4.0:Information of module
2hr transitory KNO3 SR cell
In comparison with Leafminer damaged seedlings help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0009612 response to mechanical stimulus BP 8.912e-04
GO:0009407 toxin catabolic process BP 1.229e-03
GO:0090487 secondary metabolite catabolic process BP 1.229e-03
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043094 cellular metabolic compound salvage BP 1.519e-13
GO:0009853 photorespiration BP 2.500e-13
GO:0007030 Golgi organization BP 1.155e-11
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 SR cell		 Log2 signal ratio
Leafminer damaged seedlings
1 247649_at AT5G60030 unknown 0.907 0.025
2 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.850 0.405
3 259394_at AT1G06420 unknown 0.767 -0.068
4 255937_at AT1G12610 DDF1, DWARF AND DELAYED FLOWERING 1 0.758 0.601
5 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.731 1.058
6 259364_at AT1G13260 EDF4, ETHYLENE RESPONSE DNA BINDING FACTOR 4, RAV1, related to ABI3/VP1 1 0.714 0.155
7 245258_at AT4G15340 04C11, ATPEN1, pentacyclic triterpene synthase 1, PEN1, pentacyclic triterpene synthase 1 0.657 0.037
8 254200_at AT4G24110 unknown 0.637 0.395
9 255733_at AT1G25400 unknown 0.613 0.475
10 245677_at AT1G56660 unknown 0.584 0.182
11 264879_at AT1G61260 unknown 0.574 0.047
12 261597_at AT1G49780 PUB26, plant U-box 26 0.563 -0.207
13 254066_at AT4G25480 ATCBF3, CBF3, C-REPEAT BINDING FACTOR 3, DREB1A, dehydration response element B1A 0.558 0.837
14 263020_at AT1G23880 [NHL domain-containing protein] 0.553 -0.182
15 258507_at AT3G06500 A/N-InvC, alkaline/neutral invertase C 0.528 0.829
16 259015_at AT3G07350 unknown 0.516 0.249
17 254795_at AT4G12990 unknown 0.506 -0.041
18 262974_at AT1G75550 [glycine-rich protein] 0.501 -0.025
19 266832_at AT2G30040 MAPKKK14, mitogen-activated protein kinase kinase kinase 14 0.500 0.511
20 252368_at AT3G48520 CYP94B3, cytochrome P450, family 94, subfamily B, polypeptide 3 0.485 1.091
21 247543_at AT5G61600 ERF104, ethylene response factor 104 0.479 0.187
22 247789_at AT5G58680 [ARM repeat superfamily protein] 0.477 0.327
23 256697_at AT3G20660 AtOCT4, organic cation/carnitine transporter4, OCT4, organic cation/carnitine transporter4 0.473 0.161
24 261381_at AT1G05460 SDE3, SILENCING DEFECTIVE 0.470 -0.156
25 254364_at AT4G22020 [pseudogene] 0.452 0.021
26 249715_at AT5G35760 [Beta-galactosidase related protein] 0.448 -0.020
27 258792_at AT3G04640 [glycine-rich protein] 0.446 0.826
28 263315_at AT2G05755 [Nodulin MtN21 /EamA-like transporter family protein] 0.446 -0.037
29 262420_at AT1G50300 TAF15, TBP-associated factor 15 0.438 -0.030
30 254182_at AT4G23950 [Galactose-binding protein] 0.429 -0.155
31 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.428 -0.305
32 255742_at AT1G25560 AtTEM1, EDF1, ETHYLENE RESPONSE DNA BINDING FACTOR 1, TEM1, TEMPRANILLO 1 0.427 0.177
33 261483_at AT1G14270 [CAAX amino terminal protease family protein] 0.421 -0.137
34 248794_at AT5G47220 ATERF-2, ETHYLENE RESPONSE FACTOR- 2, ATERF2, ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 2, ERF2, ethylene responsive element binding factor 2 0.418 0.598
35 264332_at AT1G61920 unknown 0.415 0.050
36 260915_at AT1G02660 [alpha/beta-Hydrolases superfamily protein] 0.407 0.607
37 254750_at AT4G13150 unknown 0.406 0.055
