_at AT1G23880 [NHL domain-containing protein] 0.553 -0.066
15 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.528 0.218
16 259015_at AT3G07350 unknown 0.516 -0.384
17 254795_at AT4G12990 unknown 0.506 0.153
18 262974_at AT1G75550 [glycine-rich protein] 0.501 0.303
19 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.500 0.849
20 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.485 -0.644
21 247543_at AT5G61600 ERF104, ethylene response factor 104 0.479 0.004
22 247789_at AT5G58680 [ARM repeat superfamily protein] 0.477 0.322
23 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.473 -0.622
24 261381_at AT1G05460 SDE3, SILENCING DEFECTIVE 0.470 -0.872
25 254364_at AT4G22020 [pseudogene] 0.452 -0.547
26 249715_at AT5G35760 [Beta-galactosidase related protein] 0.448 0.310
27 258792_at AT3G04640 [glycine-rich protein] 0.446 0.601
28 263315_at AT2G05755 [Nodulin MtN21 /EamA-like transporter family protein] 0.446 0.649
29 262420_at AT1G50300 TAF15, TBP-associated factor 15 0.438 1.030
30 254182_at AT4G23950 [Galactose-binding protein] 0.429 -0.111
31 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.428 0.752
32 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 0.427 0.130
33 261483_at AT1G14270 [CAAX amino terminal protease family protein] 0.421 0.498
34 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.418 -0.907
35 264332_at AT1G61920 unknown 0.415 0.516
36 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.407 0.218
37 254750_at AT4G13150 unknown 0.406 0.908
38 248680_at AT5G48840 ATPTS, ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, PANC, homolog of bacterial PANC, PTS, PANTOTHENATE SYNTHETASE 0.405 1.191
39 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.404 -0.232
40 258603_at AT3G02990 ATHSFA1E, heat shock transcription factor A1E, HSFA1E, heat shock transcription factor A1E 0.398 0.463
41 256824_at AT3G22121 other RNA 0.397 0.865
42 262702_at AT1G16220 [Protein phosphatase 2C family protein] 0.395 0.267
43 255920_at AT5G28590 [DNA-binding family protein] 0.386 -0.568
44 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.381 -0.242
45 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.381 0.098
46 259312_at AT3G05200 ATL6, Arabidopsis toxicos en levadura 6 0.381 0.965
47 252155_at AT3G50920 LPPepsilon1, lipid phosphate phosphatase epsilon 1 0.380 0.101
48 254005_at AT4G26330 ATSBT3.18, UNE17, UNFERTILIZED EMBRYO SAC 17 0.378 0.417
49 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.378 0.053
50 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.378 -0.200
51 262085_at AT1G56060 unknown 0.378 -0.036
52 260357_at AT1G69260 AFP1, ABI five binding protein 0.377 -0.321
53 253479_at AT4G32360 [Pyridine nucleotide-disulphide oxidoreductase family protein] 0.377 -0.017
54 265330_at AT2G18440 GUT15, GENE WITH UNSTABLE TRANSCRIPT 15 0.375 1.351
55 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 0.374 0.393
56 246285_at AT4G36980 unknown 0.374 -0.000
57 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.370 -0.570
58 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 0.369 -0.937
59 255126_at AT4G08270 unknown 0.366 -0.493
60 254877_at AT4G11640 ATSR, serine racemase, SR, serine racemase 0.365 0.625
61 248438_at AT5G51230 AtEMF2, CYR1, EMF2, EMBRYONIC FLOWER 2, VEF2, CYTOKININ RESISTANT 1 0.363 -0.030
62 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] 0.362 0.421
63 259493_at AT1G15840 unknown 0.355 -0.553
64 252470_at AT3G46930 [Protein kinase superfamily protein] 0.351 0.249
65 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.351 0.840
