4.0:Information of module
2hr continuous KNO3 PrR cell
In comparison with xyl-grown cell culture- 1h 1mM Suc help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:1901700 response to oxygen-containing compound BP 3.867e-04
GO:0010033 response to organic substance BP 4.590e-04
GO:0009750 response to fructose BP 5.070e-04
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0009311 oligosaccharide metabolic process BP 3.603e-03
GO:0009312 oligosaccharide biosynthetic process BP 4.362e-03
GO:0009688 abscisic acid biosynthetic process BP 5.379e-03
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr continuous KNO3 PrR cell		 Log2 signal ratio
xyl-grown cell culture- 1h 1mM Suc
1 252367_at AT3G48360 ATBT2, BT2, BTB and TAZ domain protein 2 0.773 -0.251
2 264014_at AT2G21210 SAUR6, SMALL AUXIN UPREGULATED RNA 6 0.726 -0.068
3 257645_at AT3G25790 [myb-like transcription factor family protein] 0.717 -0.002
4 265766_at AT2G48080 [oxidoreductase, 2OG-Fe(II) oxygenase family protein] 0.659 -0.019
5 266821_at AT2G44840 ATERF13, ETHYLENE-RESPONSIVE ELEMENT BINDING FACTOR 13, EREBP, ERF13, ethylene-responsive element binding factor 13 0.615 0.055
6 253043_at AT4G37540 LBD39, LOB domain-containing protein 39 0.504 -0.048
7 259365_at AT1G13300 HRS1, HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1 0.463 -0.089
8 265618_at AT2G25460 unknown 0.456 -0.009
9 254027_at AT4G25835 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.438 0.073
10 266313_at AT2G26980 CIPK3, CBL-interacting protein kinase 3, SnRK3.17, SNF1-RELATED PROTEIN KINASE 3.17 0.432 0.029
11 246854_at AT5G26200 [Mitochondrial substrate carrier family protein] 0.421 -0.025
12 259015_at AT3G07350 unknown 0.414 -0.117
13 247443_at AT5G62720 [Integral membrane HPP family protein] 0.404 0.036
14 248400_at AT5G52020 [Integrase-type DNA-binding superfamily protein] 0.401 0.053
15 247026_at AT5G67080 MAPKKK19, mitogen-activated protein kinase kinase kinase 19 0.392 0.154
16 261842_at AT1G16160 WAKL5, wall associated kinase-like 5 0.371 -0.008
17 264202_at AT1G22810 [Integrase-type DNA-binding superfamily protein] 0.371 -0.001
18 245779_at AT1G73510 unknown 0.367 -0.004
19 246054_at AT5G08360 unknown 0.358 0.055
20 252991_at AT4G38470 STY46, serine/threonine/tyrosine kinase 46 0.355 -0.061
21 260284_at AT1G80380 [P-loop containing nucleoside triphosphate hydrolases superfamily protein] 0.342 -0.036
22 267263_at AT2G23110 [Late embryogenesis abundant protein, group 6] 0.341 0.034
23 252859_at AT4G39780 [Integrase-type DNA-binding superfamily protein] 0.338 -0.005
24 245264_at AT4G17245 [RING/U-box superfamily protein] 0.332 0.034
25 252908_at AT4G39670 [Glycolipid transfer protein (GLTP) family protein] 0.331 0.034
26 246279_at AT4G36740 ATHB40, homeobox protein 40, HB-5, HB40, homeobox protein 40 0.331 -0.067
27 253049_at AT4G37300 MEE59, maternal effect embryo arrest 59 0.318 0.012
28 265184_at AT1G23710 unknown 0.313 -0.069
29 264859_at AT1G24280 G6PD3, glucose-6-phosphate dehydrogenase 3 0.307 0.051
30 250073_at AT5G17170 ENH1, enhancer of sos3-1 0.305 -0.001
31 263019_at AT1G23870 ATTPS9, trehalose-phosphatase/synthase 9, TPS9, TREHALOSE -6-PHOSPHATASE SYNTHASE S9, TPS9, trehalose-phosphatase/synthase 9 0.300 -0.217
32 257840_at AT3G25250 AGC2, AGC2-1, AGC2 kinase 1, AtOXI1, OXI1, oxidative signal-inducible1 0.296 0.050
33 247492_at AT5G61890 [Integrase-type DNA-binding superfamily protein] 0.294 0.054
34 247543_at AT5G61600 ERF104, ethylene response factor 104 0.287 -0.132
35 262284_at AT1G68670 [myb-like transcription factor family protein] 0.278 0.025
36 255230_at AT4G05390 ATRFNR1, root FNR 1, RFNR1, root FNR 1 0.273 -0.001
37 245593_at AT4G14550 IAA14, indole-3-acetic acid inducible 14, SLR, SOLITARY ROOT 0.272 -0.003