38 248680_at AT5G48840 ATPTS, ARABIDOPSIS THALIANA PANTOTHENATE SYNTHETASE, PANC, homolog of bacterial PANC, PTS, PANTOTHENATE SYNTHETASE 0.405 -0.063
39 251259_at AT3G62260 [Protein phosphatase 2C family protein] 0.404 0.159
40 258603_at AT3G02990 ATHSFA1E, heat shock transcription factor A1E, HSFA1E, heat shock transcription factor A1E 0.398 0.122
41 256824_at AT3G22121 other RNA 0.397 0.022
42 262702_at AT1G16220 [Protein phosphatase 2C family protein] 0.395 -0.064
43 255920_at AT5G28590 [DNA-binding family protein] 0.386 -0.002
44 245699_at AT5G04250 [Cysteine proteinases superfamily protein] 0.381 0.635
45 261564_at AT1G01720 ANAC002, Arabidopsis NAC domain containing protein 2, ATAF1 0.381 0.401
46 259312_at AT3G05200 ATL6, Arabidopsis toxicos en levadura 6 0.381 0.338
47 252155_at AT3G50920 LPPepsilon1, lipid phosphate phosphatase epsilon 1 0.380 0.004
48 254005_at AT4G26330 ATSBT3.18, UNE17, UNFERTILIZED EMBRYO SAC 17 0.378 -0.032
49 253915_at AT4G27280 [Calcium-binding EF-hand family protein] 0.378 0.115
50 257245_at AT3G24110 [Calcium-binding EF-hand family protein] 0.378 -0.035
51 262085_at AT1G56060 unknown 0.378 0.414
52 260357_at AT1G69260 AFP1, ABI five binding protein 0.377 0.581
53 253479_at AT4G32360 [Pyridine nucleotide-disulphide oxidoreductase family protein] 0.377 -0.099
54 265330_at AT2G18440 GUT15, GENE WITH UNSTABLE TRANSCRIPT 15 0.375 0.084
55 260058_at AT1G78100 AUF1, auxin up-regulated f-box protein 1 0.374 -0.224
56 246285_at AT4G36980 unknown 0.374 -0.037
57 246085_at AT5G20540 ATBRXL4, BREVIS RADIX-like 4, BRX-LIKE4, BRXL4, BREVIS RADIX-like 4 0.370 -0.334
58 249070_at AT5G44030 CESA4, cellulose synthase A4, IRX5, IRREGULAR XYLEM 5, NWS2 0.369 -0.185
59 255126_at AT4G08270 unknown 0.366 -0.024
60 254877_at AT4G11640 ATSR, serine racemase, SR, serine racemase 0.365 -0.149
61 248438_at AT5G51230 AtEMF2, CYR1, EMF2, EMBRYONIC FLOWER 2, VEF2, CYTOKININ RESISTANT 1 0.363 -0.082
62 261032_at AT1G17430 [alpha/beta-Hydrolases superfamily protein] 0.362 0.006
63 259493_at AT1G15840 unknown 0.355 0.020
64 252470_at AT3G46930 [Protein kinase superfamily protein] 0.351 0.496
65 248596_at AT5G49330 ATMYB111, ARABIDOPSIS MYB DOMAIN PROTEIN 111, MYB111, myb domain protein 111, PFG3, PRODUCTION OF FLAVONOL GLYCOSIDES 3 0.351 -0.297
66 264225_at AT1G67420 [Zn-dependent exopeptidases superfamily protein] 0.350 0.083
67 258561_at AT3G05960 ATSTP6, SUGAR TRANSPORTER 6, STP6, sugar transporter 6 0.345 -0.065
68 246928_at AT5G25270 [Ubiquitin-like superfamily protein] 0.345 -0.017
69 251347_at AT3G61010 [Ferritin/ribonucleotide reductase-like family protein] 0.344 -0.017
70 247319_at AT5G64050 ATERS, ERS, glutamate tRNA synthetase, OVA3, OVULE ABORTION 3 0.342 -0.064
71 262284_at AT1G68670 [myb-like transcription factor family protein] 0.342 0.048
72 255506_at AT4G02130 GATL6, galacturonosyltransferase-like 6, LGT10 0.340 -0.239
73 264555_at AT1G09360 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.338 0.004
74 249318_at AT5G40870 ATUK/UPRT1, uridine kinase/uracil phosphoribosyltransferase 1, UK/UPRT1, uridine kinase/uracil phosphoribosyltransferase 1, UKL1, URIDINE KINASE-LIKE 1 0.338 0.012
75 250739_at AT5G05740 ATEGY2, EGY2, ethylene-dependent gravitropism-deficient and yellow-green-like 2 0.337 -0.202
76 255543_at AT4G01870 [tolB protein-related] 0.337 0.482
