4.0:Information of module
2hr transitory KNO3 PeR cell
In comparison with seed germinating in countinuous light 24h SL help
Scatter plot of seleted modules.
Trend of Up regulated genes including module
GOID Term Ontology p-value
GO:0032504 multicellular organism reproduction BP 6.385e-03
GO:0097164 ammonium ion metabolic process BP 1.220e-02
GO:0048609 multicellular organismal reproductive pr... BP 1.729e-02
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View Hierarchical networks of GOs (      )
Trend of Down regulated genes including module
GOID Term Ontology p-value
GO:0043207 response to external biotic stimulus BP 7.694e-04
GO:0051707 response to other organism BP 7.694e-04
GO:0009607 response to biotic stimulus BP 7.799e-04
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View Hierarchical networks of GOs (      )
List of genes in module
･･･up requlated genes  ･･･down regulated genes
probeID AGICode Annotation Log2 signal ratio
2hr transitory KNO3 PeR cell		 Log2 signal ratio
seed germinating in countinuous light 24h SL
1 247246_at AT5G64620 ATC/VIF2, CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 2, C/VIF2, cell wall / vacuolar inhibitor of fructosidase 2 0.324 0.013
2 249262_at AT5G41720 unknown 0.306 -0.780
3 261503_at AT1G71691 [GDSL-like Lipase/Acylhydrolase superfamily protein] 0.304 0.287
4 260642_at AT1G53260 [LOCATED IN: endomembrane system] 0.301 -0.541
5 262630_at AT1G06520 ATGPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1, sn-2-GPAT1, GLYCEROL-3-PHOSPHATE sn-2-ACYLTRANSFERASE 1 0.299 -0.921
6 247762_at AT5G59170 [Proline-rich extensin-like family protein] 0.287 0.236
7 251062_at AT5G01840 ATOFP1, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 1, OFP1, ovate family protein 1 0.285 -0.647
8 252833_at AT4G40090 AGP3, arabinogalactan protein 3 0.285 0.154
9 263486_at AT2G22200 [Integrase-type DNA-binding superfamily protein] 0.281 -0.744
10 247201_at AT5G65220 [Ribosomal L29 family protein ] 0.272 0.857
11 251785_at AT3G55130 ABCG19, ATP-binding cassette G19, ATWBC19, white-brown complex homolog 19, WBC19, white-brown complex homolog 19 0.270 -0.015
12 263907_at AT2G36270 ABI5, ABA INSENSITIVE 5, AtABI5, GIA1, GROWTH-INSENSITIVITY TO ABA 1 0.267 0.824
13 255577_at AT4G01410 [Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family] 0.264 -0.370
14 246792_at AT5G27290 unknown 0.264 -0.226
15 255826_at AT2G40490 HEME2 0.258 1.202
16 260402_at AT1G69820 GGT3, gamma-glutamyl transpeptidase 3, GGT4, gamma-glutamyl transpeptidase 4 0.255 -0.785
17 266764_at AT2G47050 [Plant invertase/pectin methylesterase inhibitor superfamily protein] 0.253 -0.560
18 244950_at ATMG00160 COX2, cytochrome oxidase 2 0.249 -0.031
19 254633_at AT4G18640 MRH1, morphogenesis of root hair 1 0.247 -0.011
20 253318_at AT4G33970 [Leucine-rich repeat (LRR) family protein] 0.247 -0.852
21 257869_at AT3G25160 [ER lumen protein retaining receptor family protein] 0.241 0.343
22 256063_at AT1G07130 ATSTN1, STN1 0.236 -0.448