66 264225_at AT1G67420 [Zn-dependent exopeptidases superfamily protein] 0.350 0.066
67 258561_at AT3G05960 ATSTP6, SUGAR TRANSPORTER 6, STP6, sugar transporter 6 0.345 -0.392
68 246928_at AT5G25270 [Ubiquitin-like superfamily protein] 0.345 0.559
69 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] 0.344 -0.545
70 247319_at AT5G64050 ATERS, ERS, glutamate tRNA synthetase, OVA3, OVULE ABORTION 3 0.342 0.235
71 262284_at AT1G68670 [myb-like transcription factor family protein] 0.342 -0.185
72 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.340 0.970
73 264555_at AT1G09360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.338 0.486
74 249318_at AT5G40870 ATUK/UPRT1, uridine kinase/uracil phosphoribosyltransferase 1, UK/UPRT1, uridine kinase/uracil phosphoribosyltransferase 1, UKL1, URIDINE KINASE-LIKE 1 0.338 -0.212
75 250739_at AT5G05740 ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 0.337 0.692
76 255543_at AT4G01870 [tolB protein-related] 0.337 0.266
77 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 0.335 0.756
78 261549_at AT1G63470 AHL5, AT-hook motif nuclear localized protein 5 0.334 0.032
79 263103_at AT2G05290 unknown 0.332 -0.028
80 265403_at AT2G16690 unknown 0.332 -0.555
81 245040_at AT2G26520 unknown 0.332 -0.778
82 248214_at AT5G53670 unknown 0.331 -0.417
83 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -1.207 -0.841
84 245483_at AT4G16190 [Papain family cysteine protease] -1.091 0.100
85 248889_at AT5G46230 unknown -0.960 0.661
86 264702_at AT1G70190 [Ribosomal protein L7/L12, oligomerisation] -0.886 1.041
87 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.840 -0.444
88 250157_at AT5G15180 [Peroxidase superfamily protein] -0.794 -0.264
89 258397_at AT3G15357 unknown -0.737 0.494
90 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] -0.734 0.176
91 266074_at AT2G18740 [Small nuclear ribonucleoprotein family protein] -0.714 0.869
92 258201_at AT3G13910 unknown -0.702 0.918
93 253545_at AT4G31310 [AIG2-like (avirulence induced gene) family protein] -0.692 0.938
94 265183_at AT1G23750 [Nucleic acid-binding, OB-fold-like protein] -0.685 0.237
95 259551_at AT1G21190 LSM3A, SM-like 3A -0.681 0.403
96 254789_at AT4G12880 AtENODL19, ENODL19, early nodulin-like protein 19 -0.658 1.425
97 260387_at AT1G74100 ATSOT16, SULFOTRANSFERASE 16, ATST5A, ARABIDOPSIS SULFOTRANSFERASE 5A, CORI-7, CORONATINE INDUCED-7, SOT16, sulfotransferase 16 -0.642 0.905
98 265352_at AT2G16600 AtCYP19-1, CYP19, cyclophilin 19, ROC3, rotamase CYP 3 -0.633 0.401
99 261363_at AT1G41830 SKS6, SKU5 SIMILAR 6, SKS6, SKU5-similar 6 -0.630 0.322
100 246210_at AT4G36420 [Ribosomal protein L12 family protein] -0.624 0.299
101 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE -0.615 0.026
102 257714_at AT3G27360 H3.1, histone 3.1 -0.606 1.438
103 250845_at AT5G04600 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.605 0.384
104 245341_at AT4G16447 unknown -0.604 0.277
105 252478_at AT3G46540 [ENTH/VHS family protein] -0.581 0.489
106 253963_at AT4G26470 [Calcium-binding EF-hand family protein] -0.578 -0.042
107 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.577 -1.119
108 252238_at AT3G49960 [Peroxidase superfamily protein] -0.577 -0.008
109 261269_at AT1G26690 [emp24/gp25L/p24 family/GOLD family protein] -0.570 0.702
110 247214_at AT5G64850 unknown -0.565 -0.266
111 260367_at AT1G69760 unknown -0.563 0.844
112 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.559 -0.016
113 248379_at AT5G51700 ATRAR1, PBS2, PPHB SUSCEPTIBLE 2, RAR1, Required for Mla12 resistance 1, RPR2 -0.557 0.411