77 252184_at AT3G50660 AtDWF4, CLM, CLOMAZONE-RESISTANT, CYP90B1, CYTOCHROME P450 90B1, DWF4, DWARF 4, PSC1, PARTIALLY SUPPRESSING COI1 INSENSITIVITY TO JA 1, SAV1, SHADE AVOIDANCE 1, SNP2, SUPPRESSOR OF NPH4 2 0.335 -0.035
78 261549_at AT1G63470 AHL5, AT-hook motif nuclear localized protein 5 0.334 -0.355
79 263103_at AT2G05290 unknown 0.332 0.002
80 265403_at AT2G16690 unknown 0.332 -0.090
81 245040_at AT2G26520 unknown 0.332 -0.018
82 248214_at AT5G53670 unknown 0.331 -0.052
83 264960_at AT1G76930 ATEXT1, EXTENSIN 1, ATEXT4, extensin 4, EXT1, extensin 1, EXT4, extensin 4, ORG5, OBP3-RESPONSIVE GENE 5 -1.207 0.971
84 245483_at AT4G16190 [Papain family cysteine protease] -1.091 0.098
85 248889_at AT5G46230 unknown -0.960 0.147
86 264702_at AT1G70190 [Ribosomal protein L7/L12, oligomerisation] -0.886 0.103
87 258080_at AT3G25930 [Adenine nucleotide alpha hydrolases-like superfamily protein] -0.840 0.005
88 250157_at AT5G15180 [Peroxidase superfamily protein] -0.794 0.034
89 258397_at AT3G15357 unknown -0.737 0.137
90 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] -0.734 0.236
91 266074_at AT2G18740 [Small nuclear ribonucleoprotein family protein] -0.714 -0.030
92 258201_at AT3G13910 unknown -0.702 0.471
93 253545_at AT4G31310 [AIG2-like (avirulence induced gene) family protein] -0.692 -0.227
94 265183_at AT1G23750 [Nucleic acid-binding, OB-fold-like protein] -0.685 -0.033
95 259551_at AT1G21190 LSM3A, SM-like 3A -0.681 0.065
96 254789_at AT4G12880 AtENODL19, ENODL19, early nodulin-like protein 19 -0.658 -0.123
97 260387_at AT1G74100 ATSOT16, SULFOTRANSFERASE 16, ATST5A, ARABIDOPSIS SULFOTRANSFERASE 5A, CORI-7, CORONATINE INDUCED-7, SOT16, sulfotransferase 16 -0.642 0.231
98 265352_at AT2G16600 AtCYP19-1, CYP19, cyclophilin 19, ROC3, rotamase CYP 3 -0.633 0.176
99 261363_at AT1G41830 SKS6, SKU5 SIMILAR 6, SKS6, SKU5-similar 6 -0.630 -0.324
100 246210_at AT4G36420 [Ribosomal protein L12 family protein] -0.624 -0.033
101 259553_x_at AT1G21310 ATEXT3, extensin 3, EXT3, extensin 3, RSH, ROOT-SHOOT-HYPOCOTYL DEFECTIVE -0.615 0.382
102 257714_at AT3G27360 H3.1, histone 3.1 -0.606 0.043
103 250845_at AT5G04600 [RNA-binding (RRM/RBD/RNP motifs) family protein] -0.605 0.030
104 245341_at AT4G16447 unknown -0.604 -0.223
105 252478_at AT3G46540 [ENTH/VHS family protein] -0.581 -0.032
106 253963_at AT4G26470 [Calcium-binding EF-hand family protein] -0.578 0.004
107 257535_at AT3G09490 [Tetratricopeptide repeat (TPR)-like superfamily protein] -0.577 0.477
108 252238_at AT3G49960 [Peroxidase superfamily protein] -0.577 -0.057
109 261269_at AT1G26690 [emp24/gp25L/p24 family/GOLD family protein] -0.570 0.242
110 247214_at AT5G64850 unknown -0.565 -0.044
111 260367_at AT1G69760 unknown -0.563 0.032
112 250002_at AT5G18690 AGP25, arabinogalactan protein 25, ATAGP25, ARABIDOPSIS THALIANA ARABINOGALACTAN PROTEINS 25 -0.559 -0.409
113 248379_at AT5G51700 ATRAR1, PBS2, PPHB SUSCEPTIBLE 2, RAR1, Required for Mla12 resistance 1, RPR2 -0.557 0.084
114 260758_at AT1G48930 AtGH9C1, glycosyl hydrolase 9C1, GH9C1, glycosyl hydrolase 9C1 -0.553 0.020
115 247434_at AT5G62575 SDH7, succinate dehydrogenase 7, SDH7B, succinate dehydrogenase 7B -0.551 -0.012
116 247305_at AT5G63905 unknown -0.549 0.227
117 245310_at AT4G13950 RALFL31, ralf-like 31 -0.543 0.150
118 261272_at AT1G26665 [Mediator complex, subunit Med10] -0.542 0.080