23 253802_at AT4G28180 unknown 0.234 0.807
24 263984_at AT2G42670 unknown 0.232 -0.351
25 251701_at AT3G56650 PPD6, PsbP-domain protein 6 0.229 0.281
26 251280_at AT3G61810 [Glycosyl hydrolase family 17 protein] 0.227 -0.578
27 266347_at AT2G01440 [DEAD/DEAH box RNA helicase family protein ] 0.224 0.578
28 262309_at AT1G70820 [phosphoglucomutase, putative / glucose phosphomutase, putative] 0.223 0.037
29 256336_at AT1G72030 [Acyl-CoA N-acyltransferases (NAT) superfamily protein] 0.220 0.785
30 245073_at AT2G23210 [UDP-Glycosyltransferase superfamily protein] 0.219 0.194
31 264007_at AT2G21140 ATPRP2, proline-rich protein 2, PRP2, proline-rich protein 2 0.217 0.988
32 261798_at AT1G30460 ATCPSF30, ARABIDOPSIS THALIANA CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 30, CPSF30, cleavage and polyadenylation specificity factor 30 0.212 0.275
33 247807_at AT5G58360 ATOFP3, ARABIDOPSIS THALIANA OVATE FAMILY PROTEIN 3, OFP3, ovate family protein 3 0.210 -1.170
34 264659_at AT1G09930 ATOPT2, oligopeptide transporter 2, OPT2, oligopeptide transporter 2 0.209 -1.199
35 254644_at AT4G18510 CLE2, CLAVATA3/ESR-related 2 0.208 -0.074
36 264090_at AT1G79370 CYP79C1, cytochrome P450, family 79, subfamily C, polypeptide 1 0.207 -0.027
37 259827_at AT1G72270 unknown 0.207 -0.811
38 261184_at AT1G34545 [copia-like retrotransposon family, has a 3.0e-112 P-value blast match to GB:CAA72990 open reading frame 2 (Ty1_Copia-element) (Brassica oleracea)] 0.207 -1.442
39 252971_at AT4G38770 ATPRP4, ARABIDOPSIS THALIANA PROLINE-RICH PROTEIN 4, PRP4, proline-rich protein 4 0.206 1.196
40 267437_at AT2G19200 unknown 0.206 -0.277
41 248096_at AT5G55240 ATPXG2, ARABIDOPSIS THALIANA PEROXYGENASE 2 0.203 -0.470
42 257277_at AT3G14470 [NB-ARC domain-containing disease resistance protein] 0.192 0.513
43 255613_at AT4G01270 [RING/U-box superfamily protein] 0.192 0.506
44 252245_at AT3G49710 [Pentatricopeptide repeat (PPR) superfamily protein] 0.190 0.252
45 248275_at AT5G53520 ATOPT8, oligopeptide transporter 8, OPT8, oligopeptide transporter 8 0.190 -0.907
46 257881_at AT3G17180 scpl33, serine carboxypeptidase-like 33 0.189 -0.581
47 246937_at AT5G25370 PLDALPHA3, phospholipase D alpha 3 0.189 0.489
48 257589_at AT1G55050 unknown 0.188 -0.202
49 248621_at AT5G49350 [Glycine-rich protein family] 0.185 -0.198
50 257859_at AT3G12955 SAUR74, SMALL AUXIN UPREGULATED RNA 74 0.185 -0.827
51 248441_at AT5G51270 [U-box domain-containing protein kinase family protein] 0.182 -0.912
52 255329_at AT4G04370 [Tetratricopeptide repeat (TPR)-like superfamily protein] 0.182 -0.635
53 257255_at AT3G21960 [Receptor-like protein kinase-related family protein] 0.179 -0.257
54 254022_at AT4G25750 ABCG4, ATP-binding cassette G4 0.179 -1.168
55 250933_at AT5G03170 ATFLA11, ARABIDOPSIS FASCICLIN-LIKE ARABINOGALACTAN-PROTEIN 11, FLA11, FASCICLIN-like arabinogalactan-protein 11 0.177 -0.299
56 266376_at AT2G14620 XTH10, xyloglucan endotransglucosylase/hydrolase 10 0.177 0.014