38 251720_at AT3G56160 [Sodium Bile acid symporter family] 0.270 0.030
39 249325_at AT5G40850 UPM1, urophorphyrin methylase 1 0.259 0.019
40 260522_x_at AT2G41730 unknown 0.257 0.033
41 255734_at AT1G25550 [myb-like transcription factor family protein] 0.257 0.055
42 251039_at AT5G02020 SIS, Salt Induced Serine rich 0.256 -0.010
43 248118_at AT5G55050 [GDSL-like Lipase/Acylhydrolase superfamily protein] -0.478 -0.004
44 250100_at AT5G16570 GLN1;4, glutamine synthetase 1;4 -0.425 0.027
45 249812_at AT5G23830 [MD-2-related lipid recognition domain-containing protein] -0.370 -0.016
46 254723_at AT4G13510 AMT1;1, ammonium transporter 1;1, ATAMT1, ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ATAMT1;1 -0.370 -0.017
47 259737_at AT1G64400 LACS3, long-chain acyl-CoA synthetase 3 -0.340 -0.020
48 252202_at AT3G50300 [HXXXD-type acyl-transferase family protein] -0.291 0.119
49 250104_at AT5G16610 unknown -0.279 -0.015
50 265846_at AT2G35770 scpl28, serine carboxypeptidase-like 28 -0.275 -0.017
51 245310_at AT4G13950 RALFL31, ralf-like 31 -0.264 0.050
52 267148_at AT2G23470 RUS4, ROOT UV-B SENSITIVE 4 -0.259 0.025
53 253382_at AT4G33040 [Thioredoxin superfamily protein] -0.256 0.050
54 253112_at AT4G35970 APX5, ascorbate peroxidase 5 -0.236 -0.024
55 260141_at AT1G66350 RGL, RGL1, RGA-like 1 -0.231 0.004
56 254442_at AT4G21060 AtGALT2, GALT2, AGP galactosyltransferase 2 -0.229 -0.008
57 259207_at AT3G09050 unknown -0.226 -0.095
58 245990_at AT5G20640 unknown -0.226 0.031
59 265253_at AT2G02020 AtNPF8.4, AtPTR4, NPF8.4, NRT1/ PTR family 8.4, PTR4, peptide transporter 4 -0.221 0.017
60 252621_at AT3G45270 [hAT-like transposase family (hobo/Ac/Tam3), has a 5.7e-58 P-value blast match to GB:AAD24567 transposase Tag2 (hAT-element) (Arabidopsis thaliana)] -0.215 -0.019
61 259462_at AT1G18940 [Nodulin-like / Major Facilitator Superfamily protein] -0.213 -0.014
62 252199_at AT3G50270 [HXXXD-type acyl-transferase family protein] -0.210 0.019
63 251716_at AT3G55870 [ADC synthase superfamily protein] -0.207 -0.001
64 261841_at AT1G15920 [Polynucleotidyl transferase, ribonuclease H-like superfamily protein] -0.207 -0.006
65 257805_at AT3G18830 ATPLT5, POLYOL TRANSPORTER 5, ATPMT5, ARABIDOPSIS THALIANA POLYOL/MONOSACCHARIDE TRANSPORTER 5, PMT5, polyol/monosaccharide transporter 5 -0.206 -0.005
66 263970_at AT2G42850 CYP718, cytochrome P450, family 718 -0.204 0.041
67 251084_at AT5G01520 AIRP2, ABA Insensitive RING Protein 2, AtAIRP2 -0.200 -0.062
68 261085_at AT1G17480 IQD7, IQ-domain 7 -0.198 0.003
69 265433_at AT2G20950 [Arabidopsis phospholipase-like protein (PEARLI 4) family] -0.198 0.012
70 259540_at AT1G20640 NLP4, NIN-like protein 4 -0.197 -0.061
71 248055_at AT5G55830 LecRK-S.7, L-type lectin receptor kinase S.7 -0.194 -0.043
72 263232_at AT1G05700 [Leucine-rich repeat transmembrane protein kinase protein] -0.192 0.144
73 251820_at AT3G55040 GSTL2, glutathione transferase lambda 2 -0.192 0.027
74 252901_at AT4G39550 [Galactose oxidase/kelch repeat superfamily protein] -0.190 0.017
75 258470_at AT3G06035 [Glycoprotein membrane precursor GPI-anchored] -0.188 0.061
76 266068_at AT2G18640 GGPS4, geranylgeranyl pyrophosphate synthase 4 -0.186 0.001
77 263719_at AT2G13600 SLO2, SLOW GROWTH 2 -0.186 -0.004
78 251380_at AT3G60700 unknown -0.186 0.058
79 254974_at AT4G10490 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.184 -0.061
80 251805_at AT3G55530 AtSDIR1, SDIR1, SALT- AND DROUGHT-INDUCED RING FINGER1 -0.183 0.016
81 253500_at AT4G31920 ARR10, response regulator 10, RR10, response regulator 10 -0.177 -0.003
82 262780_at AT1G13090 CYP71B28, cytochrome P450, family 71, subfamily B, polypeptide 28 -0.176 0.009
83 247020_at AT5G67020 unknown -0.175 -0.029