4.0:Information of module
2hr continuous KNO3 PrR cell
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 3.867e-04
GO:0010033 response to organic substance BP 4.590e-04
GO:0009750 response to fructose BP 5.070e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009311 oligosaccharide metabolic process BP 3.603e-03
GO:0009312 oligosaccharide biosynthetic process BP 4.362e-03
GO:0009688 abscisic acid biosynthetic process BP 5.379e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 PrR cell		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.773 -0.707
2 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.726 0.054
3 257645_at AT3G25790 [myb-like transcription factor family protein] 0.717 -0.136
4 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.659 0.373
5 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.615 0.120
6 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.504 -0.546
7 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.463 -0.781
8 265618_at AT2G25460 unknown 0.456 -0.428
9 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.438 -0.679
10 266313_at AT2G26980 CIPK3, CBL-interacting protein kinase 3, SnRK3.17, SNF1-RELATED PROTEIN KINASE 3.17 0.432 0.103
11 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.421 0.752
12 259015_at AT3G07350 unknown 0.414 -0.384
13 247443_at AT5G62720 [Integral membrane HPP family protein] 0.404 -0.113
14 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.401 -0.705
15 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.392 0.178
16 261842_at AT1G16160 WAKL5, wall associated kinase-like 5 0.371 -0.675
17 264202_at AT1G22810 [Integrase-type DNA-binding superfamily protein] 0.371 -1.213
18 245779_at AT1G73510 unknown 0.367 -0.507
19 246054_at AT5G08360 unknown 0.358 -0.371
20 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.355 1.049
21 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.342 0.290
22 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] 0.341 0.259
23 252859_at AT4G39780 [Integrase-type DNA-binding superfamily protein] 0.338 0.057
24 245264_at AT4G17245 [RING/U-box superfamily protein] 0.332 0.021
25 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.331 0.442
26 246279_at AT4G36740 ATHB40, homeobox protein 40, HB-5, HB40, homeobox protein 40 0.331 -1.094
27 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 0.318 1.053
28 265184_at AT1G23710 unknown 0.313 -0.459
29 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.307 0.887
30 250073_at AT5G17170 ENH1, enhancer of sos3-1 0.305 0.361
31 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 0.300 0.334
32 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.296 0.244
33 247492_at AT5G61890 [Integrase-type DNA-binding superfamily protein] 0.294 -0.624
34 247543_at AT5G61600 ERF104, ethylene response factor 104 0.287 0.004
35 262284_at AT1G68670 [myb-like transcription factor family protein] 0.278 -0.185
36 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.273 1.239
37 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT 0.272 0.359
38 251720_at AT3G56160 [Sodium Bile acid symporter family] 0.270 0.481
39 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.259 0.608
40 260522_x_at AT2G41730 unknown 0.257 -0.810
41 255734_at AT1G25550 [myb-like transcription factor family protein] 0.257 -0.361
42 251039_at AT5G02020 SIS, Salt Induced Serine rich 0.256 -0.426
43 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.478 0.046
44 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.425 -0.419
45 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -0.370 1.210
46 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.370 0.589
47 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.340 0.131
48 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.291 -0.367
49 250104_at AT5G16610 unknown -0.279 -0.147
50 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.275 -0.272
51 245310_at AT4G13950 RALFL31, ralf-like 31 -0.264 -0.172
52 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 -0.259 -0.561
53 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.256 0.033
54 253112_at AT4G35970 APX5, ascorbate peroxidase 5 -0.236 -0.702
55 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.231 0.034
56 254442_at AT4G21060 AtGALT2, GALT2, AGP galactosyltransferase 2 -0.229 -0.368
57 259207_at AT3G09050 unknown -0.226 -0.158
58 245990_at AT5G20640 unknown -0.226 -0.736
59 265253_at AT2G02020 AtNPF8.4, AtPTR4, NPF8.4, NRT1/ PTR family 8.4, PTR4, peptide transporter 4 -0.221 0.168
60 252621_at AT3G45270 [hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-58 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)] -0.215 -0.403
61 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.213 0.006
62 252199_at AT3G50270 [HXXXD-type acyl-transferase family protein] -0.210 -0.338
63 251716_at AT3G55870 [ADC synthase superfamily protein] -0.207 -1.023
64 261841_at AT1G15920 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.207 0.552
65 257805_at AT3G18830 ATPLT5, POLYOL TRANSPORTER 5, ATPMT5, ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, PMT5, polyol/monosaccharide transporter 5 -0.206 1.172
66 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.204 0.088
67 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.200 0.601
68 261085_at AT1G17480 IQD7, IQ-domain 7 -0.198 -0.436
69 265433_at AT2G20950 [Arabidopsis phospholipase-like protein (PEARLI 4) family] -0.198 -0.517
70 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.197 -0.297
71 248055_at AT5G55830 LecRK-S.7, L-type lectin receptor kinase S.7 -0.194 -1.020
72 263232_at AT1G05700 [Leucine-rich repeat transmembrane protein kinase protein] -0.192 -0.489
73 251820_at AT3G55040 GSTL2, glutathione transferase lambda 2 -0.192 0.176
74 252901_at AT4G39550 [Galactose oxidase/kelch repeat superfamily protein] -0.190 -0.702
75 258470_at AT3G06035 [Glycoprotein membrane precursor GPI-anchored] -0.188 -0.124
76 266068_at AT2G18640 GGPS4, geranylgeranyl pyrophosphate synthase 4 -0.186 -0.375
77 263719_at AT2G13600 SLO2, SLOW GROWTH 2 -0.186 -0.311
78 251380_at AT3G60700 unknown -0.186 -0.879
79 254974_at AT4G10490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.184 -0.544
80 251805_at AT3G55530 AtSDIR1, SDIR1, SALT- AND DROUGHT-INDUCED RING FINGER1 -0.183 0.894
81 253500_at AT4G31920 ARR10, response regulator 10, RR10, response regulator 10 -0.177 -0.453
82 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.176 -0.595
83 247020_at AT5G67020 unknown -0.175 0.254