57 259054_at AT3G03480 CHAT, acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase 0.177 -0.943
58 259073_at AT3G02290 [RING/U-box superfamily protein] 0.176 -0.234
59 267387_at AT2G44440 AtEML4, EML4, EMSY-like 4 0.176 0.013
60 260733_at AT1G17640 [RNA-binding (RRM/RBD/RNP motifs) family protein] 0.176 0.343
61 260306_at AT1G70540 EDA24, embryo sac development arrest 24 0.175 0.202
62 250940_at AT5G03310 SAUR44, SMALL AUXIN UPREGULATED RNA 44 0.174 0.477
63 266540_at AT2G35310 [Transcriptional factor B3 family protein] 0.174 -0.717
64 253865_at AT4G27470 ATRMA3, RMA3, RING membrane-anchor 3 0.173 0.158
65 250904_at AT5G03620 [Subtilisin-like serine endopeptidase family protein] 0.172 -1.142
66 250958_at AT5G03260 LAC11, laccase 11 0.171 -0.745
67 249364_at AT5G40590 [Cysteine/Histidine-rich C1 domain family protein] -0.383 -1.289
68 258017_at AT3G19370 unknown -0.362 -0.725
69 264767_at AT1G61380 SD1-29, S-domain-1 29 -0.346 0.787
70 258001_at AT3G28950 [AIG2-like (avirulence induced gene) family protein] -0.303 0.176
71 248560_at AT5G49970 pyridoxin (pyrodoxamine) 5'-phosphate oxidase -0.302 0.278
72 251022_at AT5G02150 Fes1C, Fes1C -0.300 0.416
73 261402_at AT1G79670 RFO1, RESISTANCE TO FUSARIUM OXYSPORUM 1, WAKL22 -0.290 -0.345
74 266743_at AT2G02990 ATRNS1, RIBONUCLEASE 1, RNS1, ribonuclease 1 -0.286 0.215
75 255028_at AT4G09890 unknown -0.285 -1.023
76 251940_at AT3G53450 LOG4, LONELY GUY 4 -0.279 -0.468
77 247891_at AT5G57960 [GTP-binding protein, HflX] -0.275 -0.084
78 254818_at AT4G12470 AZI1, azelaic acid induced 1 -0.259 -0.794
79 249724_at AT5G35450 [Disease resistance protein (CC-NBS-LRR class) family] -0.256 0.033
80 249403_at AT5G40270 [HD domain-containing metal-dependent phosphohydrolase family protein] -0.250 -0.371
81 260244_at AT1G74320 [Protein kinase superfamily protein] -0.248 0.146
82 244969_at ATCG00650 RPS18, ribosomal protein S18 -0.235 -0.222
83 248740_at AT5G48130 [Phototropic-responsive NPH3 family protein] -0.232 -0.498
84 252543_at AT3G45780 JK224, NPH1, NONPHOTOTROPIC HYPOCOTYL 1, PHOT1, phototropin 1, RPT1, ROOT PHOTOTROPISM 1 -0.231 0.093
85 257655_at AT3G13350 [HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain] -0.225 1.245
86 251197_at AT3G62960 [Thioredoxin superfamily protein] -0.216 -1.130
87 260386_at AT1G74010 [Calcium-dependent phosphotriesterase superfamily protein] -0.215 -0.391
88 251633_at AT3G57460 [catalytics] -0.213 -0.097
89 259110_at AT3G05570 unknown -0.212 0.230
90 247212_at AT5G65040 unknown -0.207 -0.782
91 248434_at AT5G51440 [HSP20-like chaperones superfamily protein] -0.203 0.513
92 261039_at AT1G17455 ELF4-L4, ELF4-like 4 -0.203 0.283
93 258138_at AT3G24495 ATMSH7, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MSH6-2, MUTS HOMOLOG 6-2, MSH7, MUTS homolog 7 -0.202 -0.100
94 254112_at AT4G24970 [Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein] -0.201 -0.921
95 247679_at AT5G59540 [2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein] -0.197 0.436
