4.0:Information of module
2hr transitory KNO3 SR cell
In comparison with whole roots 140 mM NaCl 30 minutes help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009612 response to mechanical stimulus BP 8.912e-04
GO:0009407 toxin catabolic process BP 1.229e-03
GO:0090487 secondary metabolite catabolic process BP 1.229e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043094 cellular metabolic compound salvage BP 1.519e-13
GO:0009853 photorespiration BP 2.500e-13
GO:0007030 Golgi organization BP 1.155e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 SR cell		 Log2 signal ratio
whole roots 140 mM NaCl 30 minutes
1 247649_at AT5G60030 unknown 0.907 0.072
2 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.850 0.381
3 259394_at AT1G06420 unknown 0.767 -0.075
4 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 0.758 0.037
5 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.731 0.278
6 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 0.714 0.053
7 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.657 -0.085
8 254200_at AT4G24110 unknown 0.637 0.400
9 255733_at AT1G25400 unknown 0.613 0.075
10 245677_at AT1G56660 unknown 0.584 0.575
11 264879_at AT1G61260 unknown 0.574 0.023
12 261597_at AT1G49780 PUB26, plant U-box 26 0.563 -0.019
13 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.558 0.733
14 263020_at AT1G23880 [NHL domain-containing protein] 0.553 0.076
15 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.528 0.234
16 259015_at AT3G07350 unknown 0.516 0.155
17 254795_at AT4G12990 unknown 0.506 0.092
18 262974_at AT1G75550 [glycine-rich protein] 0.501 -0.012
19 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.500 0.127
20 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.485 0.479
21 247543_at AT5G61600 ERF104, ethylene response factor 104 0.479 0.236
22 247789_at AT5G58680 [ARM repeat superfamily protein] 0.477 0.104
23 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.473 0.087
24 261381_at AT1G05460 SDE3, SILENCING DEFECTIVE 0.470 0.026
25 254364_at AT4G22020 [pseudogene] 0.452 0.016
26 249715_at AT5G35760 [Beta-galactosidase related protein] 0.448 -0.018
27 258792_at AT3G04640 [glycine-rich protein] 0.446 0.296
28 263315_at AT2G05755 [Nodulin MtN21 /EamA-like transporter family protein] 0.446 -0.104
29 262420_at AT1G50300 TAF15, TBP-associated factor 15 0.438 0.016
30 254182_at AT4G23950 [Galactose-binding protein] 0.429 -0.074
31 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.428 0.242
32 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 0.427 -0.067
33 261483_at AT1G14270 [CAAX amino terminal protease family protein] 0.421 -0.102
34 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.418 0.173
35 264332_at AT1G61920 unknown 0.415 -0.072
36 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.407 0.278
37 254750_at AT4G13150 unknown 0.406 -0.000
38 248680_at AT5G48840 ATPTS, ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, PANC, homolog of bacterial PANC, PTS, PANTOTHENATE SYNTHETASE 0.405 -0.016
39 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.404 0.303
40 258603_at AT3G02990 ATHSFA1E, heat shock transcription factor A1E, HSFA1E, heat shock transcription factor A1E 0.398 0.152
41 256824_at AT3G22121 other RNA 0.397 0.012
42 262702_at AT1G16220 [Protein phosphatase 2C family protein] 0.395 -0.050
43 255920_at AT5G28590 [DNA-binding family protein] 0.386 -0.049
44 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.381 0.122
45 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.381 0.268
46 259312_at AT3G05200 ATL6, Arabidopsis toxicos en levadura 6 0.381 0.036
47 252155_at AT3G50920 LPPepsilon1, lipid phosphate phosphatase epsilon 1 0.380 0.021
48 254005_at AT4G26330 ATSBT3.18, UNE17, UNFERTILIZED EMBRYO SAC 17 0.378 -0.057
49 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.378 0.074
50 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.378 0.027
51 262085_at AT1G56060 unknown 0.378 0.198
52 260357_at AT1G69260 AFP1, ABI five binding protein 0.377 0.330