119 256723_at AT2G34160 [Alba DNA/RNA-binding protein] -0.542 0.025
120 246534_at AT5G15890 TBL21, TRICHOME BIREFRINGENCE-LIKE 21 -0.533 -0.015
121 258000_at AT3G28940 [AIG2-like (avirulence induced gene) family protein] -0.531 0.175
122 253917_at AT4G27380 unknown -0.530 0.112
123 262254_at AT1G53920 GLIP5, GDSL-motif lipase 5 -0.528 0.174
124 266705_at AT2G19750 [Ribosomal protein S30 family protein] -0.521 -0.027
125 264837_at AT1G03600 PSB27 -0.521 -0.076
126 264988_at AT1G27140 ATGSTU14, glutathione S-transferase tau 14, GST13, GLUTATHIONE S-TRANSFERASE 13, GSTU14, glutathione S-transferase tau 14 -0.516 0.088
127 258133_at AT3G24500 ATMBF1C, MBF1C, multiprotein bridging factor 1C -0.514 -0.261
128 264895_at AT1G23100 [GroES-like family protein] -0.512 0.090
129 246555_at AT5G15470 GAUT14, galacturonosyltransferase 14 -0.508 0.003
130 248594_at AT5G49210 unknown -0.505 0.007
131 246746_at AT5G27820 [Ribosomal L18p/L5e family protein] -0.496 -0.031
132 261853_at AT1G50660 unknown -0.493 -0.162
133 262499_at AT1G21770 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] -0.492 0.019
134 254161_at AT4G24370 unknown -0.487 0.152
135 254851_at AT4G12010 [Disease resistance protein (TIR-NBS-LRR class) family] -0.487 0.043
136 253193_at AT4G35380 [SEC7-like guanine nucleotide exchange family protein] -0.480 0.018
137 249652_at AT5G37070 unknown -0.474 0.155
138 256091_at AT1G20693 HMG BETA 1, HIGH MOBILITY GROUP BETA 1, HMGB2, high mobility group B2, NFD02, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 02, NFD2, NUCLEOSOME/CHROMATIN ASSEMBLY FACTOR GROUP D 2 -0.474 0.279
139 245665_at AT1G28250 unknown -0.473 0.178
140 249829_at AT5G23290 PFD5, prefoldin 5 -0.472 0.011
141 264446_at AT1G27310 NTF2A, nuclear transport factor 2A -0.469 0.026
142 265442_at AT2G20940 unknown -0.466 -0.064
143 251554_at AT3G58670 unknown -0.466 0.060
144 247375_at AT5G63135 unknown -0.465 0.124
145 253122_at AT4G35987 CaM KMT, calmodulin N-methyltransferase -0.456 0.048
146 254776_at AT4G13360 [ATP-dependent caseinolytic (Clp) protease/crotonase family protein] -0.454 0.032
147 248254_at AT5G53320 [Leucine-rich repeat protein kinase family protein] -0.449 0.091
148 267336_at AT2G19310 [HSP20-like chaperones superfamily protein] -0.449 -0.313
149 258466_at AT3G06040 [Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein] -0.446 -0.034
150 254320_at AT4G22580 [Exostosin family protein] -0.444 -0.064
151 249873_at AT5G23140 CLPP2, NCLPP7, nuclear-encoded CLP protease P7 -0.444 0.005
152 250420_at AT5G11260 HY5, ELONGATED HYPOCOTYL 5, TED 5, REVERSAL OF THE DET PHENOTYPE 5 -0.444 -0.425
153 254910_at AT4G11175 [Nucleic acid-binding, OB-fold-like protein] -0.442 -0.213
154 263942_at AT2G35860 FLA16, FASCICLIN-like arabinogalactan protein 16 precursor -0.434 -0.360
155 261420_at AT1G07720 KCS3, 3-ketoacyl-CoA synthase 3 -0.433 0.174
156 246378_at AT1G57620 CYB, CYTOPLASMIC BODIES -0.432 0.127
157 255865_at AT2G30330 BLOS1, BLOC subunit 1 -0.432 0.042
158 264207_at AT1G22750 unknown -0.424 0.013
159 247148_at AT5G65670 IAA9, indole-3-acetic acid inducible 9 -0.424 -0.031
160 249582_at AT5G37780 ACAM-1, CAM1, calmodulin 1, TCH1, TOUCH 1 -0.422 0.372
161 260841_at AT1G29195 unknown -0.420 0.081
162 255535_at AT4G01790 [Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein] -0.419 0.090
163 251107_at AT5G01610 unknown -0.416 0.096