114 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.553 -0.155
115 247434_at AT5G62575 SDH7, succinate dehydrogenase 7, SDH7B, succinate dehydrogenase 7B -0.551 0.233
116 247305_at AT5G63905 unknown -0.549 -0.812
117 245310_at AT4G13950 RALFL31, ralf-like 31 -0.543 -0.172
118 261272_at AT1G26665 [Mediator complex, subunit Med10] -0.542 0.532
119 256723_at AT2G34160 [Alba DNA/RNA-binding protein] -0.542 0.990
120 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.533 0.677
121 258000_at AT3G28940 [AIG2-like (avirulence induced gene) family protein] -0.531 0.650
122 253917_at AT4G27380 unknown -0.530 0.339
123 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 -0.528 0.230
124 266705_at AT2G19750 [Ribosomal protein S30 family protein] -0.521 0.738
125 264837_at AT1G03600 PSB27 -0.521 1.352
126 264988_at AT1G27140 ATGSTU14, glutathione S-transferase tau 14, GST13, GLUTATHIONE S-TRANSFERASE 13, GSTU14, glutathione S-transferase tau 14 -0.516 0.896
127 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.514 0.827
128 264895_at AT1G23100 [GroES-like family protein] -0.512 0.450
129 246555_at AT5G15470 GAUT14, galacturonosyltransferase 14 -0.508 0.274
130 248594_at AT5G49210 unknown -0.505 0.104
131 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.496 1.476
132 261853_at AT1G50660 unknown -0.493 -0.234
133 262499_at AT1G21770 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.492 0.149
134 254161_at AT4G24370 unknown -0.487 -0.044
135 254851_at AT4G12010 [Disease resistance protein (TIR-NBS-LRR class) family] -0.487 -0.719
136 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.480 -0.562
137 249652_at AT5G37070 unknown -0.474 0.086
138 256091_at AT1G20693 HMG BETA 1, HIGH MOBILITY GROUP BETA 1, HMGB2, high mobility group B2, NFD02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2 -0.474 0.702
139 245665_at AT1G28250 unknown -0.473 0.600
140 249829_at AT5G23290 PFD5, prefoldin 5 -0.472 -0.326
141 264446_at AT1G27310 NTF2A, nuclear transport factor 2A -0.469 1.725
142 265442_at AT2G20940 unknown -0.466 0.766
143 251554_at AT3G58670 unknown -0.466 0.661
144 247375_at AT5G63135 unknown -0.465 0.298
145 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase -0.456 -0.116
146 254776_at AT4G13360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] -0.454 1.101
147 248254_at AT5G53320 [Leucine-rich repeat protein kinase family protein] -0.449 -1.303
148 267336_at AT2G19310 [HSP20-like chaperones superfamily protein] -0.449 -0.382
149 258466_at AT3G06040 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] -0.446 0.387
150 254320_at AT4G22580 [Exostosin family protein] -0.444 -0.167
151 249873_at AT5G23140 CLPP2, NCLPP7, nuclear-encoded CLP protease P7 -0.444 1.393
152 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.444 0.045
153 254910_at AT4G11175 [Nucleic acid-binding, OB-fold-like protein] -0.442 0.518
154 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.434 -0.061
155 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.433 0.719
156 246378_at AT1G57620 CYB, CYTOPLASMIC BODIES -0.432 -0.234
157 255865_at AT2G30330 BLOS1, BLOC subunit 1 -0.432 -0.135
158 264207_at AT1G22750 unknown -0.424 1.009
159 247148_at AT5G65670 IAA9, indole-3-acetic acid inducible 9 -0.424 0.761
160 249582_at AT5G37780 ACAM-1, CAM1, calmodulin 1, TCH1, TOUCH 1 -0.422 1.659
161 260841_at AT1G29195 unknown -0.420 0.405
162 255535_at AT4G01790 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.419 -0.416
163 251107_at AT5G01610 unknown -0.416 -0.126