53 253479_at AT4G32360 [Pyridine nucleotide-disulphide oxidoreductase family protein] 0.377 -0.040
54 265330_at AT2G18440 GUT15, GENE WITH UNSTABLE TRANSCRIPT 15 0.375 -0.114
55 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 0.374 0.009
56 246285_at AT4G36980 unknown 0.374 -0.034
57 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.370 -0.019
58 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 0.369 -0.026
59 255126_at AT4G08270 unknown 0.366 -0.047
60 254877_at AT4G11640 ATSR, serine racemase, SR, serine racemase 0.365 -0.048
61 248438_at AT5G51230 AtEMF2, CYR1, EMF2, EMBRYONIC FLOWER 2, VEF2, CYTOKININ RESISTANT 1 0.363 -0.063
62 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] 0.362 -0.055
63 259493_at AT1G15840 unknown 0.355 0.014
64 252470_at AT3G46930 [Protein kinase superfamily protein] 0.351 0.088
65 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.351 -0.044
66 264225_at AT1G67420 [Zn-dependent exopeptidases superfamily protein] 0.350 -0.009
67 258561_at AT3G05960 ATSTP6, SUGAR TRANSPORTER 6, STP6, sugar transporter 6 0.345 -0.028
68 246928_at AT5G25270 [Ubiquitin-like superfamily protein] 0.345 -0.009
69 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] 0.344 -0.082
70 247319_at AT5G64050 ATERS, ERS, glutamate tRNA synthetase, OVA3, OVULE ABORTION 3 0.342 0.005
71 262284_at AT1G68670 [myb-like transcription factor family protein] 0.342 0.006
72 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.340 -0.092
73 264555_at AT1G09360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.338 -0.052
74 249318_at AT5G40870 ATUK/UPRT1, uridine kinase/uracil phosphoribosyltransferase 1, UK/UPRT1, uridine kinase/uracil phosphoribosyltransferase 1, UKL1, URIDINE KINASE-LIKE 1 0.338 -0.040
75 250739_at AT5G05740 ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 0.337 -0.077
76 255543_at AT4G01870 [tolB protein-related] 0.337 0.009
77 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 0.335 -0.043
78 261549_at AT1G63470 AHL5, AT-hook motif nuclear localized protein 5 0.334 -0.020
79 263103_at AT2G05290 unknown 0.332 -0.012
80 265403_at AT2G16690 unknown 0.332 0.010
81 245040_at AT2G26520 unknown 0.332 -0.027
82 248214_at AT5G53670 unknown 0.331 0.011
83 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -1.207 0.077
84 245483_at AT4G16190 [Papain family cysteine protease] -1.091 0.035
85 248889_at AT5G46230 unknown -0.960 -0.015
86 264702_at AT1G70190 [Ribosomal protein L7/L12, oligomerisation] -0.886 0.057
87 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.840 0.075
88 250157_at AT5G15180 [Peroxidase superfamily protein] -0.794 -0.019
89 258397_at AT3G15357 unknown -0.737 0.050
90 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] -0.734 0.169
91 266074_at AT2G18740 [Small nuclear ribonucleoprotein family protein] -0.714 0.024
92 258201_at AT3G13910 unknown -0.702 0.067
93 253545_at AT4G31310 [AIG2-like (avirulence induced gene) family protein] -0.692 0.104
94 265183_at AT1G23750 [Nucleic acid-binding, OB-fold-like protein] -0.685 -0.029
95 259551_at AT1G21190 LSM3A, SM-like 3A -0.681 0.125
96 254789_at AT4G12880 AtENODL19, ENODL19, early nodulin-like protein 19 -0.658 -0.014
97 260387_at AT1G74100 ATSOT16, SULFOTRANSFERASE 16, ATST5A, ARABIDOPSIS SULFOTRANSFERASE 5A, CORI-7, CORONATINE INDUCED-7, SOT16, sulfotransferase 16 -0.642 0.031
98 265352_at AT2G16600 AtCYP19-1, CYP19, cyclophilin 19, ROC3, rotamase CYP 3 -0.633 0.048
99 261363_at AT1G41830 SKS6, SKU5 SIMILAR 6, SKS6, SKU5-similar 6 -0.630 -0.053
100 246210_at AT4G36420 [Ribosomal protein L12 family protein] -0.624 0.021
101 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE -0.615 0.012
102 257714_at AT3G27360 H3.1, histone 3.1 -0.606 -0.103
103 250845_at AT5G04600 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.605 0.076
104 245341_at AT4G16447 unknown -0.604 0.158
105 252478_at AT3G46540 [ENTH/VHS family protein] -0.581 0.026
106 253963_at AT4G26470 [Calcium-binding EF-hand family protein] -0.578 0.086