96 258321_at AT3G22840 ELIP, ELIP1, EARLY LIGHT-INDUCABLE PROTEIN -0.194 0.875
97 260974_at AT1G53440 [Leucine-rich repeat transmembrane protein kinase] -0.194 -0.538
98 251652_at AT3G57380 [Glycosyltransferase family 61 protein] -0.194 -0.122
99 247024_at AT5G66985 unknown -0.192 1.281
100 246536_at AT5G15920 EMB2782, EMBRYO DEFECTIVE 2782, SMC5, structural maintenance of chromosomes 5 -0.190 0.278
101 246782_at AT5G27320 ATGID1C, GID1C, GA INSENSITIVE DWARF1C -0.189 0.484
102 265088_at AT1G03750 CHR9, CHROMATIN REMODELING 9 -0.187 -0.907
103 256057_at AT1G07180 ATNDI1, ARABIDOPSIS THALIANA INTERNAL NON-PHOSPHORYLATING NAD ( P ) H DEHYDROGENASE, NDA1, alternative NAD(P)H dehydrogenase 1 -0.179 0.099
104 250346_at AT5G11950 LOG8, LONELY GUY 8 -0.175 0.810
105 254586_at AT4G19510 [Disease resistance protein (TIR-NBS-LRR class)] -0.174 0.357
106 267012_at AT2G39220 PLA IIB, PLP6, PATATIN-like protein 6 -0.174 -0.659
107 248102_at AT5G55140 [ribosomal protein L30 family protein] -0.173 0.129
108 259818_at AT1G49890 QWRF2, QWRF domain containing 2 -0.173 -0.485
109 253627_at AT4G30650 [Low temperature and salt responsive protein family] -0.172 0.150
110 266662_at AT2G25830 [YebC-related] -0.170 0.188
111 248553_at AT5G50170 [C2 calcium/lipid-binding and GRAM domain containing protein] -0.168 -0.483
112 255877_at AT2G40460 [Major facilitator superfamily protein] -0.168 -0.617
113 259637_at AT1G52260 ATPDI3, ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 3, ATPDIL1-5, PDI-like 1-5, PDI3, PROTEIN DISULFIDE ISOMERASE 3, PDIL1-5, PDI-like 1-5 -0.167 -0.933
114 260231_at AT1G74410 [RING/U-box superfamily protein] -0.162 0.269
115 260154_at AT1G52740 HTA9, histone H2A protein 9 -0.160 1.109
116 261803_at AT1G30500 NF-YA7, nuclear factor Y, subunit A7 -0.160 0.628
117 257734_at AT3G18370 ATSYTF, NTMC2T3, NTMC2TYPE3, SYTF -0.160 0.759
118 254760_at AT4G13200 unknown -0.158 0.645
119 247832_at AT5G58550 EOL2, ETO1-like 2 -0.158 -0.408
120 255077_at AT4G09150 [T-complex protein 11] -0.156 0.516
121 262196_at AT1G77870 MUB5, membrane-anchored ubiquitin-fold protein 5 precursor -0.156 -0.983
122 262668_at AT1G62830 ATLSD1, ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, ATSWP1, LDL1, LSD1-like 1, LSD1, LYSINE-SPECIFIC HISTONE DEMETHYLASE, SWP1 -0.156 0.115
123 257144_at AT3G27300 G6PD5, glucose-6-phosphate dehydrogenase 5 -0.156 0.764
124 250405_at AT5G10790 UBP22, ubiquitin-specific protease 22 -0.152 -0.236
125 266727_at AT2G03150 emb1579, embryo defective 1579 -0.150 0.060
126 263584_at AT2G17040 anac036, NAC domain containing protein 36, NAC036, NAC domain containing protein 36 -0.150 -0.992
127 251309_at AT3G61220 SDR1, short-chain dehydrogenase/reductase 1 -0.149 0.902
128 250159_at AT5G15200 [Ribosomal protein S4] -0.149 1.012
129 250861_at AT5G04740 ACR12, ACT domain repeats 12 -0.148 0.761
130 256321_at AT1G55020 ATLOX1, ARABIDOPSIS LIPOXYGENASE 1, LOX1, lipoxygenase 1 -0.146 0.287
131 254605_at AT4G18950 [Integrin-linked protein kinase family] -0.145 -0.546