107 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.577 -0.008
108 252238_at AT3G49960 [Peroxidase superfamily protein] -0.577 -0.075
109 261269_at AT1G26690 [emp24/gp25L/p24 family/GOLD family protein] -0.570 0.028
110 247214_at AT5G64850 unknown -0.565 0.249
111 260367_at AT1G69760 unknown -0.563 0.068
112 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.559 0.052
113 248379_at AT5G51700 ATRAR1, PBS2, PPHB SUSCEPTIBLE 2, RAR1, Required for Mla12 resistance 1, RPR2 -0.557 0.088
114 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.553 -0.081
115 247434_at AT5G62575 SDH7, succinate dehydrogenase 7, SDH7B, succinate dehydrogenase 7B -0.551 0.039
116 247305_at AT5G63905 unknown -0.549 0.217
117 245310_at AT4G13950 RALFL31, ralf-like 31 -0.543 0.040
118 261272_at AT1G26665 [Mediator complex, subunit Med10] -0.542 0.086
119 256723_at AT2G34160 [Alba DNA/RNA-binding protein] -0.542 0.039
120 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.533 -0.068
121 258000_at AT3G28940 [AIG2-like (avirulence induced gene) family protein] -0.531 0.081
122 253917_at AT4G27380 unknown -0.530 -0.017
123 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 -0.528 -0.084
124 266705_at AT2G19750 [Ribosomal protein S30 family protein] -0.521 -0.001
125 264837_at AT1G03600 PSB27 -0.521 0.024
126 264988_at AT1G27140 ATGSTU14, glutathione S-transferase tau 14, GST13, GLUTATHIONE S-TRANSFERASE 13, GSTU14, glutathione S-transferase tau 14 -0.516 -0.093
127 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.514 0.445
128 264895_at AT1G23100 [GroES-like family protein] -0.512 0.047
129 246555_at AT5G15470 GAUT14, galacturonosyltransferase 14 -0.508 -0.205
130 248594_at AT5G49210 unknown -0.505 0.095
131 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.496 0.014
132 261853_at AT1G50660 unknown -0.493 -0.054
133 262499_at AT1G21770 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.492 0.088
134 254161_at AT4G24370 unknown -0.487 0.183
135 254851_at AT4G12010 [Disease resistance protein (TIR-NBS-LRR class) family] -0.487 0.057
136 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.480 0.013
137 249652_at AT5G37070 unknown -0.474 0.035
138 256091_at AT1G20693 HMG BETA 1, HIGH MOBILITY GROUP BETA 1, HMGB2, high mobility group B2, NFD02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2 -0.474 0.029
139 245665_at AT1G28250 unknown -0.473 0.055
140 249829_at AT5G23290 PFD5, prefoldin 5 -0.472 0.002
141 264446_at AT1G27310 NTF2A, nuclear transport factor 2A -0.469 0.075
142 265442_at AT2G20940 unknown -0.466 0.064
143 251554_at AT3G58670 unknown -0.466 0.017
144 247375_at AT5G63135 unknown -0.465 0.091
145 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase -0.456 0.029
146 254776_at AT4G13360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] -0.454 0.029
147 248254_at AT5G53320 [Leucine-rich repeat protein kinase family protein] -0.449 -0.024
148 267336_at AT2G19310 [HSP20-like chaperones superfamily protein] -0.449 0.217
149 258466_at AT3G06040 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] -0.446 -0.026
150 254320_at AT4G22580 [Exostosin family protein] -0.444 -0.026
151 249873_at AT5G23140 CLPP2, NCLPP7, nuclear-encoded CLP protease P7 -0.444 -0.020
152 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.444 0.096
153 254910_at AT4G11175 [Nucleic acid-binding, OB-fold-like protein] -0.442 0.078
154 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.434 -0.054
155 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.433 0.201
156 246378_at AT1G57620 CYB, CYTOPLASMIC BODIES -0.432 0.007
157 255865_at AT2G30330 BLOS1, BLOC subunit 1 -0.432 0.043
158 264207_at AT1G22750 unknown -0.424 -0.019
159 247148_at AT5G65670 IAA9, indole-3-acetic acid inducible 9 -0.424 -0.002
160 249582_at AT5G37780 ACAM-1, CAM1, calmodulin 1, TCH1, TOUCH 1 -0.422 0.046
161 260841_at AT1G29195 unknown -0.420 0.172
162 255535_at AT4G01790 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.419 0.062
163 251107_at AT5G01610 unknown -0.416 0.002